HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-JUL-06 2HMC TITLE THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE DAPA FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_L_411P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: DAPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA BARREL (TIM BARREL), STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2HMC 1 VERSN REVDAT 2 24-FEB-09 2HMC 1 VERSN REVDAT 1 05-SEP-06 2HMC 0 JRNL AUTH Y.KIM,R.ZHANG,X.XU,H.ZHENG,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE DAPA JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED 2006 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 25301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -2.50000 REMARK 3 B12 (A**2) : 0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2577 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3506 ; 1.415 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 5.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.235 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;14.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1982 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1416 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1811 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1674 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2630 ; 1.252 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 2.305 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 876 ; 3.549 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0667 34.1192 12.2766 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0682 REMARK 3 T33: -0.0491 T12: 0.0216 REMARK 3 T13: 0.0175 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.3981 L22: 0.4883 REMARK 3 L33: 0.7184 L12: 0.0661 REMARK 3 L13: -0.0036 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0332 S13: -0.0977 REMARK 3 S21: -0.1077 S22: -0.0088 S23: -0.0189 REMARK 3 S31: 0.2223 S32: 0.0162 S33: 0.0384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LITHIUM CITRATE, 20% PEG3350, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.45700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.45700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMER THE ASYMMETRIC UNIT CONTAINS A MONOMER AND THE REMARK 300 OTHERS ARE GENERATED BY -X+Y, Y,-Z+1/2 Y,1-X+Y,Z+1/2 1-X+Y,1-X,Z - REMARK 300 X,1-X+Y,-Z 1+Y,1+X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.55100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -50.55100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 50.55100 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.45700 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.45700 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -50.55100 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.45700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 874 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 LEU A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 VAL A 315 REMARK 465 GLN A 316 REMARK 465 THR A 317 REMARK 465 CYS A 318 REMARK 465 LYS A 319 REMARK 465 ALA A 320 REMARK 465 ALA A 321 REMARK 465 GLY A 322 REMARK 465 SER A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 549 O HOH A 895 1.97 REMARK 500 NH1 ARG A 30 O HOH A 871 2.06 REMARK 500 O ASP A 184 O HOH A 881 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 -27.32 81.26 REMARK 500 LEU A 216 60.96 -118.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 585 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 610 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 650 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH A 842 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 849 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 869 O REMARK 620 2 THR A 180 O 107.0 REMARK 620 3 ARG A 182 O 78.3 109.5 REMARK 620 4 ASP A 184 OD1 98.3 153.7 82.3 REMARK 620 5 HOH A 536 O 166.1 84.7 91.0 71.3 REMARK 620 6 VAL A 186 O 85.3 81.3 162.3 93.9 104.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 603 O REMARK 620 2 HOH A 873 O 126.9 REMARK 620 3 HOH A 568 O 125.1 106.5 REMARK 620 4 PRO A 105 O 103.7 76.7 99.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6154 RELATED DB: TARGETDB DBREF 2HMC A 1 321 UNP Q8U6Y1 Q8U6Y1_AGRT5 1 321 SEQADV 2HMC MSE A -20 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A -19 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -18 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -17 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -16 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -15 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -14 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -13 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -12 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -11 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -10 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -9 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A -8 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC ARG A -7 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLU A -6 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC ASN A -5 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC LEU A -4 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC TYR A -3 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC PHE A -2 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLN A -1 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A 0 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC MSE A 1 UNP Q8U6Y1 MET 1 MODIFIED RESIDUE SEQADV 2HMC MSE A 14 UNP Q8U6Y1 MET 14 MODIFIED RESIDUE SEQADV 2HMC MSE A 40 UNP Q8U6Y1 MET 40 MODIFIED RESIDUE SEQADV 2HMC MSE A 49 UNP Q8U6Y1 MET 49 MODIFIED RESIDUE SEQADV 2HMC MSE A 61 UNP Q8U6Y1 MET 61 MODIFIED RESIDUE SEQADV 2HMC MSE A 102 UNP Q8U6Y1 MET 102 MODIFIED RESIDUE SEQADV 2HMC MSE A 172 UNP Q8U6Y1 MET 172 MODIFIED RESIDUE SEQADV 2HMC MSE A 189 UNP Q8U6Y1 MET 189 MODIFIED RESIDUE SEQADV 2HMC MSE A 267 UNP Q8U6Y1 MET 267 MODIFIED RESIDUE SEQADV 2HMC MSE A 268 UNP Q8U6Y1 MET 268 MODIFIED RESIDUE SEQADV 2HMC GLY A 322 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A 323 UNP Q8U6Y1 CLONING ARTIFACT SEQRES 1 A 344 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 344 ARG GLU ASN LEU TYR PHE GLN GLY MSE THR ALA SER ILE SEQRES 3 A 344 PHE SER GLY VAL ILE PRO ALA LEU MSE THR PRO CYS ARG SEQRES 4 A 344 GLN ASP ARG THR PRO ASP PHE ASP ALA LEU VAL ARG LYS SEQRES 5 A 344 GLY LYS GLU LEU ILE ALA ASP GLY MSE SER ALA VAL VAL SEQRES 6 A 344 TYR CYS GLY SER MSE GLY ASP TRP PRO LEU LEU THR ASP SEQRES 7 A 344 GLU GLN ARG MSE GLU GLY VAL GLU ARG LEU VAL LYS ALA SEQRES 8 A 344 GLY ILE PRO VAL ILE VAL GLY THR GLY ALA VAL ASN THR SEQRES 9 A 344 ALA SER ALA VAL ALA HIS ALA VAL HIS ALA GLN LYS VAL SEQRES 10 A 344 GLY ALA LYS GLY LEU MSE VAL ILE PRO ARG VAL LEU SER SEQRES 11 A 344 ARG GLY SER VAL ILE ALA ALA GLN LYS ALA HIS PHE LYS SEQRES 12 A 344 ALA ILE LEU SER ALA ALA PRO GLU ILE PRO ALA VAL ILE SEQRES 13 A 344 TYR ASN SER PRO TYR TYR GLY PHE ALA THR ARG ALA ASP SEQRES 14 A 344 LEU PHE PHE ALA LEU ARG ALA GLU HIS LYS ASN LEU VAL SEQRES 15 A 344 GLY PHE LYS GLU PHE GLY GLY PRO ALA ASP MSE ARG TYR SEQRES 16 A 344 ALA ALA GLU ASN ILE THR SER ARG ASP ASP GLU VAL THR SEQRES 17 A 344 LEU MSE ILE GLY VAL ASP THR ALA VAL VAL HIS GLY PHE SEQRES 18 A 344 VAL ASN CYS GLY ALA THR GLY ALA ILE THR GLY ILE GLY SEQRES 19 A 344 ASN VAL LEU PRO LYS GLU VAL ILE HIS LEU CYS LYS LEU SEQRES 20 A 344 SER GLN ALA ALA ALA LYS GLY ASP ALA ASP ALA ARG ALA SEQRES 21 A 344 ARG ALA LEU GLU LEU GLU GLN ALA LEU ALA VAL LEU SER SEQRES 22 A 344 SER PHE ASP GLU GLY PRO ASP LEU VAL LEU TYR PHE LYS SEQRES 23 A 344 TYR MSE MSE VAL LEU LYS GLY ASP LYS GLU TYR THR LEU SEQRES 24 A 344 HIS PHE ASN GLU THR ASP ALA LEU THR ASP SER GLN ARG SEQRES 25 A 344 GLY TYR VAL GLU ALA GLN PHE LYS LEU PHE ASN SER TRP SEQRES 26 A 344 TYR ALA ASP TRP SER LYS LEU PRO GLY ALA VAL GLN THR SEQRES 27 A 344 CYS LYS ALA ALA GLY SER MODRES 2HMC MSE A 1 MET SELENOMETHIONINE MODRES 2HMC MSE A 14 MET SELENOMETHIONINE MODRES 2HMC MSE A 40 MET SELENOMETHIONINE MODRES 2HMC MSE A 49 MET SELENOMETHIONINE MODRES 2HMC MSE A 61 MET SELENOMETHIONINE MODRES 2HMC MSE A 102 MET SELENOMETHIONINE MODRES 2HMC MSE A 172 MET SELENOMETHIONINE MODRES 2HMC MSE A 189 MET SELENOMETHIONINE MODRES 2HMC MSE A 267 MET SELENOMETHIONINE MODRES 2HMC MSE A 268 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 40 8 HET MSE A 49 8 HET MSE A 61 8 HET MSE A 102 8 HET MSE A 172 16 HET MSE A 189 16 HET MSE A 267 8 HET MSE A 268 8 HET MG A 501 1 HET MG A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *409(H2 O) HELIX 1 1 ASP A 24 ASP A 38 1 15 HELIX 2 2 GLY A 47 LEU A 55 5 9 HELIX 3 3 THR A 56 ALA A 70 1 15 HELIX 4 4 ASN A 82 GLY A 97 1 16 HELIX 5 5 VAL A 113 ALA A 128 1 16 HELIX 6 6 SER A 138 GLY A 142 5 5 HELIX 7 7 ARG A 146 HIS A 157 1 12 HELIX 8 8 GLY A 168 ILE A 179 1 12 HELIX 9 9 VAL A 192 THR A 194 5 3 HELIX 10 10 ALA A 195 CYS A 203 1 9 HELIX 11 11 GLY A 211 VAL A 215 5 5 HELIX 12 12 LEU A 216 ALA A 231 1 16 HELIX 13 13 ASP A 234 LEU A 248 1 15 HELIX 14 14 LEU A 248 PHE A 254 1 7 HELIX 15 15 ASP A 255 GLY A 257 5 3 HELIX 16 16 ASP A 259 LYS A 271 1 13 HELIX 17 17 ASP A 273 THR A 277 5 5 HELIX 18 18 THR A 287 LYS A 310 1 24 SHEET 1 A 8 GLY A 8 PRO A 11 0 SHEET 2 A 8 GLY A 207 THR A 210 1 O ALA A 208 N ILE A 10 SHEET 3 A 8 THR A 187 ILE A 190 1 N ILE A 190 O ILE A 209 SHEET 4 A 8 LEU A 160 GLU A 165 1 N PHE A 163 O MSE A 189 SHEET 5 A 8 ALA A 133 ASN A 137 1 N ILE A 135 O LYS A 164 SHEET 6 A 8 GLY A 100 VAL A 103 1 N VAL A 103 O VAL A 134 SHEET 7 A 8 VAL A 74 GLY A 77 1 N VAL A 76 O MSE A 102 SHEET 8 A 8 VAL A 43 TYR A 45 1 N VAL A 43 O ILE A 75 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C LEU A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N THR A 15 1555 1555 1.33 LINK C GLY A 39 N MSE A 40 1555 1555 1.34 LINK C MSE A 40 N SER A 41 1555 1555 1.33 LINK C ASER A 48 N MSE A 49 1555 1555 1.33 LINK C BSER A 48 N MSE A 49 1555 1555 1.34 LINK C MSE A 49 N GLY A 50 1555 1555 1.33 LINK C ARG A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N GLU A 62 1555 1555 1.34 LINK C LEU A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N VAL A 103 1555 1555 1.33 LINK C ASP A 171 N BMSE A 172 1555 1555 1.33 LINK C ASP A 171 N AMSE A 172 1555 1555 1.34 LINK C BMSE A 172 N BARG A 173 1555 1555 1.33 LINK C AMSE A 172 N AARG A 173 1555 1555 1.33 LINK C LEU A 188 N BMSE A 189 1555 1555 1.34 LINK C LEU A 188 N AMSE A 189 1555 1555 1.34 LINK C BMSE A 189 N ILE A 190 1555 1555 1.34 LINK C AMSE A 189 N ILE A 190 1555 1555 1.34 LINK C TYR A 266 N MSE A 267 1555 1555 1.34 LINK C MSE A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N VAL A 269 1555 1555 1.34 LINK MG MG A 501 O HOH A 869 1555 1555 2.25 LINK MG MG A 501 O THR A 180 1555 1555 2.44 LINK MG MG A 501 O ARG A 182 1555 1555 2.59 LINK MG MG A 501 OD1 ASP A 184 1555 1555 2.38 LINK MG MG A 501 O HOH A 536 1555 1555 2.52 LINK MG MG A 501 O VAL A 186 1555 1555 2.52 LINK MG MG A 502 O HOH A 603 1555 1555 2.15 LINK MG MG A 502 O HOH A 873 1555 1555 2.11 LINK MG MG A 502 O HOH A 568 1555 1555 3.05 LINK MG MG A 502 O PRO A 105 1555 1555 2.78 CISPEP 1 TYR A 45 CYS A 46 0 -4.08 SITE 1 AC1 6 THR A 180 ARG A 182 ASP A 184 VAL A 186 SITE 2 AC1 6 HOH A 536 HOH A 869 SITE 1 AC2 7 ALA A 80 ILE A 104 PRO A 105 HIS A 120 SITE 2 AC2 7 HOH A 568 HOH A 603 HOH A 873 CRYST1 101.102 101.102 120.914 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009891 0.005711 0.000000 0.00000 SCALE2 0.000000 0.011421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008270 0.00000