HEADER SIGNALING PROTEIN 06-JUL-06 2HLB OBSLTE 08-FEB-12 2HLB TITLE RETRACTION: A STRUCTURAL BASIS FOR NUCLEOTIDE EXCHANGE ON G-ALPHA-I TITLE 2 SUBUNITS AND RECEPTOR COUPLING SPECIFICITY CAVEAT 2HLB CHIRALITY ERRORS AT MET B 10, ASP B 12, ARG C 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN, G-ALPHA-I; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: KB-752 PHAGE DISPLAY PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: D(2) DOPAMINE RECEPTOR; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: DOPAMINE D2 RECEPTOR, D2N RECEPTOR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNAI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPRO-EXHTB1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 13 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: PHAGE DISPLAY PEPTIDE SEQUENCE KEYWDS PROTEIN:PEPTIDE COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.JOHNSTON,D.P.SIDEROVSKI,V.J.WATTS REVDAT 7 09-MAY-12 2HLB 1 REVDAT 6 08-FEB-12 2HLB 1 OBSLTE REMARK VERSN REVDAT 5 24-FEB-09 2HLB 1 VERSN REVDAT 4 26-AUG-08 2HLB 1 DBREF REVDAT 3 19-AUG-08 2HLB 1 COMPND REVDAT 2 06-MAR-07 2HLB 1 JRNL REVDAT 1 23-JAN-07 2HLB 0 JRNL AUTH C.A.JOHNSTON,D.P.SIDEROVSKI JRNL TITL RETRACTION: STRUCTURAL BASIS FOR NUCLEOTIDE EXCHANGE ON JRNL TITL 2 G{ALPHA}I SUBUNITS AND RECEPTOR COUPLING SPECIFICITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 2012 JRNL REFN ESSN 1091-6490 JRNL DOI 10.1073/PNAS.1200173109 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.JOHNSTON,D.P.SIDEROVSKI REMARK 1 TITL STRUCTURAL BASIS FOR NUCLEOTIDE EXCHANGE ON G ALPHA I REMARK 1 TITL 2 SUBUNITS AND RECEPTOR COUPLING SPECIFICITY. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 104 2001 2007 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17264214 REMARK 1 DOI 10.1073/PNAS.0608599104 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 48 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTHORS REQUESTED TO OBSOLETE WITHOUT REMARK 3 SUPERSEDE. THE FOLLOWING STATEMENT WAS PUBLISHED IN THE THE REMARK 3 RETRACTION NOTICE: THE AUTHORS WISH TO NOTE THE FOLLOWING: IN OUR REMARK 3 PAPER, A COCRYSTAL STRUCTURE AT 2.2 ANGSTROM RESOLUTION WAS REMARK 3 DESCRIBED OF THE HETEROTRIMERIC G-PROTEIN ALPHA SUBUNIT GαI1 REMARK 3 BOUND TO TWO PEPTIDES: ONE FROM AN ARTIFICIAL SEQUENCE THAT REMARK 3 PROMOTES NUCLEOTIDE EXCHANGE (KB-752) AND A SECOND PEPTIDE (D2N) REMARK 3 FROM THE THIRD INTRACELLULAR LOOP OF THE D2 DOPAMINE RECEPTOR REMARK 3 (PDB ID CODE 2HLB). FURTHER EXAMINATION OF THE UNBIASED ELECTRON REMARK 3 DENSITY MAP HAS REVEALED THAT, WHILE ELECTRON DENSITY EXISTS FOR REMARK 3 THE KB-752 PEPTIDE, THERE IS A LACK OF CLEAR AND CONTINUOUS REMARK 3 ELECTRON DENSITY FOR THE D2N RECEPTOR PEPTIDE IN THE COMPLEX. REMARK 3 BECAUSE THE STRUCTURAL MODEL REPRESENTS A MAJOR CONCLUSION OF THE REMARK 3 PAPER BUT IS UNSUPPORTED BY THE EXPERIMENTAL ELECTRON DENSITY REMARK 3 MAP, WE WISH TO RETRACT THE PAPER. BOTH AUTHORS DEEPLY REGRET REMARK 3 THIS MISTAKE AND SINCERELY APOLOGIZE. REMARK 4 REMARK 4 2HLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THE ENTRY IS OBSOLETED DUE TO PAPER RETRACTION REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : CURVED GRAPHITE CRYSTAL REMARK 200 OPTICS : INVERTED PHI, TWO OXFORD REMARK 200 CRYOSTATS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.05M AMMONIUM SULFITE, 0.1M SODIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.90000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.90000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.20000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.90000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 60.20000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS 1 BIOLOGICAL UNIT CONSISTING REMARK 300 OF A G-PROTEIN ALPHA-I1 SUBUNIT, BOUND KB-752 PEPTIDE, BOUND D2N REMARK 300 PEPTIDE, AND BOUND MOLECULE OF GUANOSINE DIPHOSPHATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 VAL C 1 REMARK 465 TYR C 2 REMARK 465 ILE C 3 REMARK 465 LYS C 4 REMARK 465 ILE C 5 REMARK 465 TYR C 6 REMARK 465 ILE C 7 REMARK 465 VAL C 8 REMARK 465 LEU C 9 REMARK 465 ARG C 10 REMARK 465 ARG C 15 REMARK 465 VAL C 16 REMARK 465 ASN C 17 REMARK 465 THR C 18 REMARK 465 LYS C 19 REMARK 465 THR B 13 REMARK 465 LYS B 14 REMARK 465 SER B 15 REMARK 465 ARG B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 98 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 207 N SER B 1 1.76 REMARK 500 O HOH A 374 O HOH A 438 1.87 REMARK 500 OD2 ASP A 150 NZ LYS A 270 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 13 CB VAL A 13 CG1 -0.138 REMARK 500 VAL A 13 CB VAL A 13 CG2 -0.131 REMARK 500 GLU A 25 CD GLU A 25 OE1 -0.069 REMARK 500 GLU A 25 CD GLU A 25 OE2 -0.079 REMARK 500 ALA A 30 CA ALA A 30 CB -0.133 REMARK 500 GLU A 33 CD GLU A 33 OE2 -0.069 REMARK 500 GLU A 43 CD GLU A 43 OE1 -0.074 REMARK 500 VAL A 50 CB VAL A 50 CG1 -0.132 REMARK 500 TYR A 61 CE1 TYR A 61 CZ -0.085 REMARK 500 TYR A 69 CD1 TYR A 69 CE1 -0.109 REMARK 500 TYR A 69 CZ TYR A 69 CE2 -0.080 REMARK 500 TYR A 69 CE2 TYR A 69 CD2 -0.157 REMARK 500 ALA A 71 CA ALA A 71 CB -0.151 REMARK 500 VAL A 72 CB VAL A 72 CG1 -0.151 REMARK 500 VAL A 72 CB VAL A 72 CG2 -0.155 REMARK 500 TYR A 74 CE1 TYR A 74 CZ -0.083 REMARK 500 SER A 80 CB SER A 80 OG -0.081 REMARK 500 ALA A 83 CA ALA A 83 CB -0.138 REMARK 500 SER A 98 CA SER A 98 CB -0.103 REMARK 500 GLU A 122 CD GLU A 122 OE2 -0.086 REMARK 500 ALA A 124 CA ALA A 124 CB -0.145 REMARK 500 TRP A 131 CE3 TRP A 131 CZ3 -0.134 REMARK 500 GLU A 145 CD GLU A 145 OE2 -0.067 REMARK 500 TYR A 146 CE1 TYR A 146 CZ -0.094 REMARK 500 SER A 151 CB SER A 151 OG -0.079 REMARK 500 TYR A 154 CD1 TYR A 154 CE1 -0.103 REMARK 500 TYR A 154 CE1 TYR A 154 CZ -0.084 REMARK 500 TYR A 154 CE2 TYR A 154 CD2 -0.124 REMARK 500 TYR A 155 CD1 TYR A 155 CE1 -0.115 REMARK 500 TYR A 155 CE2 TYR A 155 CD2 -0.108 REMARK 500 VAL A 174 CB VAL A 174 CG1 -0.131 REMARK 500 VAL A 174 CB VAL A 174 CG2 -0.133 REMARK 500 PHE A 191 CZ PHE A 191 CE2 -0.116 REMARK 500 VAL A 201 CA VAL A 201 CB -0.168 REMARK 500 TRP A 211 CB TRP A 211 CG -0.112 REMARK 500 PHE A 215 CZ PHE A 215 CE2 -0.128 REMARK 500 VAL A 218 CB VAL A 218 CG1 -0.128 REMARK 500 PHE A 223 CE1 PHE A 223 CZ -0.119 REMARK 500 VAL A 225 CB VAL A 225 CG1 -0.155 REMARK 500 VAL A 225 CB VAL A 225 CG2 -0.140 REMARK 500 TYR A 230 CD1 TYR A 230 CE1 -0.127 REMARK 500 TYR A 230 CE2 TYR A 230 CD2 -0.116 REMARK 500 VAL A 233 CB VAL A 233 CG1 -0.135 REMARK 500 LYS A 280 N LYS A 280 CA 0.166 REMARK 500 TYR A 287 CD1 TYR A 287 CE1 -0.093 REMARK 500 TYR A 290 CZ TYR A 290 CE2 -0.087 REMARK 500 GLU A 298 CD GLU A 298 OE1 -0.085 REMARK 500 GLU A 298 CD GLU A 298 OE2 -0.087 REMARK 500 ALA A 299 CA ALA A 299 CB -0.133 REMARK 500 ALA A 300 CA ALA A 300 CB -0.145 REMARK 500 REMARK 500 THIS ENTRY HAS 61 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 36 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU A 38 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 SER A 206 N - CA - CB ANGL. DEV. = -17.1 DEGREES REMARK 500 CYS A 224 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU A 234 N - CA - CB ANGL. DEV. = -21.5 DEGREES REMARK 500 LEU A 234 N - CA - C ANGL. DEV. = 22.9 DEGREES REMARK 500 MET A 243 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 LYS A 280 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 LYS A 280 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 CYS A 325 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 328 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 337 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 58 -143.58 -105.60 REMARK 500 SER A 62 174.91 -59.93 REMARK 500 MET A 88 -39.59 -39.29 REMARK 500 LYS A 92 63.54 69.16 REMARK 500 ASN A 166 34.11 -97.81 REMARK 500 VAL A 201 -135.47 -84.72 REMARK 500 ARG A 205 111.68 47.81 REMARK 500 LYS A 209 -21.98 174.40 REMARK 500 PHE A 215 -23.85 81.99 REMARK 500 VAL A 233 111.35 47.27 REMARK 500 LYS A 279 -95.53 27.99 REMARK 500 ASP A 315 -54.00 -24.05 REMARK 500 THR A 316 -17.55 -152.91 REMARK 500 ARG C 12 147.48 142.19 REMARK 500 ARG C 13 163.91 -34.11 REMARK 500 ARG B 2 142.99 -26.07 REMARK 500 VAL B 3 165.09 176.77 REMARK 500 PHE B 8 -88.30 -17.23 REMARK 500 LEU B 9 -60.41 -25.39 REMARK 500 MET B 10 -122.39 49.97 REMARK 500 GLU B 11 -75.03 6.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 26 GLY A 27 -145.98 REMARK 500 THR A 181 THR A 182 129.96 REMARK 500 THR A 182 GLY A 183 123.74 REMARK 500 GLY A 203 GLN A 204 -107.33 REMARK 500 LEU A 232 VAL A 233 129.06 REMARK 500 LEU A 234 ALA A 235 -108.41 REMARK 500 ALA A 235 GLU A 236 139.48 REMARK 500 MET A 240 ASN A 241 148.17 REMARK 500 ILE A 278 LYS A 279 108.05 REMARK 500 ASP A 315 THR A 316 -130.02 REMARK 500 THR A 324 CYS A 325 147.43 REMARK 500 ARG C 12 ARG C 13 -66.95 REMARK 500 ARG C 13 LYS C 14 45.98 REMARK 500 ARG B 2 VAL B 3 -142.38 REMARK 500 LEU B 9 MET B 10 102.47 REMARK 500 GLU B 11 ASP B 12 -144.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 20 21.9 L L OUTSIDE RANGE REMARK 500 ARG A 21 24.1 L L OUTSIDE RANGE REMARK 500 ASP A 26 23.2 L L OUTSIDE RANGE REMARK 500 GLN A 52 24.4 L L OUTSIDE RANGE REMARK 500 ALA A 59 24.9 L L OUTSIDE RANGE REMARK 500 GLN A 68 24.6 L L OUTSIDE RANGE REMARK 500 ARG A 105 24.8 L L OUTSIDE RANGE REMARK 500 PHE A 108 24.5 L L OUTSIDE RANGE REMARK 500 LEU A 130 24.8 L L OUTSIDE RANGE REMARK 500 GLN A 137 24.9 L L OUTSIDE RANGE REMARK 500 ALA A 138 23.2 L L OUTSIDE RANGE REMARK 500 SER A 143 22.0 L L OUTSIDE RANGE REMARK 500 ASN A 157 18.6 L L OUTSIDE RANGE REMARK 500 ASN A 166 24.0 L L OUTSIDE RANGE REMARK 500 THR A 177 16.6 L L OUTSIDE RANGE REMARK 500 ILE A 184 12.6 L L OUTSIDE RANGE REMARK 500 SER A 206 52.0 L L OUTSIDE RANGE REMARK 500 ARG A 208 18.3 L L OUTSIDE RANGE REMARK 500 VAL A 233 12.0 L L OUTSIDE RANGE REMARK 500 GLU A 245 22.3 L L OUTSIDE RANGE REMARK 500 LEU A 273 24.2 L L OUTSIDE RANGE REMARK 500 ILE A 278 22.1 L L OUTSIDE RANGE REMARK 500 THR A 284 23.2 L L OUTSIDE RANGE REMARK 500 GLU A 289 21.4 L L OUTSIDE RANGE REMARK 500 THR A 327 23.2 L L OUTSIDE RANGE REMARK 500 VAL A 332 21.8 L L OUTSIDE RANGE REMARK 500 ARG C 13 -27.9 L D WRONG HAND REMARK 500 THR B 4 22.1 L L OUTSIDE RANGE REMARK 500 TRP B 5 23.0 L L OUTSIDE RANGE REMARK 500 MET B 10 -29.5 L D WRONG HAND REMARK 500 ASP B 12 -29.8 L D WRONG HAND REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 355 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y3A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G-ALPHA-I1 BOUND TO A PHAGE PEPTIDE GEF REMARK 900 RELATED ID: 1AS3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G-ALPHA-I1 BOUND TO GDP DBREF 2HLB A 1 354 UNP P63096 GNAI1_HUMAN 1 354 DBREF 2HLB C 1 19 UNP P14416 DRD2_HUMAN 208 226 DBREF 2HLB B 1 16 PDB 2HLB 2HLB 1 16 SEQADV 2HLB VAL A 42 UNP P63096 GLY 41 CONFLICT SEQRES 1 A 354 MET GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL SEQRES 2 A 354 GLU ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP SEQRES 3 A 354 GLY GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU SEQRES 4 A 354 GLY ALA VAL GLU SER GLY LYS SER THR ILE VAL LYS GLN SEQRES 5 A 354 MET LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU SEQRES 6 A 354 CYS LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE SEQRES 7 A 354 GLN SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU SEQRES 8 A 354 LYS ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA SEQRES 9 A 354 ARG GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY SEQRES 10 A 354 PHE MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU SEQRES 11 A 354 TRP LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER SEQRES 12 A 354 ARG GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU SEQRES 13 A 354 ASN ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO SEQRES 14 A 354 THR GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR SEQRES 15 A 354 GLY ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS SEQRES 16 A 354 PHE LYS MET PHE ASP VAL GLY GLY GLN ARG SER GLU ARG SEQRES 17 A 354 LYS LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE SEQRES 18 A 354 ILE PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU SEQRES 19 A 354 ALA GLU ASP GLU GLU MET ASN ARG MET HIS GLU SER MET SEQRES 20 A 354 LYS LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR SEQRES 21 A 354 ASP THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU SEQRES 22 A 354 PHE GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS SEQRES 23 A 354 TYR PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA SEQRES 24 A 354 ALA ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS SEQRES 25 A 354 ARG LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS SEQRES 26 A 354 ALA THR ASP THR LYS ASN VAL GLN PHE VAL PHE ASP ALA SEQRES 27 A 354 VAL THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS SEQRES 28 A 354 GLY LEU PHE SEQRES 1 B 16 SER ARG VAL THR TRP TYR ASP PHE LEU MET GLU ASP THR SEQRES 2 B 16 LYS SER ARG SEQRES 1 C 19 VAL TYR ILE LYS ILE TYR ILE VAL LEU ARG ARG ARG ARG SEQRES 2 C 19 LYS ARG VAL ASN THR LYS HET SO4 A 356 5 HET GDP A 355 28 HETNAM SO4 SULFATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 4 SO4 O4 S 2- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *117(H2 O) HELIX 1 1 ASP A 9 LYS A 17 1 9 HELIX 2 2 MET A 18 ARG A 24 5 7 HELIX 3 3 ASP A 26 ALA A 30 5 5 HELIX 4 4 GLY A 45 GLU A 58 1 14 HELIX 5 5 SER A 62 TYR A 69 1 8 HELIX 6 6 TYR A 69 LYS A 92 1 24 HELIX 7 7 ALA A 99 ALA A 113 1 15 HELIX 8 8 THR A 120 ASP A 133 1 14 HELIX 9 9 ASP A 133 ARG A 142 1 10 HELIX 10 10 SER A 143 TYR A 146 5 4 HELIX 11 11 SER A 151 ASP A 158 1 8 HELIX 12 12 ASP A 158 GLN A 164 1 7 HELIX 13 13 THR A 170 ARG A 176 1 7 HELIX 14 14 SER A 228 LEU A 232 5 5 HELIX 15 15 ASN A 241 ASN A 255 1 15 HELIX 16 16 ASN A 256 THR A 260 5 5 HELIX 17 17 LYS A 270 LYS A 279 1 10 HELIX 18 18 PRO A 282 CYS A 286 5 5 HELIX 19 19 THR A 295 ASP A 309 1 15 HELIX 20 20 ASP A 328 LEU A 348 1 21 HELIX 21 21 LYS A 349 CYS A 351 5 3 HELIX 22 22 THR B 4 GLU B 11 1 8 SHEET 1 A 6 VAL A 185 PHE A 191 0 SHEET 2 A 6 LEU A 194 ASP A 200 -1 O PHE A 196 N PHE A 189 SHEET 3 A 6 ALA A 31 GLY A 40 1 N VAL A 34 O LYS A 197 SHEET 4 A 6 ALA A 220 ALA A 226 1 O CYS A 224 N LEU A 39 SHEET 5 A 6 SER A 263 ASN A 269 1 O ILE A 265 N PHE A 223 SHEET 6 A 6 TYR A 320 THR A 324 1 O HIS A 322 N LEU A 268 SHEET 1 B 4 VAL A 185 PHE A 191 0 SHEET 2 B 4 LEU A 194 ASP A 200 -1 O PHE A 196 N PHE A 189 SHEET 3 B 4 ALA A 31 GLY A 40 1 N VAL A 34 O LYS A 197 SHEET 4 B 4 LEU A 353 PHE A 354 -1 O PHE A 354 N ALA A 31 SITE 1 AC1 6 ARG A 15 ARG A 21 ARG A 32 LYS A 180 SITE 2 AC1 6 LEU A 348 HOH A 453 SITE 1 AC2 22 GLU A 43 SER A 44 GLY A 45 LYS A 46 SITE 2 AC2 22 SER A 47 THR A 48 SER A 151 LEU A 175 SITE 3 AC2 22 ARG A 176 THR A 177 ARG A 178 ASN A 269 SITE 4 AC2 22 LYS A 270 ASP A 272 LEU A 273 CYS A 325 SITE 5 AC2 22 ALA A 326 THR A 327 HOH A 358 HOH A 370 SITE 6 AC2 22 HOH A 384 HOH A 460 CRYST1 120.400 120.400 69.800 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014327 0.00000