HEADER SERINE PROTEASE 23-AUG-94 2HNT TITLE CRYSTALLOGRAPHIC STRUCTURE OF HUMAN GAMMA-THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-THROMBIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GAMMA-THROMBIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GAMMA-THROMBIN; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: GAMMA-THROMBIN; COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS SERINE PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY REVDAT 3 24-FEB-09 2HNT 1 VERSN REVDAT 2 01-APR-03 2HNT 1 JRNL REVDAT 1 30-NOV-94 2HNT 0 JRNL AUTH T.J.RYDEL,M.YIN,K.P.PADMANABHAN,D.T.BLANKENSHIP, JRNL AUTH 2 A.D.CARDIN,P.E.CORREA,J.W.FENTON 2ND.,A.TULINSKY JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF HUMAN GAMMA-THROMBIN. JRNL REF J.BIOL.CHEM. V. 269 22000 1994 JRNL REFN ISSN 0021-9258 JRNL PMID 8071320 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES REMARK 1 TITL 2 OF ALPHA-THROMBIN REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; NULL REMARK 3 ANGLE DISTANCE (A) : 3.100 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HNT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.22500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THIS FORM OF THROMBIN IS CLEAVED IN SEVERAL PLACES AS A REMARK 400 RESULT OF AUTOLYSIS AND IS IDENTIFIED AS GAMMA THROMBIN. REMARK 400 CHAIN IDENTIFIER *L* IS USED FOR RESIDUES 1H - 15; REMARK 400 CHAIN IDENTIFIER *C* IS USED FOR RESIDUES 16 - 75; REMARK 400 CHAIN IDENTIFIER *D* IS USED FOR RESIDUES 76 - 77A; REMARK 400 CHAIN IDENTIFIER *E* IS USED FOR RESIDUES 78 - 149E; REMARK 400 CHAIN IDENTIFIER *F* IS USED FOR RESIDUES 150 - 247. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 1H REMARK 465 PHE L 1G REMARK 465 GLY L 1F REMARK 465 SER L 1E REMARK 465 GLY L 1D REMARK 465 GLU L 1C REMARK 465 GLY L 14M REMARK 465 ARG L 14N REMARK 465 ARG C 73 REMARK 465 THR C 74 REMARK 465 ARG C 75 REMARK 465 ASN E 78 REMARK 465 ILE E 79 REMARK 465 ASN E 143 REMARK 465 LEU E 144 REMARK 465 LYS E 145 REMARK 465 GLU E 146 REMARK 465 THR E 147 REMARK 465 TRP E 148 REMARK 465 THR E 149 REMARK 465 ALA E 150 REMARK 465 ASN E 151 REMARK 465 VAL E 152 REMARK 465 GLY E 153 REMARK 465 LYS E 154 REMARK 465 GLY F 150 REMARK 465 GLN F 151 REMARK 465 PHE F 245 REMARK 465 GLY F 246 REMARK 465 GLU F 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP F 178 NH1 ARG F 233 1.96 REMARK 500 NH1 ARG C 50 O LYS E 109 2.05 REMARK 500 N VAL E 138 O VAL F 158 2.06 REMARK 500 ND1 HIS E 119 O HOH E 396 2.08 REMARK 500 OE2 GLU L 8 NZ LYS F 202 2.08 REMARK 500 O SER F 203 O ASN F 204B 2.09 REMARK 500 OG SER C 72 O SER F 153 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1A CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG L 4 CB - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 THR L 14B N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 GLU L 14C CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG L 14D N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP L 14L CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP C 21 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C 35 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ALA C 44 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 VAL C 52 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS C 58 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 LEU C 60 N - CA - CB ANGL. DEV. = -13.0 DEGREES REMARK 500 LYS C 60F CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU C 65 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 ARG C 67 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU E 86 CG - CD - OE1 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG E 97 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP E 125 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP E 125 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 LEU E 130 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR E 134 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR E 134 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG E 137 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG E 137 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 CYS F 168 CA - CB - SG ANGL. DEV. = 12.0 DEGREES REMARK 500 CYS F 182 CA - CB - SG ANGL. DEV. = 15.7 DEGREES REMARK 500 ALA F 183 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG F 187 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP F 194 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG F 206 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR F 208 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR F 208 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLN F 209 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 TYR F 228 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG F 233 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -71.71 -146.34 REMARK 500 LYS L 10 30.45 -89.53 REMARK 500 SER L 11 72.05 30.20 REMARK 500 LYS L 14A -9.19 -56.14 REMARK 500 ALA C 22 -173.78 -67.17 REMARK 500 SER C 36A 42.08 178.21 REMARK 500 PRO C 37 -171.95 -67.29 REMARK 500 GLU C 39 112.68 -161.85 REMARK 500 ALA C 44 -174.99 179.70 REMARK 500 ASP C 60E 85.82 67.85 REMARK 500 LYS C 60F 97.97 -162.92 REMARK 500 GLU E 97A -69.35 -94.51 REMARK 500 ASN E 98 54.51 -150.92 REMARK 500 LEU E 99 44.57 36.57 REMARK 500 HIS E 119 130.25 -177.18 REMARK 500 PRO E 120 174.42 -52.87 REMARK 500 LEU E 130 82.06 -62.50 REMARK 500 SER F 153 -25.50 -144.95 REMARK 500 ARG F 165 -74.11 -38.17 REMARK 500 GLU F 186B -0.18 -46.11 REMARK 500 ASP F 189 -177.61 -176.47 REMARK 500 PHE F 204A -71.42 -57.92 REMARK 500 VAL F 213 101.09 -57.42 REMARK 500 GLU F 217 72.09 -172.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR F 225 0.07 SIDE_CHAIN REMARK 500 PHE F 232 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU C 41 13.78 REMARK 500 VAL C 52 12.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 351 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH E 353 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH C 397 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH C 449 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH C 467 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH E 395 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH C 482 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH F 417 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH E 427 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH F 421 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH C 522 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH E 501 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH C 555 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH F 442 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH C 557 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH E 524 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH F 465 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH F 472 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH E 554 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH F 473 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH F 489 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH F 528 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH F 544 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH F 562 DISTANCE = 11.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 2HNT L 1H 14N UNP P00734 THRB_HUMAN 328 363 DBREF 2HNT C 16 75 UNP P00734 THRB_HUMAN 364 433 DBREF 2HNT E 78 154 UNP P00734 THRB_HUMAN 437 517 DBREF 2HNT F 150 247 UNP P00734 THRB_HUMAN 518 622 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 C 70 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 C 70 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 C 70 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 C 70 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 C 70 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 C 70 HIS SER ARG THR ARG SEQRES 1 E 81 ASN ILE GLU LYS ILE SER MET LEU GLU LYS ILE TYR ILE SEQRES 2 E 81 HIS PRO ARG TYR ASN TRP ARG GLU ASN LEU ASP ARG ASP SEQRES 3 E 81 ILE ALA LEU MET LYS LEU LYS LYS PRO VAL ALA PHE SER SEQRES 4 E 81 ASP TYR ILE HIS PRO VAL CYS LEU PRO ASP ARG GLU THR SEQRES 5 E 81 ALA ALA SER LEU LEU GLN ALA GLY TYR LYS GLY ARG VAL SEQRES 6 E 81 THR GLY TRP GLY ASN LEU LYS GLU THR TRP THR ALA ASN SEQRES 7 E 81 VAL GLY LYS SEQRES 1 F 105 GLY GLN PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE SEQRES 2 F 105 VAL GLU ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG SEQRES 3 F 105 ILE THR ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP SEQRES 4 F 105 GLU GLY LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY SEQRES 5 F 105 GLY PRO PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP SEQRES 6 F 105 TYR GLN MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP SEQRES 7 F 105 ARG ASP GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG SEQRES 8 F 105 LEU LYS LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY SEQRES 9 F 105 GLU FORMUL 5 HOH *186(H2 O) HELIX 1 H1 ALA C 56 LEU C 59 1 4 HELIX 2 H2 ARG E 126 SER E 129B 1 6 HELIX 3 H3 ARG F 165 SER F 171 1 7 HELIX 4 H4 VAL F 231 GLN F 244 1 14 SHEET 1 B1 6 PRO C 28 SER C 36A 0 SHEET 2 B1 6 PRO C 37 ASP C 49 -1 SHEET 3 B1 6 ARG C 50 THR C 54 -1 SHEET 4 B1 6 LEU E 99 LYS E 109 -1 SHEET 5 B1 6 LYS E 81 ASN E 95 -1 SHEET 6 B1 6 VAL C 66 ILE C 68 -1 SHEET 1 B2 7 GLY E 133 TRP E 141 0 SHEET 2 B2 7 LEU F 155 ILE F 162 -1 SHEET 3 B2 7 ASN F 179 GLY F 184 -1 SHEET 4 B2 7 GLY F 226 HIS F 230 -1 SHEET 5 B2 7 ARG F 206 VAL F 213 -1 SHEET 6 B2 7 GLY F 196 SER F 203 -1 SHEET 7 B2 7 GLY E 133 TRP E 141 -1 SSBOND 1 CYS L 1 CYS E 122 1555 1555 2.04 SSBOND 2 CYS C 42 CYS C 58 1555 1555 2.01 SSBOND 3 CYS F 168 CYS F 182 1555 1555 2.08 SSBOND 4 CYS F 191 CYS F 220 1555 1555 2.05 CISPEP 1 SER C 36A PRO C 37 0 -1.81 SITE 1 CAT 3 HIS C 57 ASP E 102 SER F 195 CRYST1 126.450 48.230 52.430 90.00 96.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007908 0.000000 0.000859 0.00000 SCALE2 0.000000 0.020734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019185 0.00000