data_2HKV # _entry.id 2HKV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HKV pdb_00002hkv 10.2210/pdb2hkv/pdb RCSB RCSB038462 ? ? WWPDB D_1000038462 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 361006 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HKV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of conserved hypothetical protein RBL00553 (ZP_00537729.1) from EXIGUOBACTERIUM SP. 255-15 at 1.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2HKV _cell.length_a 45.020 _cell.length_b 45.020 _cell.length_c 131.180 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HKV _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein' 17371.043 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TDWQQALDRHVGVGVRTTRDLIRLIQPEDWDKRPISGKRSVYEVAVHLAVLLEADLRIATGATADE(MSE)AQF YAVPVLPEQLVDRLDQSWQYYQDRL(MSE)ADFSTETTYWGVTDSTTGWLLEAAVHLYHHRSQLLDYLNLLGYDIKLDLF E ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTDWQQALDRHVGVGVRTTRDLIRLIQPEDWDKRPISGKRSVYEVAVHLAVLLEADLRIATGATADEMAQFYAVPVLPE QLVDRLDQSWQYYQDRLMADFSTETTYWGVTDSTTGWLLEAAVHLYHHRSQLLDYLNLLGYDIKLDLFE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 361006 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 ASP n 1 5 TRP n 1 6 GLN n 1 7 GLN n 1 8 ALA n 1 9 LEU n 1 10 ASP n 1 11 ARG n 1 12 HIS n 1 13 VAL n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 VAL n 1 18 ARG n 1 19 THR n 1 20 THR n 1 21 ARG n 1 22 ASP n 1 23 LEU n 1 24 ILE n 1 25 ARG n 1 26 LEU n 1 27 ILE n 1 28 GLN n 1 29 PRO n 1 30 GLU n 1 31 ASP n 1 32 TRP n 1 33 ASP n 1 34 LYS n 1 35 ARG n 1 36 PRO n 1 37 ILE n 1 38 SER n 1 39 GLY n 1 40 LYS n 1 41 ARG n 1 42 SER n 1 43 VAL n 1 44 TYR n 1 45 GLU n 1 46 VAL n 1 47 ALA n 1 48 VAL n 1 49 HIS n 1 50 LEU n 1 51 ALA n 1 52 VAL n 1 53 LEU n 1 54 LEU n 1 55 GLU n 1 56 ALA n 1 57 ASP n 1 58 LEU n 1 59 ARG n 1 60 ILE n 1 61 ALA n 1 62 THR n 1 63 GLY n 1 64 ALA n 1 65 THR n 1 66 ALA n 1 67 ASP n 1 68 GLU n 1 69 MSE n 1 70 ALA n 1 71 GLN n 1 72 PHE n 1 73 TYR n 1 74 ALA n 1 75 VAL n 1 76 PRO n 1 77 VAL n 1 78 LEU n 1 79 PRO n 1 80 GLU n 1 81 GLN n 1 82 LEU n 1 83 VAL n 1 84 ASP n 1 85 ARG n 1 86 LEU n 1 87 ASP n 1 88 GLN n 1 89 SER n 1 90 TRP n 1 91 GLN n 1 92 TYR n 1 93 TYR n 1 94 GLN n 1 95 ASP n 1 96 ARG n 1 97 LEU n 1 98 MSE n 1 99 ALA n 1 100 ASP n 1 101 PHE n 1 102 SER n 1 103 THR n 1 104 GLU n 1 105 THR n 1 106 THR n 1 107 TYR n 1 108 TRP n 1 109 GLY n 1 110 VAL n 1 111 THR n 1 112 ASP n 1 113 SER n 1 114 THR n 1 115 THR n 1 116 GLY n 1 117 TRP n 1 118 LEU n 1 119 LEU n 1 120 GLU n 1 121 ALA n 1 122 ALA n 1 123 VAL n 1 124 HIS n 1 125 LEU n 1 126 TYR n 1 127 HIS n 1 128 HIS n 1 129 ARG n 1 130 SER n 1 131 GLN n 1 132 LEU n 1 133 LEU n 1 134 ASP n 1 135 TYR n 1 136 LEU n 1 137 ASN n 1 138 LEU n 1 139 LEU n 1 140 GLY n 1 141 TYR n 1 142 ASP n 1 143 ILE n 1 144 LYS n 1 145 LEU n 1 146 ASP n 1 147 LEU n 1 148 PHE n 1 149 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Exiguobacterium _entity_src_gen.pdbx_gene_src_gene ZP_00537729.1 _entity_src_gen.gene_src_species 'Exiguobacterium sibiricum' _entity_src_gen.gene_src_strain 255-15 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Exiguobacterium sibiricum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262543 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q41IB9_9BACI _struct_ref.pdbx_db_accession Q41IB9 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HKV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q41IB9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HKV GLY A 1 ? UNP Q41IB9 ? ? 'expression tag' 0 1 1 2HKV MSE A 2 ? UNP Q41IB9 MET 1 'modified residue' 1 2 1 2HKV MSE A 69 ? UNP Q41IB9 MET 68 'modified residue' 68 3 1 2HKV MSE A 98 ? UNP Q41IB9 MET 97 'modified residue' 97 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HKV # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.description _exptl_crystal.density_meas _exptl_crystal.F_000 _exptl_crystal.preparation 1 42.07 2.21 ? ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION,SITTING DROP,NANODROP' ? 277 '20.0% PEG-3350, 0.2M MgSO4,, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' ? . 2 'VAPOR DIFFUSION,SITTING DROP,NANODROP' ? 293 '20.0% PEG-3350, 0.2M MgSO4,, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K' ? . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'MARMOSAIC 325 mm CCD' 'Flat collimating mirror, toroid focusing mirror' 2006-06-17 2 CCD 'MARMOSAIC 325 mm CCD' 'Flat collimating mirror, toroid focusing mirror' 2006-06-17 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double crystal monochromator' 'SINGLE WAVELENGTH' 1 x-ray 2 M 'Double crystal monochromator' MAD 2 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97925 1.0 2 0.92522 1.0 3 0.97934 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL9-2 'SSRL BEAMLINE BL9-2' 0.97925 ? SSRL 2 SYNCHROTRON BL9-2 'SSRL BEAMLINE BL9-2' '0.92522, 0.97934' ? SSRL # _reflns.entry_id 2HKV _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 25.094 _reflns.number_obs 17704 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_netI_over_sigmaI 9.580 _reflns.percent_possible_obs 99.8 _reflns.B_iso_Wilson_estimate 37.034 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 9.38 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.76 10939 ? ? 0.97 1.99 ? ? 7.01 ? 1533 99.8 1 1,2 1.76 1.83 11534 ? ? 0.732 2.8 ? ? ? ? 1600 92.50 2 1,2 1.83 1.91 11264 ? ? 0.571 3.4 ? ? ? ? 1565 93.50 3 1,2 1.91 2.02 13211 ? ? 0.375 5.2 ? ? ? ? 1849 97.00 4 1,2 2.02 2.14 11687 ? ? 0.262 7.0 ? ? ? ? 1643 98.60 5 1,2 2.14 2.31 18428 ? ? 0.226 10.1 ? ? ? ? 1781 99.40 6 1,2 2.31 2.54 21841 ? ? 0.187 12.9 ? ? ? ? 1748 99.80 7 1,2 2.54 2.90 21615 ? ? 0.152 14.6 ? ? ? ? 1752 99.90 8 1,2 2.90 25.1 22091 ? ? 0.115 17.0 ? ? ? ? 1825 100.00 9 1,2 # _refine.entry_id 2HKV _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 25.094 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.860 _refine.ls_number_reflns_obs 17699 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. THE ASSIGNMENT OF THE METAL AS PREDOMINATELY NICKEL IS BASED ON BOTH X-RAY FLUORECENCE METAL SCAN AND DIFFERENCE MAPS (ABOVE AND BELOW NICKEL AND ZINC EDGES). 5. THE ASSIGNMENT OF CHLORIDES ARE BASED ON DIFFERENCE DENSITY. 6. THE DISORDER ON TWO-FOLD BY RESIDUE 4 INDICATED THAT THE SPACE GROUP IS NOT STRICTLY P3221 BUT P32, REFINEMENT IN P3221 RESULTS ONLY ~1% INCREASE IN RFACTOR AND RFREE COMPARED TO P32, THUS THE SPACE GROUP WAS ASSIGNED AS HIGHER SYMMETRY P3221. 7. THE EXPERIMENTAL PHASES ARE FROM A DIFFERENT CRYSTAL, THEY ARE USED AS RESTRAINTS IN REFINEMENT. 8. DENSITY FOR RESIDUE 99 IS POOR. ; _refine.ls_R_factor_all 0.185 _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.227 _refine.ls_percent_reflns_R_free 7.700 _refine.ls_number_reflns_R_free 1361 _refine.B_iso_mean 33.948 _refine.aniso_B[1][1] -0.630 _refine.aniso_B[2][2] -0.630 _refine.aniso_B[3][3] 0.950 _refine.aniso_B[1][2] -0.320 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.pdbx_overall_ESU_R 0.107 _refine.pdbx_overall_ESU_R_Free 0.111 _refine.overall_SU_ML 0.106 _refine.overall_SU_B 6.318 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.18514 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1197 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1266 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 25.094 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1245 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 810 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1704 1.451 1.935 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1960 1.025 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 151 5.273 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 61 28.465 23.115 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 199 14.219 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 20.044 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 192 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1388 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 272 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 305 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 812 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 615 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 587 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 42 0.176 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 1 0.401 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.292 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 24 0.302 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 815 2.642 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 301 0.607 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1197 3.507 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 581 5.706 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 505 7.640 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.690 _refine_ls_shell.number_reflns_R_work 1168 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.R_factor_R_free 0.34 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 99 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1267 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HKV _struct.title 'CRYSTAL STRUCTURE OF A PUTATIVE MEMBER OF THE DINB FAMILY (EXIG_1237) FROM EXIGUOBACTERIUM SIBIRICUM 255-15 AT 1.70 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE MEMBER OF THE DINB FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, DNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.entry_id 2HKV # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? ILE A 27 ? THR A 2 ILE A 26 1 ? 25 HELX_P HELX_P2 2 GLN A 28 ? TRP A 32 ? GLN A 27 TRP A 31 5 ? 5 HELX_P HELX_P3 3 SER A 42 ? THR A 62 ? SER A 41 THR A 61 1 ? 21 HELX_P HELX_P4 4 THR A 65 ? ALA A 74 ? THR A 64 ALA A 73 1 ? 10 HELX_P HELX_P5 5 LEU A 78 ? GLU A 80 ? LEU A 77 GLU A 79 5 ? 3 HELX_P HELX_P6 6 GLN A 81 ? ALA A 99 ? GLN A 80 ALA A 98 1 ? 19 HELX_P HELX_P7 7 SER A 113 ? LEU A 139 ? SER A 112 LEU A 138 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale3 covale both ? A GLU 68 C ? ? ? 1_555 A MSE 69 N ? ? A GLU 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 69 C ? ? ? 1_555 A ALA 70 N ? ? A MSE 68 A ALA 69 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? A LEU 97 C ? ? ? 1_555 A MSE 98 N ? ? A LEU 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A MSE 98 C ? ? ? 1_555 A ALA 99 N ? ? A MSE 97 A ALA 98 1_555 ? ? ? ? ? ? ? 1.318 ? ? metalc1 metalc ? ? A HIS 49 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 48 A NI 149 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc2 metalc ? ? A HIS 124 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 123 A NI 149 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc3 metalc ? ? A HIS 128 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 127 A NI 149 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc4 metalc ? ? B NI . NI ? ? ? 1_555 E CL . CL ? ? A NI 149 A CL 152 1_555 ? ? ? ? ? ? ? 1.899 ? ? metalc5 metalc ? ? B NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 149 A HOH 153 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc6 metalc ? ? B NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 149 A HOH 155 1_555 ? ? ? ? ? ? ? 2.253 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 149 ? 6 'BINDING SITE FOR RESIDUE NI A 149' AC2 Software A CL 150 ? 2 'BINDING SITE FOR RESIDUE CL A 150' AC3 Software A CL 152 ? 6 'BINDING SITE FOR RESIDUE CL A 152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 49 ? HIS A 48 . ? 1_555 ? 2 AC1 6 HIS A 124 ? HIS A 123 . ? 1_555 ? 3 AC1 6 HIS A 128 ? HIS A 127 . ? 1_555 ? 4 AC1 6 CL E . ? CL A 152 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 153 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 155 . ? 1_555 ? 7 AC2 2 ARG A 41 ? ARG A 40 . ? 1_555 ? 8 AC2 2 GLN A 131 ? GLN A 130 . ? 1_555 ? 9 AC3 6 HIS A 124 ? HIS A 123 . ? 1_555 ? 10 AC3 6 HIS A 128 ? HIS A 127 . ? 1_555 ? 11 AC3 6 NI B . ? NI A 149 . ? 1_555 ? 12 AC3 6 HOH F . ? HOH A 153 . ? 1_555 ? 13 AC3 6 HOH F . ? HOH A 154 . ? 1_555 ? 14 AC3 6 HOH F . ? HOH A 155 . ? 1_555 ? # _atom_sites.entry_id 2HKV _atom_sites.fract_transf_matrix[1][1] 0.02221 _atom_sites.fract_transf_matrix[1][2] 0.01282 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02565 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00762 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NI O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 TRP 5 4 4 TRP TRP A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 GLN 7 6 6 GLN GLN A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 TRP 32 31 31 TRP TRP A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 HIS 49 48 48 HIS HIS A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 ASP 67 66 66 ASP ASP A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 MSE 69 68 68 MSE MSE A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 PRO 76 75 75 PRO PRO A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 GLN 88 87 87 GLN GLN A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 TRP 90 89 89 TRP TRP A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 GLN 94 93 93 GLN GLN A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 ARG 96 95 95 ARG ARG A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 MSE 98 97 97 MSE MSE A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 PHE 101 100 100 PHE PHE A . n A 1 102 SER 102 101 101 SER SER A . n A 1 103 THR 103 102 102 THR THR A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 THR 105 104 104 THR THR A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 TYR 107 106 106 TYR TYR A . n A 1 108 TRP 108 107 107 TRP TRP A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 THR 111 110 110 THR THR A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 TRP 117 116 116 TRP TRP A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 HIS 124 123 123 HIS HIS A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 TYR 126 125 125 TYR TYR A . n A 1 127 HIS 127 126 126 HIS HIS A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 ARG 129 128 128 ARG ARG A . n A 1 130 SER 130 129 129 SER SER A . n A 1 131 GLN 131 130 130 GLN GLN A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 ASP 134 133 133 ASP ASP A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 ASN 137 136 136 ASN ASN A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 TYR 141 140 140 TYR TYR A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 GLU 149 148 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 149 1 NI NI A . C 3 CL 1 150 2 CL CL A . D 3 CL 1 151 3 CL CL A . E 3 CL 1 152 4 CL CL A . F 4 HOH 1 153 5 HOH HOH A . F 4 HOH 2 154 6 HOH HOH A . F 4 HOH 3 155 7 HOH HOH A . F 4 HOH 4 156 8 HOH HOH A . F 4 HOH 5 157 9 HOH HOH A . F 4 HOH 6 158 10 HOH HOH A . F 4 HOH 7 159 11 HOH HOH A . F 4 HOH 8 160 12 HOH HOH A . F 4 HOH 9 161 13 HOH HOH A . F 4 HOH 10 162 14 HOH HOH A . F 4 HOH 11 163 15 HOH HOH A . F 4 HOH 12 164 16 HOH HOH A . F 4 HOH 13 165 17 HOH HOH A . F 4 HOH 14 166 18 HOH HOH A . F 4 HOH 15 167 19 HOH HOH A . F 4 HOH 16 168 20 HOH HOH A . F 4 HOH 17 169 21 HOH HOH A . F 4 HOH 18 170 22 HOH HOH A . F 4 HOH 19 171 23 HOH HOH A . F 4 HOH 20 172 24 HOH HOH A . F 4 HOH 21 173 25 HOH HOH A . F 4 HOH 22 174 26 HOH HOH A . F 4 HOH 23 175 27 HOH HOH A . F 4 HOH 24 176 28 HOH HOH A . F 4 HOH 25 177 29 HOH HOH A . F 4 HOH 26 178 30 HOH HOH A . F 4 HOH 27 179 31 HOH HOH A . F 4 HOH 28 180 32 HOH HOH A . F 4 HOH 29 181 33 HOH HOH A . F 4 HOH 30 182 34 HOH HOH A . F 4 HOH 31 183 35 HOH HOH A . F 4 HOH 32 184 36 HOH HOH A . F 4 HOH 33 185 37 HOH HOH A . F 4 HOH 34 186 38 HOH HOH A . F 4 HOH 35 187 39 HOH HOH A . F 4 HOH 36 188 40 HOH HOH A . F 4 HOH 37 189 41 HOH HOH A . F 4 HOH 38 190 42 HOH HOH A . F 4 HOH 39 191 43 HOH HOH A . F 4 HOH 40 192 44 HOH HOH A . F 4 HOH 41 193 45 HOH HOH A . F 4 HOH 42 194 46 HOH HOH A . F 4 HOH 43 195 47 HOH HOH A . F 4 HOH 44 196 48 HOH HOH A . F 4 HOH 45 197 49 HOH HOH A . F 4 HOH 46 198 50 HOH HOH A . F 4 HOH 47 199 51 HOH HOH A . F 4 HOH 48 200 52 HOH HOH A . F 4 HOH 49 201 53 HOH HOH A . F 4 HOH 50 202 54 HOH HOH A . F 4 HOH 51 203 55 HOH HOH A . F 4 HOH 52 204 56 HOH HOH A . F 4 HOH 53 205 57 HOH HOH A . F 4 HOH 54 206 58 HOH HOH A . F 4 HOH 55 207 59 HOH HOH A . F 4 HOH 56 208 60 HOH HOH A . F 4 HOH 57 209 61 HOH HOH A . F 4 HOH 58 210 62 HOH HOH A . F 4 HOH 59 211 63 HOH HOH A . F 4 HOH 60 212 64 HOH HOH A . F 4 HOH 61 213 65 HOH HOH A . F 4 HOH 62 214 66 HOH HOH A . F 4 HOH 63 215 67 HOH HOH A . F 4 HOH 64 216 68 HOH HOH A . F 4 HOH 65 217 69 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 69 A MSE 68 ? MET SELENOMETHIONINE 3 A MSE 98 A MSE 97 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3860 ? 1 MORE -100 ? 1 'SSA (A^2)' 13140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 NE2 ? A HIS 124 ? A HIS 123 ? 1_555 98.5 ? 2 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 88.2 ? 3 NE2 ? A HIS 124 ? A HIS 123 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 92.4 ? 4 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 CL ? E CL . ? A CL 152 ? 1_555 172.8 ? 5 NE2 ? A HIS 124 ? A HIS 123 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 CL ? E CL . ? A CL 152 ? 1_555 88.4 ? 6 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 CL ? E CL . ? A CL 152 ? 1_555 93.7 ? 7 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 153 ? 1_555 95.0 ? 8 NE2 ? A HIS 124 ? A HIS 123 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 153 ? 1_555 91.5 ? 9 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 153 ? 1_555 174.6 ? 10 CL ? E CL . ? A CL 152 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 153 ? 1_555 82.6 ? 11 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 155 ? 1_555 90.5 ? 12 NE2 ? A HIS 124 ? A HIS 123 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 155 ? 1_555 170.2 ? 13 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 155 ? 1_555 91.7 ? 14 CL ? E CL . ? A CL 152 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 155 ? 1_555 82.5 ? 15 O ? F HOH . ? A HOH 153 ? 1_555 NI ? B NI . ? A NI 149 ? 1_555 O ? F HOH . ? A HOH 155 ? 1_555 83.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2016-12-14 5 'Structure model' 1 4 2017-10-18 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' Other 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' database_2 3 6 'Structure model' pdbx_struct_conn_angle 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.value' 18 6 'Structure model' '_struct_conn.pdbx_dist_value' 19 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 6 'Structure model' '_struct_ref_seq_dif.details' 33 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 7.1350 _pdbx_refine_tls.origin_y -0.8810 _pdbx_refine_tls.origin_z -8.4390 _pdbx_refine_tls.T[1][1] -0.0121 _pdbx_refine_tls.T[2][2] -0.0130 _pdbx_refine_tls.T[3][3] -0.0639 _pdbx_refine_tls.T[1][2] -0.0881 _pdbx_refine_tls.T[1][3] -0.0672 _pdbx_refine_tls.T[2][3] -0.0843 _pdbx_refine_tls.L[1][1] 2.6534 _pdbx_refine_tls.L[2][2] 2.6711 _pdbx_refine_tls.L[3][3] 2.0371 _pdbx_refine_tls.L[1][2] -0.7319 _pdbx_refine_tls.L[1][3] 1.4145 _pdbx_refine_tls.L[2][3] -0.8647 _pdbx_refine_tls.S[1][1] 0.2271 _pdbx_refine_tls.S[2][2] -0.0447 _pdbx_refine_tls.S[3][3] -0.1824 _pdbx_refine_tls.S[1][2] 0.5931 _pdbx_refine_tls.S[1][3] -0.5004 _pdbx_refine_tls.S[2][3] 0.1120 _pdbx_refine_tls.S[2][1] -0.2802 _pdbx_refine_tls.S[3][1] -0.0122 _pdbx_refine_tls.S[3][2] 0.4846 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 148 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 147 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 84 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 84 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 84 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.16 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.14 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 99 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -59.64 _pdbx_validate_torsion.psi 103.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 27 ? OE1 ? A GLN 28 OE1 2 1 Y 1 A GLN 27 ? NE2 ? A GLN 28 NE2 3 1 Y 1 A ASP 99 ? OD1 ? A ASP 100 OD1 4 1 Y 1 A ASP 99 ? OD2 ? A ASP 100 OD2 5 1 Y 1 A SER 101 ? OG ? A SER 102 OG 6 1 Y 1 A GLU 103 ? CD ? A GLU 104 CD 7 1 Y 1 A GLU 103 ? OE1 ? A GLU 104 OE1 8 1 Y 1 A GLU 103 ? OE2 ? A GLU 104 OE2 9 1 Y 1 A LYS 143 ? CE ? A LYS 144 CE 10 1 Y 1 A LYS 143 ? NZ ? A LYS 144 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 148 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLU _pdbx_unobs_or_zero_occ_residues.label_seq_id 149 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'CHLORIDE ION' CL 4 water HOH #