data_2HL7 # _entry.id 2HL7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HL7 RCSB RCSB038474 WWPDB D_1000038474 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HL7 _pdbx_database_status.recvd_initial_deposition_date 2006-07-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Di Matteo, A.' 1 'Travaglini-Allocatelli, C.' 2 'Gianni, S.' 3 'Brunori, M.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A strategic protein in cytochrome c maturation: three-dimensional structure of CcmH and binding to apocytochrome c' J.Biol.Chem. 282 27012 27019 2007 JBCHA3 US 0021-9258 0071 ? 17623665 10.1074/jbc.M702702200 1 ;Characterization of the Escherichia coli CcmH protein reveals new insights into the redox pathway required for cytochrome c maturation ; Arch.Microbiol. 171 92 100 1999 ? GE 0302-8933 ? ? 9914305 10.1007/s002030050683 2 ;AtCCMH, an essential component of the c-type cytochrome maturation pathway in Arabidopsis mitochondria, interacts with apocytochrome c ; Proc.Natl.Acad.Sci.USA 102 16113 16118 2005 PNASA6 US 0027-8424 0040 ? 16236729 10.1073/pnas.0503473102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Di Matteo, A.' 1 primary 'Gianni, S.' 2 primary 'Schinina, M.E.' 3 primary 'Giorgi, A.' 4 primary 'Altieri, F.' 5 primary 'Calosci, N.' 6 primary 'Brunori, M.' 7 primary 'Travaglini-Allocatelli, C.' 8 1 'Fabianek, R.A.' 9 1 'Hofer, T.' 10 1 'Thony-Meyer, L.' 11 2 'Meyer, E.H.' 12 2 'Giege, P.' 13 2 'Gelhaye, E.' 14 2 'Rayapuram, N.' 15 2 'Ahuja, U.' 16 2 'Thony-Meyer, L.' 17 2 'Grienenberger, J.M.' 18 2 'Bonnard, G.' 19 # _cell.entry_id 2HL7 _cell.length_a 40.073 _cell.length_b 45.414 _cell.length_c 48.127 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HL7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytochrome C-type biogenesis protein CcmH' 9626.693 1 ? ? 'Periplasmic domain, residues 1-80' ? 2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ? 3 water nat water 18.015 70 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thiolo:disulfide interchange protein CCMH, CcmH: Thiol-oxidoreductase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMAIDTYEFASDAERERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVRYK PPVN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMAIDTYEFASDAERERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVRYK PPVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 ILE n 1 7 ASP n 1 8 THR n 1 9 TYR n 1 10 GLU n 1 11 PHE n 1 12 ALA n 1 13 SER n 1 14 ASP n 1 15 ALA n 1 16 GLU n 1 17 ARG n 1 18 GLU n 1 19 ARG n 1 20 PHE n 1 21 ARG n 1 22 ASN n 1 23 LEU n 1 24 THR n 1 25 GLN n 1 26 GLU n 1 27 LEU n 1 28 ARG n 1 29 CYS n 1 30 PRO n 1 31 LYS n 1 32 CYS n 1 33 GLN n 1 34 ASN n 1 35 GLN n 1 36 ASP n 1 37 ILE n 1 38 ALA n 1 39 ASP n 1 40 SER n 1 41 ASN n 1 42 ALA n 1 43 PRO n 1 44 ILE n 1 45 ALA n 1 46 ALA n 1 47 ASP n 1 48 LEU n 1 49 ARG n 1 50 LYS n 1 51 GLN n 1 52 ILE n 1 53 TYR n 1 54 GLY n 1 55 GLN n 1 56 LEU n 1 57 GLN n 1 58 GLN n 1 59 GLY n 1 60 LYS n 1 61 SER n 1 62 ASP n 1 63 GLY n 1 64 GLU n 1 65 ILE n 1 66 VAL n 1 67 ASP n 1 68 TYR n 1 69 MET n 1 70 VAL n 1 71 ALA n 1 72 ARG n 1 73 TYR n 1 74 GLY n 1 75 ASP n 1 76 PHE n 1 77 VAL n 1 78 ARG n 1 79 TYR n 1 80 LYS n 1 81 PRO n 1 82 PRO n 1 83 VAL n 1 84 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9I3N0_PSEAE _struct_ref.pdbx_db_accession Q9I3N0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AIDTYEFASDAERERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVRYKPPVN ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HL7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 84 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9I3N0 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 100 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 80 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HL7 GLY A 1 ? UNP Q9I3N0 ? ? 'EXPRESSION TAG' -4 1 1 2HL7 SER A 2 ? UNP Q9I3N0 ? ? 'EXPRESSION TAG' -3 2 1 2HL7 HIS A 3 ? UNP Q9I3N0 ? ? 'EXPRESSION TAG' -2 3 1 2HL7 MET A 4 ? UNP Q9I3N0 ? ? 'EXPRESSION TAG' -1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HL7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 2.27 45.90 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' 294 ? 8.5 '20% PEG 1000, 0.1M Tris-HCl , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K' . 2 'VAPOR DIFFUSION, HANGING DROP' 294 ? 8.0 '38% PEG 6000, 0.8M NaCl, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K' . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2005-02-15 ? 2 CCD 'MAR CCD 165 mm' 2005-07-15 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? MAD x-ray 2 1 M 'Khozu monochromator with a McLennon controller containing a LN2 cooled Si111 crystal' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97920 1.0 2 0.97940 1.0 3 0.97560 1.0 4 0.93100 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID29' ESRF ID29 ? '0.97920, 0.97940, 0.97560' 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? 0.93100 # _reflns.entry_id 2HL7 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 33 _reflns.number_all 10212 _reflns.number_obs 10212 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 2HL7 _refine.ls_number_reflns_obs 9417 _refine.ls_number_reflns_all 10116 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 97.82 _refine.ls_R_factor_obs 0.21065 _refine.ls_R_factor_all 0.21065 _refine.ls_R_factor_R_work 0.20941 _refine.ls_R_factor_R_free 0.23493 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 478 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 32.849 _refine.aniso_B[1][1] -0.16 _refine.aniso_B[2][2] -1.21 _refine.aniso_B[3][3] 1.37 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD, MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.090 _refine.overall_SU_B 3.757 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 653 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 743 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 684 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.358 1.972 ? 914 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.276 5.000 ? 81 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.002 24.474 ? 38 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.122 15.000 ? 113 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.972 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.100 0.200 ? 91 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 529 'X-RAY DIFFRACTION' ? r_nbd_refined 0.216 0.200 ? 343 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 460 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.209 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.247 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.104 0.200 ? 17 'X-RAY DIFFRACTION' ? r_mcbond_it 1.016 1.500 ? 419 'X-RAY DIFFRACTION' ? r_mcangle_it 1.621 2.000 ? 651 'X-RAY DIFFRACTION' ? r_scbond_it 2.311 3.000 ? 298 'X-RAY DIFFRACTION' ? r_scangle_it 3.354 4.500 ? 263 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 675 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 95.41 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HL7 _struct.title 'Crystal structure of the periplasmic domain of CcmH from Pseudomonas aeruginosa' _struct.pdbx_descriptor 'Cytochrome C-type biogenesis protein CcmH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HL7 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Three-helices bundle, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 4 ? TYR A 9 ? MET A -1 TYR A 5 5 ? 6 HELX_P HELX_P2 2 SER A 13 ? GLU A 26 ? SER A 9 GLU A 22 1 ? 14 HELX_P HELX_P3 3 ALA A 42 ? GLY A 59 ? ALA A 38 GLY A 55 1 ? 18 HELX_P HELX_P4 4 SER A 61 ? GLY A 74 ? SER A 57 GLY A 70 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 32 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 28 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.015 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 27 ? ARG A 28 ? LEU A 23 ARG A 24 A 2 ARG A 78 ? TYR A 79 ? ARG A 74 TYR A 75 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ARG _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 28 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 24 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 78 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 74 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE PG4 A 2000' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE PG4 A 3000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLY A 1 ? GLY A -4 . ? 3_555 ? 2 AC1 11 HIS A 3 ? HIS A -2 . ? 3_555 ? 3 AC1 11 SER A 2 ? SER A -3 . ? 3_555 ? 4 AC1 11 LEU A 23 ? LEU A 19 . ? 1_555 ? 5 AC1 11 GLU A 26 ? GLU A 22 . ? 1_555 ? 6 AC1 11 ASP A 47 ? ASP A 43 . ? 2_564 ? 7 AC1 11 ASP A 62 ? ASP A 58 . ? 1_555 ? 8 AC1 11 TYR A 73 ? TYR A 69 . ? 2_564 ? 9 AC1 11 HOH D . ? HOH A 3048 . ? 1_555 ? 10 AC1 11 HOH D . ? HOH A 3056 . ? 1_555 ? 11 AC1 11 HOH D . ? HOH A 3057 . ? 2_564 ? 12 AC2 11 ARG A 17 ? ARG A 13 . ? 3_555 ? 13 AC2 11 GLU A 18 ? GLU A 14 . ? 3_555 ? 14 AC2 11 ARG A 21 ? ARG A 17 . ? 3_555 ? 15 AC2 11 PRO A 43 ? PRO A 39 . ? 2_564 ? 16 AC2 11 LYS A 60 ? LYS A 56 . ? 1_555 ? 17 AC2 11 GLU A 64 ? GLU A 60 . ? 1_555 ? 18 AC2 11 HOH D . ? HOH A 3003 . ? 1_555 ? 19 AC2 11 HOH D . ? HOH A 3009 . ? 3_555 ? 20 AC2 11 HOH D . ? HOH A 3014 . ? 1_555 ? 21 AC2 11 HOH D . ? HOH A 3059 . ? 1_555 ? 22 AC2 11 HOH D . ? HOH A 3063 . ? 1_555 ? # _database_PDB_matrix.entry_id 2HL7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HL7 _atom_sites.fract_transf_matrix[1][1] 0.024954 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022020 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020778 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 -4 GLY GLY A . n A 1 2 SER 2 -3 -3 SER SER A . n A 1 3 HIS 3 -2 -2 HIS HIS A . n A 1 4 MET 4 -1 -1 MET MET A . n A 1 5 ALA 5 1 1 ALA ALA A . n A 1 6 ILE 6 2 2 ILE ILE A . n A 1 7 ASP 7 3 3 ASP ASP A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 TYR 9 5 5 TYR TYR A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 PHE 11 7 7 PHE PHE A . n A 1 12 ALA 12 8 8 ALA ALA A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 ASP 14 10 10 ASP ASP A . n A 1 15 ALA 15 11 11 ALA ALA A . n A 1 16 GLU 16 12 12 GLU GLU A . n A 1 17 ARG 17 13 13 ARG ARG A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 ARG 19 15 15 ARG ARG A . n A 1 20 PHE 20 16 16 PHE PHE A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 ASN 22 18 18 ASN ASN A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 THR 24 20 20 THR THR A . n A 1 25 GLN 25 21 21 GLN GLN A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 LEU 27 23 23 LEU LEU A . n A 1 28 ARG 28 24 24 ARG ARG A . n A 1 29 CYS 29 25 25 CYS CYS A . n A 1 30 PRO 30 26 26 PRO PRO A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 CYS 32 28 28 CYS CYS A . n A 1 33 GLN 33 29 29 GLN GLN A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 GLN 35 31 31 GLN GLN A . n A 1 36 ASP 36 32 32 ASP ASP A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 ASP 39 35 35 ASP ASP A . n A 1 40 SER 40 36 36 SER SER A . n A 1 41 ASN 41 37 37 ASN ASN A . n A 1 42 ALA 42 38 38 ALA ALA A . n A 1 43 PRO 43 39 39 PRO PRO A . n A 1 44 ILE 44 40 40 ILE ILE A . n A 1 45 ALA 45 41 41 ALA ALA A . n A 1 46 ALA 46 42 42 ALA ALA A . n A 1 47 ASP 47 43 43 ASP ASP A . n A 1 48 LEU 48 44 44 LEU LEU A . n A 1 49 ARG 49 45 45 ARG ARG A . n A 1 50 LYS 50 46 46 LYS LYS A . n A 1 51 GLN 51 47 47 GLN GLN A . n A 1 52 ILE 52 48 48 ILE ILE A . n A 1 53 TYR 53 49 49 TYR TYR A . n A 1 54 GLY 54 50 50 GLY GLY A . n A 1 55 GLN 55 51 51 GLN GLN A . n A 1 56 LEU 56 52 52 LEU LEU A . n A 1 57 GLN 57 53 53 GLN GLN A . n A 1 58 GLN 58 54 54 GLN GLN A . n A 1 59 GLY 59 55 55 GLY GLY A . n A 1 60 LYS 60 56 56 LYS LYS A . n A 1 61 SER 61 57 57 SER SER A . n A 1 62 ASP 62 58 58 ASP ASP A . n A 1 63 GLY 63 59 59 GLY GLY A . n A 1 64 GLU 64 60 60 GLU GLU A . n A 1 65 ILE 65 61 61 ILE ILE A . n A 1 66 VAL 66 62 62 VAL VAL A . n A 1 67 ASP 67 63 63 ASP ASP A . n A 1 68 TYR 68 64 64 TYR TYR A . n A 1 69 MET 69 65 65 MET MET A . n A 1 70 VAL 70 66 66 VAL VAL A . n A 1 71 ALA 71 67 67 ALA ALA A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 TYR 73 69 69 TYR TYR A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 ASP 75 71 71 ASP ASP A . n A 1 76 PHE 76 72 72 PHE PHE A . n A 1 77 VAL 77 73 73 VAL VAL A . n A 1 78 ARG 78 74 74 ARG ALA A . n A 1 79 TYR 79 75 75 TYR TYR A . n A 1 80 LYS 80 76 76 LYS LYS A . n A 1 81 PRO 81 77 77 PRO PRO A . n A 1 82 PRO 82 78 78 PRO PRO A . n A 1 83 VAL 83 79 ? ? ? A . n A 1 84 ASN 84 80 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 1 2000 2000 PG4 PG4 A . C 2 PG4 1 3000 3000 PG4 PG4 A . D 3 HOH 1 3001 1 HOH HOH A . D 3 HOH 2 3002 2 HOH HOH A . D 3 HOH 3 3003 3 HOH HOH A . D 3 HOH 4 3004 4 HOH HOH A . D 3 HOH 5 3005 5 HOH HOH A . D 3 HOH 6 3006 6 HOH HOH A . D 3 HOH 7 3007 7 HOH HOH A . D 3 HOH 8 3008 8 HOH HOH A . D 3 HOH 9 3009 9 HOH HOH A . D 3 HOH 10 3010 10 HOH HOH A . D 3 HOH 11 3011 11 HOH HOH A . D 3 HOH 12 3012 12 HOH HOH A . D 3 HOH 13 3013 13 HOH HOH A . D 3 HOH 14 3014 14 HOH HOH A . D 3 HOH 15 3015 15 HOH HOH A . D 3 HOH 16 3016 16 HOH HOH A . D 3 HOH 17 3017 17 HOH HOH A . D 3 HOH 18 3018 18 HOH HOH A . D 3 HOH 19 3019 19 HOH HOH A . D 3 HOH 20 3020 20 HOH HOH A . D 3 HOH 21 3021 21 HOH HOH A . D 3 HOH 22 3022 22 HOH HOH A . D 3 HOH 23 3023 23 HOH HOH A . D 3 HOH 24 3024 24 HOH HOH A . D 3 HOH 25 3025 25 HOH HOH A . D 3 HOH 26 3026 26 HOH HOH A . D 3 HOH 27 3027 27 HOH HOH A . D 3 HOH 28 3028 28 HOH HOH A . D 3 HOH 29 3029 29 HOH HOH A . D 3 HOH 30 3030 30 HOH HOH A . D 3 HOH 31 3031 31 HOH HOH A . D 3 HOH 32 3032 32 HOH HOH A . D 3 HOH 33 3033 33 HOH HOH A . D 3 HOH 34 3034 34 HOH HOH A . D 3 HOH 35 3035 35 HOH HOH A . D 3 HOH 36 3036 36 HOH HOH A . D 3 HOH 37 3037 37 HOH HOH A . D 3 HOH 38 3038 38 HOH HOH A . D 3 HOH 39 3039 39 HOH HOH A . D 3 HOH 40 3040 40 HOH HOH A . D 3 HOH 41 3041 41 HOH HOH A . D 3 HOH 42 3042 42 HOH HOH A . D 3 HOH 43 3043 43 HOH HOH A . D 3 HOH 44 3044 44 HOH HOH A . D 3 HOH 45 3045 45 HOH HOH A . D 3 HOH 46 3046 46 HOH HOH A . D 3 HOH 47 3047 47 HOH HOH A . D 3 HOH 48 3048 48 HOH HOH A . D 3 HOH 49 3049 49 HOH HOH A . D 3 HOH 50 3050 50 HOH HOH A . D 3 HOH 51 3051 51 HOH HOH A . D 3 HOH 52 3052 52 HOH HOH A . D 3 HOH 53 3053 53 HOH HOH A . D 3 HOH 54 3054 54 HOH HOH A . D 3 HOH 55 3055 55 HOH HOH A . D 3 HOH 56 3056 56 HOH HOH A . D 3 HOH 57 3057 57 HOH HOH A . D 3 HOH 58 3058 58 HOH HOH A . D 3 HOH 59 3059 59 HOH HOH A . D 3 HOH 60 3060 60 HOH HOH A . D 3 HOH 61 3061 61 HOH HOH A . D 3 HOH 62 3062 62 HOH HOH A . D 3 HOH 63 3063 63 HOH HOH A . D 3 HOH 64 3064 64 HOH HOH A . D 3 HOH 65 3065 65 HOH HOH A . D 3 HOH 66 3066 66 HOH HOH A . D 3 HOH 67 3067 67 HOH HOH A . D 3 HOH 68 3068 68 HOH HOH A . D 3 HOH 69 3069 69 HOH HOH A . D 3 HOH 70 3070 70 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-10 2 'Structure model' 1 1 2007-10-03 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.5340 16.1290 11.2710 0.0198 -0.0424 -0.0953 0.0021 0.0161 0.0099 5.8401 8.8753 3.9838 -1.7435 0.8202 -1.4676 -0.0081 0.2071 -0.0958 -0.5389 0.0113 0.0139 0.2476 -0.0993 -0.0032 'X-RAY DIFFRACTION' 2 ? refined 4.3080 20.1450 20.7150 0.0770 -0.0435 -0.0529 0.0062 -0.0779 -0.0434 5.8195 8.9002 6.0603 -5.0250 3.2005 -7.1923 -0.1506 -0.1930 0.2241 0.7800 0.0280 -0.4328 -0.6126 0.0039 0.1226 'X-RAY DIFFRACTION' 3 ? refined 10.9440 24.8250 14.8430 -0.1029 -0.0530 0.3978 -0.0245 -0.0405 -0.0543 5.8556 17.6465 9.0928 -5.8672 2.3114 -3.8814 -0.3787 -0.2609 0.6481 0.5057 0.2742 -2.5232 -0.7977 0.3098 0.1045 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 13 A 17 A 26 A 30 ? 'X-RAY DIFFRACTION' ? 2 2 A 42 A 46 A 59 A 63 ? 'X-RAY DIFFRACTION' ? 3 3 A 61 A 65 A 74 A 78 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE This coordinates is used non-sequential residue numbering. Number 0 was simply skipped in the numbering and have nothing to do with lack of electron density. ; # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 74 ? CG ? A ARG 78 CG 2 1 Y 1 A ARG 74 ? CD ? A ARG 78 CD 3 1 Y 1 A ARG 74 ? NE ? A ARG 78 NE 4 1 Y 1 A ARG 74 ? CZ ? A ARG 78 CZ 5 1 Y 1 A ARG 74 ? NH1 ? A ARG 78 NH1 6 1 Y 1 A ARG 74 ? NH2 ? A ARG 78 NH2 7 1 N 1 A PG4 2000 ? C7 ? B PG4 1 C7 8 1 N 1 A PG4 2000 ? C8 ? B PG4 1 C8 9 1 N 1 A PG4 2000 ? O5 ? B PG4 1 O5 10 1 N 1 A PG4 3000 ? C7 ? C PG4 1 C7 11 1 N 1 A PG4 3000 ? C8 ? C PG4 1 C8 12 1 N 1 A PG4 3000 ? O5 ? C PG4 1 O5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 79 ? A VAL 83 2 1 Y 1 A ASN 80 ? A ASN 84 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TETRAETHYLENE GLYCOL' PG4 3 water HOH #