HEADER RECOMBINATION/DNA 14-JUL-06 2HOF TITLE CRYSTAL STRUCTURE OF THE PRE-CLEAVAGE SYNAPTIC COMPLEX IN THE CRE-LOXP TITLE 2 SITE-SPECIFIC RECOMBINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOXP DNA; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LOXP DNA; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RECOMBINASE CRE; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 7 ORGANISM_TAXID: 10678; SOURCE 8 GENE: CRE; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CRE-LOXP PRECLEAVAGE SYNAPSE, RECOMBINATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,G.D.VAN DUYNE REVDAT 6 30-AUG-23 2HOF 1 REMARK REVDAT 5 20-OCT-21 2HOF 1 SEQADV REVDAT 4 18-OCT-17 2HOF 1 REMARK REVDAT 3 24-FEB-09 2HOF 1 VERSN REVDAT 2 30-OCT-07 2HOF 1 JRNL REVDAT 1 26-JUN-07 2HOF 0 JRNL AUTH K.GHOSH,F.GUO,G.D.VAN DUYNE JRNL TITL SYNAPSIS OF LOXP SITES BY CRE RECOMBINASE. JRNL REF J.BIOL.CHEM. V. 282 24004 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17573343 JRNL DOI 10.1074/JBC.M703283200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4963 REMARK 3 NUCLEIC ACID ATOMS : 1394 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.968 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6607 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9206 ; 1.452 ; 2.221 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 6.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;32.272 ;22.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 910 ;18.219 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;16.001 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4510 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2893 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4352 ; 0.293 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 511 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3192 ; 0.605 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4953 ; 1.028 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4275 ; 1.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4253 ; 2.413 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM ACETATE, CALCIUM CHLORIDE, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.37400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.37400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.81250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.81250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.37400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.81250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.06500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.37400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.81250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.06500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.13000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 178.74800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT C 1 REMARK 465 DT D 1 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 HIS A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 VAL A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 GLY A 198 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 ALA A 201 REMARK 465 THR A 202 REMARK 465 LEU A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 THR A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 VAL A 209 REMARK 465 GLU A 210 REMARK 465 GLY A 342 REMARK 465 ASP A 343 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 HIS B 8 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 LEU B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 VAL B 16 REMARK 465 ASP B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 LEU B 328 REMARK 465 ASP B 329 REMARK 465 SER B 330 REMARK 465 GLU B 331 REMARK 465 THR B 332 REMARK 465 GLY B 333 REMARK 465 GLY B 342 REMARK 465 ASP B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 9 N1 DC D 9 C2 -0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 2 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 DA C 4 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 DA C 4 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 6 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DC C 6 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 7 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT C 8 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DC C 9 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DG C 10 OP1 - P - OP2 ANGL. DEV. = -9.0 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 12 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT C 13 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 DT C 13 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT C 13 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DA C 14 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DG C 15 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 DC C 16 OP1 - P - OP2 ANGL. DEV. = -10.1 DEGREES REMARK 500 DC C 16 N1 - C1' - C2' ANGL. DEV. = 9.8 DEGREES REMARK 500 DA C 17 OP1 - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 DA C 17 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 18 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA C 19 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DC C 20 OP1 - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 DA C 21 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DA C 21 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA C 21 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DT C 22 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT C 22 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT C 23 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DT C 23 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DT C 23 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA C 24 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DT C 25 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DA C 26 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES REMARK 500 DC C 27 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DC C 27 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG C 28 OP1 - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 DA C 29 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DA C 29 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 29 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA C 30 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DA C 30 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC C 31 OP1 - P - OP2 ANGL. DEV. = -9.0 DEGREES REMARK 500 DC C 31 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 33 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 DA C 34 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 113 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 42.11 -101.84 REMARK 500 GLN A 35 7.85 -66.92 REMARK 500 PRO A 65 98.48 17.39 REMARK 500 GLU A 138 -165.30 -111.61 REMARK 500 SER A 186 -138.79 -118.29 REMARK 500 THR A 188 -157.21 -117.27 REMARK 500 ASP A 277 155.51 -46.50 REMARK 500 SER A 279 108.36 57.89 REMARK 500 ASP B 33 48.07 -105.37 REMARK 500 ASN B 60 70.24 45.91 REMARK 500 PRO B 65 108.16 8.99 REMARK 500 SER B 186 -164.98 -126.32 REMARK 500 ASP B 233 116.32 -165.27 REMARK 500 ALA B 249 78.77 -119.12 REMARK 500 ASP B 277 -171.66 -52.92 REMARK 500 TYR B 283 33.95 74.26 REMARK 500 ILE B 325 78.89 -108.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 64 PRO A 65 -112.63 REMARK 500 PHE B 64 PRO B 65 -117.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CRX RELATED DB: PDB REMARK 900 RELATED ID: 4CRX RELATED DB: PDB REMARK 900 RELATED ID: 3CRX RELATED DB: PDB REMARK 900 RELATED ID: 2HOI RELATED DB: PDB DBREF 2HOF A 1 343 UNP P06956 RECR_BPP1 1 343 DBREF 2HOF B 1 343 UNP P06956 RECR_BPP1 1 343 DBREF 2HOF C 1 35 PDB 2HOF 2HOF 1 35 DBREF 2HOF D 1 35 PDB 2HOF 2HOF 1 35 SEQADV 2HOF ALA A 201 UNP P06956 LYS 201 ENGINEERED MUTATION SEQADV 2HOF ALA B 201 UNP P06956 LYS 201 ENGINEERED MUTATION SEQRES 1 C 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 35 DA DG DC DA DT DA DC DA DT DT DA DT DA SEQRES 3 C 35 DC DG DA DA DC DT DT DA DT SEQRES 1 D 35 DT DA DT DA DA DG DT DT DC DG DT DA DT SEQRES 2 D 35 DA DA DT DG DT DA DT DG DC DT DA DT DA SEQRES 3 D 35 DC DG DA DA DG DT DT DA DT SEQRES 1 A 343 MET SER ASN LEU LEU THR VAL HIS GLN ASN LEU PRO ALA SEQRES 2 A 343 LEU PRO VAL ASP ALA THR SER ASP GLU VAL ARG LYS ASN SEQRES 3 A 343 LEU MET ASP MET PHE ARG ASP ARG GLN ALA PHE SER GLU SEQRES 4 A 343 HIS THR TRP LYS MET LEU LEU SER VAL CYS ARG SER TRP SEQRES 5 A 343 ALA ALA TRP CYS LYS LEU ASN ASN ARG LYS TRP PHE PRO SEQRES 6 A 343 ALA GLU PRO GLU ASP VAL ARG ASP TYR LEU LEU TYR LEU SEQRES 7 A 343 GLN ALA ARG GLY LEU ALA VAL LYS THR ILE GLN GLN HIS SEQRES 8 A 343 LEU GLY GLN LEU ASN MET LEU HIS ARG ARG SER GLY LEU SEQRES 9 A 343 PRO ARG PRO SER ASP SER ASN ALA VAL SER LEU VAL MET SEQRES 10 A 343 ARG ARG ILE ARG LYS GLU ASN VAL ASP ALA GLY GLU ARG SEQRES 11 A 343 ALA LYS GLN ALA LEU ALA PHE GLU ARG THR ASP PHE ASP SEQRES 12 A 343 GLN VAL ARG SER LEU MET GLU ASN SER ASP ARG CYS GLN SEQRES 13 A 343 ASP ILE ARG ASN LEU ALA PHE LEU GLY ILE ALA TYR ASN SEQRES 14 A 343 THR LEU LEU ARG ILE ALA GLU ILE ALA ARG ILE ARG VAL SEQRES 15 A 343 LYS ASP ILE SER ARG THR ASP GLY GLY ARG MET LEU ILE SEQRES 16 A 343 HIS ILE GLY ARG THR ALA THR LEU VAL SER THR ALA GLY SEQRES 17 A 343 VAL GLU LYS ALA LEU SER LEU GLY VAL THR LYS LEU VAL SEQRES 18 A 343 GLU ARG TRP ILE SER VAL SER GLY VAL ALA ASP ASP PRO SEQRES 19 A 343 ASN ASN TYR LEU PHE CYS ARG VAL ARG LYS ASN GLY VAL SEQRES 20 A 343 ALA ALA PRO SER ALA THR SER GLN LEU SER THR ARG ALA SEQRES 21 A 343 LEU GLU GLY ILE PHE GLU ALA THR HIS ARG LEU ILE TYR SEQRES 22 A 343 GLY ALA LYS ASP ASP SER GLY GLN ARG TYR LEU ALA TRP SEQRES 23 A 343 SER GLY HIS SER ALA ARG VAL GLY ALA ALA ARG ASP MET SEQRES 24 A 343 ALA ARG ALA GLY VAL SER ILE PRO GLU ILE MET GLN ALA SEQRES 25 A 343 GLY GLY TRP THR ASN VAL ASN ILE VAL MET ASN TYR ILE SEQRES 26 A 343 ARG ASN LEU ASP SER GLU THR GLY ALA MET VAL ARG LEU SEQRES 27 A 343 LEU GLU ASP GLY ASP SEQRES 1 B 343 MET SER ASN LEU LEU THR VAL HIS GLN ASN LEU PRO ALA SEQRES 2 B 343 LEU PRO VAL ASP ALA THR SER ASP GLU VAL ARG LYS ASN SEQRES 3 B 343 LEU MET ASP MET PHE ARG ASP ARG GLN ALA PHE SER GLU SEQRES 4 B 343 HIS THR TRP LYS MET LEU LEU SER VAL CYS ARG SER TRP SEQRES 5 B 343 ALA ALA TRP CYS LYS LEU ASN ASN ARG LYS TRP PHE PRO SEQRES 6 B 343 ALA GLU PRO GLU ASP VAL ARG ASP TYR LEU LEU TYR LEU SEQRES 7 B 343 GLN ALA ARG GLY LEU ALA VAL LYS THR ILE GLN GLN HIS SEQRES 8 B 343 LEU GLY GLN LEU ASN MET LEU HIS ARG ARG SER GLY LEU SEQRES 9 B 343 PRO ARG PRO SER ASP SER ASN ALA VAL SER LEU VAL MET SEQRES 10 B 343 ARG ARG ILE ARG LYS GLU ASN VAL ASP ALA GLY GLU ARG SEQRES 11 B 343 ALA LYS GLN ALA LEU ALA PHE GLU ARG THR ASP PHE ASP SEQRES 12 B 343 GLN VAL ARG SER LEU MET GLU ASN SER ASP ARG CYS GLN SEQRES 13 B 343 ASP ILE ARG ASN LEU ALA PHE LEU GLY ILE ALA TYR ASN SEQRES 14 B 343 THR LEU LEU ARG ILE ALA GLU ILE ALA ARG ILE ARG VAL SEQRES 15 B 343 LYS ASP ILE SER ARG THR ASP GLY GLY ARG MET LEU ILE SEQRES 16 B 343 HIS ILE GLY ARG THR ALA THR LEU VAL SER THR ALA GLY SEQRES 17 B 343 VAL GLU LYS ALA LEU SER LEU GLY VAL THR LYS LEU VAL SEQRES 18 B 343 GLU ARG TRP ILE SER VAL SER GLY VAL ALA ASP ASP PRO SEQRES 19 B 343 ASN ASN TYR LEU PHE CYS ARG VAL ARG LYS ASN GLY VAL SEQRES 20 B 343 ALA ALA PRO SER ALA THR SER GLN LEU SER THR ARG ALA SEQRES 21 B 343 LEU GLU GLY ILE PHE GLU ALA THR HIS ARG LEU ILE TYR SEQRES 22 B 343 GLY ALA LYS ASP ASP SER GLY GLN ARG TYR LEU ALA TRP SEQRES 23 B 343 SER GLY HIS SER ALA ARG VAL GLY ALA ALA ARG ASP MET SEQRES 24 B 343 ALA ARG ALA GLY VAL SER ILE PRO GLU ILE MET GLN ALA SEQRES 25 B 343 GLY GLY TRP THR ASN VAL ASN ILE VAL MET ASN TYR ILE SEQRES 26 B 343 ARG ASN LEU ASP SER GLU THR GLY ALA MET VAL ARG LEU SEQRES 27 B 343 LEU GLU ASP GLY ASP FORMUL 5 HOH *501(H2 O) HELIX 1 1 SER A 20 ASP A 33 1 14 HELIX 2 2 ARG A 34 PHE A 37 5 4 HELIX 3 3 SER A 38 ASN A 59 1 22 HELIX 4 4 GLU A 67 ARG A 81 1 15 HELIX 5 5 ALA A 84 ARG A 101 1 18 HELIX 6 6 ARG A 106 ASP A 109 5 4 HELIX 7 7 SER A 110 ALA A 127 1 18 HELIX 8 8 GLU A 138 GLU A 150 1 13 HELIX 9 9 ARG A 154 LEU A 171 1 18 HELIX 10 10 ARG A 173 ILE A 180 1 8 HELIX 11 11 ARG A 181 LYS A 183 5 3 HELIX 12 12 ASP A 189 GLY A 191 5 3 HELIX 13 13 SER A 214 GLY A 229 1 16 HELIX 14 14 VAL A 230 ASP A 233 5 4 HELIX 15 15 SER A 257 GLY A 274 1 18 HELIX 16 16 HIS A 289 ALA A 302 1 14 HELIX 17 17 SER A 305 GLY A 314 1 10 HELIX 18 18 ASN A 317 ILE A 325 1 9 HELIX 19 19 LEU A 328 THR A 332 5 5 HELIX 20 20 GLY A 333 ASP A 341 1 9 HELIX 21 21 SER B 20 ASP B 33 1 14 HELIX 22 22 ARG B 34 PHE B 37 5 4 HELIX 23 23 SER B 38 ASN B 59 1 22 HELIX 24 24 GLU B 67 ARG B 81 1 15 HELIX 25 25 ALA B 84 ARG B 101 1 18 HELIX 26 26 ARG B 106 ASP B 109 5 4 HELIX 27 27 SER B 110 ALA B 127 1 18 HELIX 28 28 GLU B 138 GLU B 150 1 13 HELIX 29 29 ARG B 154 LEU B 171 1 18 HELIX 30 30 ARG B 173 ILE B 180 1 8 HELIX 31 31 ARG B 181 LYS B 183 5 3 HELIX 32 32 SER B 214 GLY B 229 1 16 HELIX 33 33 VAL B 230 ASP B 233 5 4 HELIX 34 34 SER B 257 GLY B 274 1 18 HELIX 35 35 HIS B 289 ALA B 302 1 14 HELIX 36 36 SER B 305 GLY B 314 1 10 HELIX 37 37 ASN B 317 ILE B 325 1 9 HELIX 38 38 ALA B 334 LEU B 339 1 6 SHEET 1 A 2 ILE A 185 ARG A 187 0 SHEET 2 A 2 MET A 193 ILE A 195 -1 O LEU A 194 N SER A 186 SHEET 1 B 2 ARG A 241 VAL A 242 0 SHEET 2 B 2 ALA A 248 ALA A 249 -1 O ALA A 249 N ARG A 241 SHEET 1 C 3 ILE B 185 ARG B 187 0 SHEET 2 C 3 MET B 193 ARG B 199 -1 O LEU B 194 N SER B 186 SHEET 3 C 3 VAL B 204 ALA B 212 -1 O VAL B 209 N ILE B 197 SHEET 1 D 2 ARG B 241 VAL B 242 0 SHEET 2 D 2 ALA B 248 ALA B 249 -1 O ALA B 249 N ARG B 241 CISPEP 1 GLU B 340 ASP B 341 0 -4.16 CRYST1 107.625 122.130 178.748 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005594 0.00000