HEADER HYDROLASE 10-JUL-06 2HLT TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS ACYLPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ACYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYLPHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.6.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS ALPHA/BETA SANDWICH, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.XIA,J.C.HU REVDAT 3 09-MAR-22 2HLT 1 REMARK REVDAT 2 24-FEB-09 2HLT 1 VERSN REVDAT 1 31-JUL-07 2HLT 0 JRNL AUTH B.XIA,J.C.HU JRNL TITL SOLUTION STRUCTURE OF BACILLUS SUBTILIS ACYLPHOSPHATASE IN JRNL TITL 2 FREE AND BOUND STATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.03, AMBER 7.0 REMARK 3 AUTHORS : GUNTERT, P. (DYANA), PEARLMAN, D.A. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HLT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038493. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5MM BSACP, U-15N,13C; 50MM PBS REMARK 210 BUFFER; 0.03% (W/V) NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 11 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 13 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 17 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 20 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLU A 81 -5.13 -148.80 REMARK 500 3 HIS A 84 -49.10 -150.93 REMARK 500 6 LYS A 29 40.07 38.72 REMARK 500 6 TYR A 90 46.29 -84.46 REMARK 500 10 TYR A 90 10.11 -151.55 REMARK 500 12 LYS A 29 42.75 39.88 REMARK 500 13 TYR A 90 19.37 -142.41 REMARK 500 14 GLU A 81 -10.79 -152.21 REMARK 500 14 HIS A 84 -49.22 -146.63 REMARK 500 17 LYS A 29 41.72 39.07 REMARK 500 19 LYS A 29 54.36 28.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 36 ARG A 37 4 -144.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 28 0.10 SIDE CHAIN REMARK 500 10 ARG A 28 0.10 SIDE CHAIN REMARK 500 11 ARG A 28 0.10 SIDE CHAIN REMARK 500 15 ARG A 41 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 92 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FHM RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN FREE FORM REMARK 900 RELATED ID: 2HLU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN FREE FORM DBREF 2HLT A 1 91 UNP O35031 ACYP_BACSU 1 91 SEQRES 1 A 91 MET LEU GLN TYR ARG ILE ILE VAL ASP GLY ARG VAL GLN SEQRES 2 A 91 GLY VAL GLY PHE ARG TYR PHE VAL GLN MET GLU ALA ASP SEQRES 3 A 91 LYS ARG LYS LEU ALA GLY TRP VAL LYS ASN ARG ASP ASP SEQRES 4 A 91 GLY ARG VAL GLU ILE LEU ALA GLU GLY PRO GLU ASN ALA SEQRES 5 A 91 LEU GLN SER PHE VAL GLU ALA VAL LYS ASN GLY SER PRO SEQRES 6 A 91 PHE SER LYS VAL THR ASP ILE SER VAL THR GLU SER ARG SEQRES 7 A 91 SER LEU GLU GLY HIS HIS ARG PHE SER ILE VAL TYR SER HET PO4 A 92 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- HELIX 1 1 GLY A 16 LYS A 27 1 12 HELIX 2 2 PRO A 49 GLY A 63 1 15 SHEET 1 A 5 LYS A 68 SER A 77 0 SHEET 2 A 5 LEU A 2 ARG A 11 -1 N ASP A 9 O THR A 70 SHEET 3 A 5 VAL A 42 GLY A 48 -1 O ALA A 46 N TYR A 4 SHEET 4 A 5 ALA A 31 ASN A 36 -1 N LYS A 35 O GLU A 43 SHEET 5 A 5 PHE A 86 ILE A 88 1 O SER A 87 N VAL A 34 SITE 1 AC1 7 GLN A 13 GLY A 14 VAL A 15 GLY A 16 SITE 2 AC1 7 PHE A 17 ARG A 18 ASN A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1