data_2HOJ # _entry.id 2HOJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOJ pdb_00002hoj 10.2210/pdb2hoj/pdb NDB UR0099 ? ? RCSB RCSB038579 ? ? WWPDB D_1000038579 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_symmetry' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_symmetry' 39 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2HOJ _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HOK 'Ca, 3.2 Ang resolution, TPP' unspecified PDB 2HOL 'Ba, 2.9 Ang resolution, TPP' unspecified PDB 2HOM '2.85 Ang resolution, TPS' unspecified PDB 2HOO '3.0 Ang resolution, BzTP (BENFOTIAMINE)' unspecified PDB 2HOP '2.5 Ang resolution, pyrithiamine' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Edwards, T.E.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1459 _citation.page_last 1468 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16962976 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edwards, T.E.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thi-box riboswitch' 26860.900 1 ? ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 12 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn 'THIAMINE DIPHOSPHATE' 425.314 1 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'MAGNESIUM ION' MG 4 'THIAMINE DIPHOSPHATE' TPP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;in vitro T7 RNA polymerase with 5'cis-hammerhead ribozyme and 5'-trans VS ribozyme ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 TPP non-polymer . 'THIAMINE DIPHOSPHATE' ? 'C12 H19 N4 O7 P2 S 1' 425.314 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 ? ? ? A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A23 83 91 91 A23 A23 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 115 115 MN MN A . C 2 MN 1 116 116 MN MN A . D 2 MN 1 117 117 MN MN A . E 2 MN 1 118 118 MN MN A . F 2 MN 1 119 119 MN MN A . G 2 MN 1 120 120 MN MN A . H 2 MN 1 121 121 MN MN A . I 2 MN 1 122 122 MN MN A . J 2 MN 1 123 123 MN MN A . K 2 MN 1 124 124 MN MN A . L 2 MN 1 125 125 MN MN A . M 2 MN 1 126 126 MN MN A . N 3 MG 1 127 127 MG MG A . O 3 MG 1 128 128 MG MG A . P 4 TPP 1 114 114 TPP TPP A . Q 5 HOH 1 92 92 HOH HOH A . Q 5 HOH 2 93 93 HOH HOH A . Q 5 HOH 3 94 94 HOH HOH A . Q 5 HOH 4 95 95 HOH HOH A . Q 5 HOH 5 96 96 HOH HOH A . Q 5 HOH 6 97 97 HOH HOH A . Q 5 HOH 7 98 98 HOH HOH A . Q 5 HOH 8 99 99 HOH HOH A . Q 5 HOH 9 100 100 HOH HOH A . Q 5 HOH 10 101 101 HOH HOH A . Q 5 HOH 11 102 102 HOH HOH A . Q 5 HOH 12 103 103 HOH HOH A . Q 5 HOH 13 104 104 HOH HOH A . Q 5 HOH 14 105 105 HOH HOH A . Q 5 HOH 15 106 106 HOH HOH A . Q 5 HOH 16 107 107 HOH HOH A . Q 5 HOH 17 108 108 HOH HOH A . Q 5 HOH 18 109 109 HOH HOH A . Q 5 HOH 19 110 110 HOH HOH A . Q 5 HOH 20 111 111 HOH HOH A . Q 5 HOH 21 112 112 HOH HOH A . Q 5 HOH 22 113 113 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 46 ? N1 ? A U 38 N1 2 1 Y 1 A U 46 ? C2 ? A U 38 C2 3 1 Y 1 A U 46 ? O2 ? A U 38 O2 4 1 Y 1 A U 46 ? N3 ? A U 38 N3 5 1 Y 1 A U 46 ? C4 ? A U 38 C4 6 1 Y 1 A U 46 ? O4 ? A U 38 O4 7 1 Y 1 A U 46 ? C5 ? A U 38 C5 8 1 Y 1 A U 46 ? C6 ? A U 38 C6 9 1 Y 1 A U 54 ? N1 ? A U 46 N1 10 1 Y 1 A U 54 ? C2 ? A U 46 C2 11 1 Y 1 A U 54 ? O2 ? A U 46 O2 12 1 Y 1 A U 54 ? N3 ? A U 46 N3 13 1 Y 1 A U 54 ? C4 ? A U 46 C4 14 1 Y 1 A U 54 ? O4 ? A U 46 O4 15 1 Y 1 A U 54 ? C5 ? A U 46 C5 16 1 Y 1 A U 54 ? C6 ? A U 46 C6 17 1 Y 1 A C 55 ? N1 ? A C 47 N1 18 1 Y 1 A C 55 ? C2 ? A C 47 C2 19 1 Y 1 A C 55 ? O2 ? A C 47 O2 20 1 Y 1 A C 55 ? N3 ? A C 47 N3 21 1 Y 1 A C 55 ? C4 ? A C 47 C4 22 1 Y 1 A C 55 ? N4 ? A C 47 N4 23 1 Y 1 A C 55 ? C5 ? A C 47 C5 24 1 Y 1 A C 55 ? C6 ? A C 47 C6 25 1 Y 1 A U 79 ? N1 ? A U 71 N1 26 1 Y 1 A U 79 ? C2 ? A U 71 C2 27 1 Y 1 A U 79 ? O2 ? A U 71 O2 28 1 Y 1 A U 79 ? N3 ? A U 71 N3 29 1 Y 1 A U 79 ? C4 ? A U 71 C4 30 1 Y 1 A U 79 ? O4 ? A U 71 O4 31 1 Y 1 A U 79 ? C5 ? A U 71 C5 32 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2HOJ _cell.length_a 64.700 _cell.length_b 64.700 _cell.length_c 101.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOJ _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 153 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HOJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;grown: 26% PEG 2000, 10 mM MnCl2, 0.2 M NH4Cl, 50 mM cacodylate pH 6.0; 1.5 mM MgCl2, 0.5 mM TPP, 50 mM KCl, 0.25 mM spermine; cryo: above plus 15% Ficoll 400, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 2000' ? ? ? 1 2 1 MnCl2 ? ? ? 1 3 1 NH4Cl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 KCl ? ? ? 1 6 1 spermine ? ? ? 1 7 1 cacodylate ? ? ? 1 8 1 TPP ? ? ? 1 9 2 'PEG 2000' ? ? ? 1 10 2 MnCl2 ? ? ? 1 11 2 NH4Cl ? ? ? 1 12 2 MgCl2 ? ? ? 1 13 2 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2HOJ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 30 _reflns.number_all 8298 _reflns.number_obs 8398 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.548 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 758 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HOJ _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 30 _refine.pdbx_ls_sigma_F 2.8 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 8656 _refine.ls_number_reflns_obs 8398 _refine.ls_number_reflns_R_free 878 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.257 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HOJ _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.49 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.74 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1661 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1723 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.37 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2HOJ _struct.title 'Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOJ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HOJ _struct_ref.pdbx_db_accession 2HOJ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HOJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HOJ _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 82 "O3'" ? ? ? 1_555 A A23 83 P ? ? A C 90 A A23 91 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A G 13 "O2'" ? ? ? 1_555 O MG . MG ? ? A G 21 A MG 128 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc2 metalc ? ? A G 13 N3 ? ? ? 1_555 O MG . MG ? ? A G 21 A MG 128 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc3 metalc ? ? A G 28 N7 ? ? ? 1_555 H MN . MN ? ? A G 36 A MN 121 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc4 metalc ? ? A G 29 "O5'" ? ? ? 1_555 N MG . MG ? ? A G 37 A MG 127 1_555 ? ? ? ? ? ? ? 3.008 ? ? metalc5 metalc ? ? A G 29 OP2 ? ? ? 1_555 N MG . MG ? ? A G 37 A MG 127 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc6 metalc ? ? A C 30 OP2 ? ? ? 1_555 N MG . MG ? ? A C 38 A MG 127 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc7 metalc ? ? A G 32 N7 ? ? ? 1_555 F MN . MN ? ? A G 40 A MN 119 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc8 metalc ? ? A A 33 N7 ? ? ? 1_555 E MN . MN ? ? A A 41 A MN 118 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc9 metalc ? ? A G 52 O6 ? ? ? 1_555 C MN . MN ? ? A G 60 A MN 116 1_555 ? ? ? ? ? ? ? 2.203 ? ? metalc10 metalc ? ? A C 55 OP1 ? ? ? 1_555 D MN . MN ? ? A C 63 A MN 117 1_555 ? ? ? ? ? ? ? 1.894 ? ? metalc11 metalc ? ? A U 56 OP2 ? ? ? 1_555 D MN . MN ? ? A U 64 A MN 117 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc12 metalc ? ? A U 56 OP1 ? ? ? 5_656 D MN . MN ? ? A U 64 A MN 117 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc13 metalc ? ? A A 61 OP1 ? ? ? 1_555 I MN . MN ? ? A A 69 A MN 122 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc14 metalc ? ? A A 61 N7 ? ? ? 6_566 K MN . MN ? ? A A 69 A MN 124 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc15 metalc ? ? A U 63 "O2'" ? ? ? 1_555 O MG . MG ? ? A U 71 A MG 128 1_555 ? ? ? ? ? ? ? 3.049 ? ? metalc16 metalc ? ? A C 65 OP1 ? ? ? 1_555 O MG . MG ? ? A C 73 A MG 128 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc17 metalc ? ? A G 70 O6 ? ? ? 1_555 C MN . MN ? ? A G 78 A MN 116 1_555 ? ? ? ? ? ? ? 2.457 ? ? metalc18 metalc ? ? A A23 83 O1C ? ? ? 6_566 I MN . MN ? ? A A23 91 A MN 122 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc19 metalc ? ? A A23 83 OP2 ? ? ? 1_555 K MN . MN ? ? A A23 91 A MN 124 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc20 metalc ? ? Q HOH . O ? ? ? 1_555 F MN . MN ? ? A HOH 93 A MN 119 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc21 metalc ? ? Q HOH . O ? ? ? 1_555 E MN . MN ? ? A HOH 96 A MN 118 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc22 metalc ? ? Q HOH . O ? ? ? 1_555 C MN . MN ? ? A HOH 101 A MN 116 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc23 metalc ? ? Q HOH . O ? ? ? 1_555 C MN . MN ? ? A HOH 103 A MN 116 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc24 metalc ? ? Q HOH . O ? ? ? 1_555 B MN . MN ? ? A HOH 104 A MN 115 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc25 metalc ? ? Q HOH . O ? ? ? 1_555 C MN . MN ? ? A HOH 105 A MN 116 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc26 metalc ? ? Q HOH . O ? ? ? 1_555 D MN . MN ? ? A HOH 107 A MN 117 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc27 metalc ? ? Q HOH . O ? ? ? 1_555 B MN . MN ? ? A HOH 109 A MN 115 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc28 metalc ? ? Q HOH . O ? ? ? 1_555 F MN . MN ? ? A HOH 111 A MN 119 1_555 ? ? ? ? ? ? ? 1.829 ? ? metalc29 metalc ? ? Q HOH . O ? ? ? 1_555 B MN . MN ? ? A HOH 112 A MN 115 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc30 metalc ? ? Q HOH . O ? ? ? 1_555 B MN . MN ? ? A HOH 113 A MN 115 1_555 ? ? ? ? ? ? ? 1.891 ? ? metalc31 metalc ? ? P TPP . O1B ? ? ? 1_555 B MN . MN ? ? A TPP 114 A MN 115 1_555 ? ? ? ? ? ? ? 1.883 ? ? metalc32 metalc ? ? P TPP . O2A ? ? ? 1_555 B MN . MN ? ? A TPP 114 A MN 115 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc33 metalc ? ? P TPP . O2B ? ? ? 1_555 C MN . MN ? ? A TPP 114 A MN 116 1_555 ? ? ? ? ? ? ? 2.263 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 17 O4 ? ? ? 1_555 A G 28 N2 ? ? A U 25 A G 36 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog48 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 61 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog53 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog65 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 N3 ? A G 13 ? A G 21 ? 1_555 102.8 ? 2 "O2'" ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 "O2'" ? A U 63 ? A U 71 ? 1_555 75.8 ? 3 N3 ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 "O2'" ? A U 63 ? A U 71 ? 1_555 143.5 ? 4 "O2'" ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 117.7 ? 5 N3 ? A G 13 ? A G 21 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 129.4 ? 6 "O2'" ? A U 63 ? A U 71 ? 1_555 MG ? O MG . ? A MG 128 ? 1_555 OP1 ? A C 65 ? A C 73 ? 1_555 78.8 ? 7 "O5'" ? A G 29 ? A G 37 ? 1_555 MG ? N MG . ? A MG 127 ? 1_555 OP2 ? A G 29 ? A G 37 ? 1_555 49.4 ? 8 "O5'" ? A G 29 ? A G 37 ? 1_555 MG ? N MG . ? A MG 127 ? 1_555 OP2 ? A C 30 ? A C 38 ? 1_555 93.7 ? 9 OP2 ? A G 29 ? A G 37 ? 1_555 MG ? N MG . ? A MG 127 ? 1_555 OP2 ? A C 30 ? A C 38 ? 1_555 132.5 ? 10 N7 ? A G 32 ? A G 40 ? 1_555 MN ? F MN . ? A MN 119 ? 1_555 O ? Q HOH . ? A HOH 93 ? 1_555 94.8 ? 11 N7 ? A G 32 ? A G 40 ? 1_555 MN ? F MN . ? A MN 119 ? 1_555 O ? Q HOH . ? A HOH 111 ? 1_555 96.3 ? 12 O ? Q HOH . ? A HOH 93 ? 1_555 MN ? F MN . ? A MN 119 ? 1_555 O ? Q HOH . ? A HOH 111 ? 1_555 83.5 ? 13 N7 ? A A 33 ? A A 41 ? 1_555 MN ? E MN . ? A MN 118 ? 1_555 O ? Q HOH . ? A HOH 96 ? 1_555 91.8 ? 14 O6 ? A G 52 ? A G 60 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 76.8 ? 15 O6 ? A G 52 ? A G 60 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 101 ? 1_555 100.0 ? 16 O6 ? A G 70 ? A G 78 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 101 ? 1_555 87.1 ? 17 O6 ? A G 52 ? A G 60 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 103 ? 1_555 79.9 ? 18 O6 ? A G 70 ? A G 78 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 103 ? 1_555 90.0 ? 19 O ? Q HOH . ? A HOH 101 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 103 ? 1_555 177.1 ? 20 O6 ? A G 52 ? A G 60 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 105 ? 1_555 87.9 ? 21 O6 ? A G 70 ? A G 78 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 105 ? 1_555 161.5 ? 22 O ? Q HOH . ? A HOH 101 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 105 ? 1_555 85.3 ? 23 O ? Q HOH . ? A HOH 103 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O ? Q HOH . ? A HOH 105 ? 1_555 97.7 ? 24 O6 ? A G 52 ? A G 60 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O2B ? P TPP . ? A TPP 114 ? 1_555 156.5 ? 25 O6 ? A G 70 ? A G 78 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O2B ? P TPP . ? A TPP 114 ? 1_555 82.5 ? 26 O ? Q HOH . ? A HOH 101 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O2B ? P TPP . ? A TPP 114 ? 1_555 90.0 ? 27 O ? Q HOH . ? A HOH 103 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O2B ? P TPP . ? A TPP 114 ? 1_555 89.0 ? 28 O ? Q HOH . ? A HOH 105 ? 1_555 MN ? C MN . ? A MN 116 ? 1_555 O2B ? P TPP . ? A TPP 114 ? 1_555 114.3 ? 29 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? D MN . ? A MN 117 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 91.9 ? 30 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? D MN . ? A MN 117 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 102.7 ? 31 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? D MN . ? A MN 117 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 92.5 ? 32 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? D MN . ? A MN 117 ? 1_555 O ? Q HOH . ? A HOH 107 ? 1_555 155.5 ? 33 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? D MN . ? A MN 117 ? 1_555 O ? Q HOH . ? A HOH 107 ? 1_555 75.4 ? 34 OP1 ? A U 56 ? A U 64 ? 5_656 MN ? D MN . ? A MN 117 ? 1_555 O ? Q HOH . ? A HOH 107 ? 1_555 98.8 ? 35 OP1 ? A A 61 ? A A 69 ? 1_555 MN ? I MN . ? A MN 122 ? 1_555 O1C ? A A23 83 ? A A23 91 ? 6_566 126.8 ? 36 N7 ? A A 61 ? A A 69 ? 6_566 MN ? K MN . ? A MN 124 ? 1_555 OP2 ? A A23 83 ? A A23 91 ? 1_555 101.0 ? 37 O ? Q HOH . ? A HOH 104 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 109 ? 1_555 74.6 ? 38 O ? Q HOH . ? A HOH 104 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 112 ? 1_555 86.3 ? 39 O ? Q HOH . ? A HOH 109 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 112 ? 1_555 65.5 ? 40 O ? Q HOH . ? A HOH 104 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 113 ? 1_555 104.9 ? 41 O ? Q HOH . ? A HOH 109 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 113 ? 1_555 170.6 ? 42 O ? Q HOH . ? A HOH 112 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O ? Q HOH . ? A HOH 113 ? 1_555 105.2 ? 43 O ? Q HOH . ? A HOH 104 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O1B ? P TPP . ? A TPP 114 ? 1_555 100.6 ? 44 O ? Q HOH . ? A HOH 109 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O1B ? P TPP . ? A TPP 114 ? 1_555 52.9 ? 45 O ? Q HOH . ? A HOH 112 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O1B ? P TPP . ? A TPP 114 ? 1_555 112.4 ? 46 O ? Q HOH . ? A HOH 113 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O1B ? P TPP . ? A TPP 114 ? 1_555 135.5 ? 47 O ? Q HOH . ? A HOH 104 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O2A ? P TPP . ? A TPP 114 ? 1_555 166.6 ? 48 O ? Q HOH . ? A HOH 109 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O2A ? P TPP . ? A TPP 114 ? 1_555 110.7 ? 49 O ? Q HOH . ? A HOH 112 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O2A ? P TPP . ? A TPP 114 ? 1_555 107.1 ? 50 O ? Q HOH . ? A HOH 113 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O2A ? P TPP . ? A TPP 114 ? 1_555 71.9 ? 51 O1B ? P TPP . ? A TPP 114 ? 1_555 MN ? B MN . ? A MN 115 ? 1_555 O2A ? P TPP . ? A TPP 114 ? 1_555 74.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 115 ? 5 'BINDING SITE FOR RESIDUE MN A 115' AC2 Software A MN 116 ? 7 'BINDING SITE FOR RESIDUE MN A 116' AC3 Software A MN 117 ? 4 'BINDING SITE FOR RESIDUE MN A 117' AC4 Software A MN 118 ? 2 'BINDING SITE FOR RESIDUE MN A 118' AC5 Software A MN 119 ? 3 'BINDING SITE FOR RESIDUE MN A 119' AC6 Software A MN 120 ? 2 'BINDING SITE FOR RESIDUE MN A 120' AC7 Software A MN 121 ? 1 'BINDING SITE FOR RESIDUE MN A 121' AC8 Software A MN 122 ? 2 'BINDING SITE FOR RESIDUE MN A 122' AC9 Software A MN 124 ? 2 'BINDING SITE FOR RESIDUE MN A 124' BC1 Software A MN 126 ? 1 'BINDING SITE FOR RESIDUE MN A 126' BC2 Software A MG 127 ? 2 'BINDING SITE FOR RESIDUE MG A 127' BC3 Software A MG 128 ? 4 'BINDING SITE FOR RESIDUE MG A 128' BC4 Software A TPP 114 ? 18 'BINDING SITE FOR RESIDUE TPP A 114' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH Q . ? HOH A 104 . ? 1_555 ? 2 AC1 5 HOH Q . ? HOH A 109 . ? 1_555 ? 3 AC1 5 HOH Q . ? HOH A 112 . ? 1_555 ? 4 AC1 5 HOH Q . ? HOH A 113 . ? 1_555 ? 5 AC1 5 TPP P . ? TPP A 114 . ? 1_555 ? 6 AC2 7 U A 51 ? U A 59 . ? 1_555 ? 7 AC2 7 G A 52 ? G A 60 . ? 1_555 ? 8 AC2 7 G A 70 ? G A 78 . ? 1_555 ? 9 AC2 7 HOH Q . ? HOH A 101 . ? 1_555 ? 10 AC2 7 HOH Q . ? HOH A 103 . ? 1_555 ? 11 AC2 7 HOH Q . ? HOH A 105 . ? 1_555 ? 12 AC2 7 TPP P . ? TPP A 114 . ? 1_555 ? 13 AC3 4 C A 55 ? C A 63 . ? 1_555 ? 14 AC3 4 U A 56 ? U A 64 . ? 5_656 ? 15 AC3 4 U A 56 ? U A 64 . ? 1_555 ? 16 AC3 4 HOH Q . ? HOH A 107 . ? 1_555 ? 17 AC4 2 A A 33 ? A A 41 . ? 1_555 ? 18 AC4 2 HOH Q . ? HOH A 96 . ? 1_555 ? 19 AC5 3 G A 32 ? G A 40 . ? 1_555 ? 20 AC5 3 HOH Q . ? HOH A 93 . ? 1_555 ? 21 AC5 3 HOH Q . ? HOH A 111 . ? 1_555 ? 22 AC6 2 A A 72 ? A A 80 . ? 1_555 ? 23 AC6 2 G A 73 ? G A 81 . ? 1_555 ? 24 AC7 1 G A 28 ? G A 36 . ? 1_555 ? 25 AC8 2 A A 61 ? A A 69 . ? 1_555 ? 26 AC8 2 A23 A 83 ? A23 A 91 . ? 6_566 ? 27 AC9 2 A A 61 ? A A 69 . ? 6_566 ? 28 AC9 2 A23 A 83 ? A23 A 91 . ? 1_555 ? 29 BC1 1 G A 58 ? G A 66 . ? 5_656 ? 30 BC2 2 G A 29 ? G A 37 . ? 1_555 ? 31 BC2 2 C A 30 ? C A 38 . ? 1_555 ? 32 BC3 4 G A 13 ? G A 21 . ? 1_555 ? 33 BC3 4 C A 14 ? C A 22 . ? 1_555 ? 34 BC3 4 U A 63 ? U A 71 . ? 1_555 ? 35 BC3 4 C A 65 ? C A 73 . ? 1_555 ? 36 BC4 18 G A 11 ? G A 19 . ? 1_555 ? 37 BC4 18 U A 12 ? U A 20 . ? 1_555 ? 38 BC4 18 G A 32 ? G A 40 . ? 1_555 ? 39 BC4 18 G A 34 ? G A 42 . ? 1_555 ? 40 BC4 18 A A 35 ? A A 43 . ? 1_555 ? 41 BC4 18 C A 49 ? C A 57 . ? 1_555 ? 42 BC4 18 C A 50 ? C A 58 . ? 1_555 ? 43 BC4 18 G A 64 ? G A 72 . ? 1_555 ? 44 BC4 18 C A 65 ? C A 73 . ? 1_555 ? 45 BC4 18 C A 69 ? C A 77 . ? 1_555 ? 46 BC4 18 G A 70 ? G A 78 . ? 1_555 ? 47 BC4 18 HOH Q . ? HOH A 96 . ? 1_555 ? 48 BC4 18 HOH Q . ? HOH A 103 . ? 1_555 ? 49 BC4 18 HOH Q . ? HOH A 106 . ? 1_555 ? 50 BC4 18 HOH Q . ? HOH A 109 . ? 1_555 ? 51 BC4 18 HOH Q . ? HOH A 113 . ? 1_555 ? 52 BC4 18 MN B . ? MN A 115 . ? 1_555 ? 53 BC4 18 MN C . ? MN A 116 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1B A TPP 114 ? ? O A HOH 109 ? ? 1.99 2 1 O2 A C 24 ? ? N6 A A 35 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O6 A G 31 ? ? 1_555 O6 A G 31 ? ? 5_556 1.92 2 1 N2 A G 31 ? ? 1_555 N2 A G 31 ? ? 5_556 2.17 3 1 N1 A G 31 ? ? 1_555 N1 A G 31 ? ? 5_556 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A A 44 ? ? "C3'" A A 44 ? ? "O3'" A A 44 ? ? 124.69 113.70 10.99 1.60 N 2 1 "C2'" A G 78 ? ? "C3'" A G 78 ? ? "O3'" A G 78 ? ? 125.06 113.70 11.36 1.60 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 26 ? A U 18 2 1 Y 1 A C 27 ? A C 19 3 1 Y 1 A U 28 ? A U 20 4 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 MG MG MG N N 153 MN MN MN N N 154 TPP "N1'" N Y N 155 TPP "C2'" C Y N 156 TPP CM2 C N N 157 TPP "N3'" N Y N 158 TPP "C4'" C Y N 159 TPP "N4'" N N N 160 TPP "C5'" C Y N 161 TPP "C6'" C Y N 162 TPP "C7'" C N N 163 TPP N3 N Y N 164 TPP C2 C Y N 165 TPP S1 S Y N 166 TPP C5 C Y N 167 TPP C4 C Y N 168 TPP CM4 C N N 169 TPP C6 C N N 170 TPP C7 C N N 171 TPP O7 O N N 172 TPP PA P N S 173 TPP O1A O N N 174 TPP O2A O N N 175 TPP O3A O N N 176 TPP PB P N N 177 TPP O1B O N N 178 TPP O2B O N N 179 TPP O3B O N N 180 TPP HM21 H N N 181 TPP HM22 H N N 182 TPP HM23 H N N 183 TPP HN41 H N N 184 TPP HN42 H N N 185 TPP "H6'" H N N 186 TPP "H7'1" H N N 187 TPP "H7'2" H N N 188 TPP H2 H N N 189 TPP HM41 H N N 190 TPP HM42 H N N 191 TPP HM43 H N N 192 TPP H61 H N N 193 TPP H62 H N N 194 TPP H71 H N N 195 TPP H72 H N N 196 TPP HOA2 H N N 197 TPP HOB2 H N N 198 TPP HOB3 H N N 199 U OP3 O N N 200 U P P N N 201 U OP1 O N N 202 U OP2 O N N 203 U "O5'" O N N 204 U "C5'" C N N 205 U "C4'" C N R 206 U "O4'" O N N 207 U "C3'" C N S 208 U "O3'" O N N 209 U "C2'" C N R 210 U "O2'" O N N 211 U "C1'" C N R 212 U N1 N N N 213 U C2 C N N 214 U O2 O N N 215 U N3 N N N 216 U C4 C N N 217 U O4 O N N 218 U C5 C N N 219 U C6 C N N 220 U HOP3 H N N 221 U HOP2 H N N 222 U "H5'" H N N 223 U "H5''" H N N 224 U "H4'" H N N 225 U "H3'" H N N 226 U "HO3'" H N N 227 U "H2'" H N N 228 U "HO2'" H N N 229 U "H1'" H N N 230 U H3 H N N 231 U H5 H N N 232 U H6 H N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 TPP "N1'" "C2'" doub Y N 160 TPP "N1'" "C6'" sing Y N 161 TPP "C2'" CM2 sing N N 162 TPP "C2'" "N3'" sing Y N 163 TPP CM2 HM21 sing N N 164 TPP CM2 HM22 sing N N 165 TPP CM2 HM23 sing N N 166 TPP "N3'" "C4'" doub Y N 167 TPP "C4'" "N4'" sing N N 168 TPP "C4'" "C5'" sing Y N 169 TPP "N4'" HN41 sing N N 170 TPP "N4'" HN42 sing N N 171 TPP "C5'" "C6'" doub Y N 172 TPP "C5'" "C7'" sing N N 173 TPP "C6'" "H6'" sing N N 174 TPP "C7'" N3 sing N N 175 TPP "C7'" "H7'1" sing N N 176 TPP "C7'" "H7'2" sing N N 177 TPP N3 C2 doub Y N 178 TPP N3 C4 sing Y N 179 TPP C2 S1 sing Y N 180 TPP C2 H2 sing N N 181 TPP S1 C5 sing Y N 182 TPP C5 C4 doub Y N 183 TPP C5 C6 sing N N 184 TPP C4 CM4 sing N N 185 TPP CM4 HM41 sing N N 186 TPP CM4 HM42 sing N N 187 TPP CM4 HM43 sing N N 188 TPP C6 C7 sing N N 189 TPP C6 H61 sing N N 190 TPP C6 H62 sing N N 191 TPP C7 O7 sing N N 192 TPP C7 H71 sing N N 193 TPP C7 H72 sing N N 194 TPP O7 PA sing N N 195 TPP PA O1A doub N N 196 TPP PA O2A sing N N 197 TPP PA O3A sing N N 198 TPP O2A HOA2 sing N N 199 TPP O3A PB sing N N 200 TPP PB O1B doub N N 201 TPP PB O2B sing N N 202 TPP PB O3B sing N N 203 TPP O2B HOB2 sing N N 204 TPP O3B HOB3 sing N N 205 U OP3 P sing N N 206 U OP3 HOP3 sing N N 207 U P OP1 doub N N 208 U P OP2 sing N N 209 U P "O5'" sing N N 210 U OP2 HOP2 sing N N 211 U "O5'" "C5'" sing N N 212 U "C5'" "C4'" sing N N 213 U "C5'" "H5'" sing N N 214 U "C5'" "H5''" sing N N 215 U "C4'" "O4'" sing N N 216 U "C4'" "C3'" sing N N 217 U "C4'" "H4'" sing N N 218 U "O4'" "C1'" sing N N 219 U "C3'" "O3'" sing N N 220 U "C3'" "C2'" sing N N 221 U "C3'" "H3'" sing N N 222 U "O3'" "HO3'" sing N N 223 U "C2'" "O2'" sing N N 224 U "C2'" "C1'" sing N N 225 U "C2'" "H2'" sing N N 226 U "O2'" "HO2'" sing N N 227 U "C1'" N1 sing N N 228 U "C1'" "H1'" sing N N 229 U N1 C2 sing N N 230 U N1 C6 sing N N 231 U C2 O2 doub N N 232 U C2 N3 sing N N 233 U N3 C4 sing N N 234 U N3 H3 sing N N 235 U C4 O4 doub N N 236 U C4 C5 sing N N 237 U C5 C6 doub N N 238 U C5 H5 sing N N 239 U C6 H6 sing N N 240 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOJ 'double helix' 2HOJ 'a-form double helix' 2HOJ 'hairpin loop' 2HOJ 'bulge loop' 2HOJ 'mismatched base pair' 2HOJ 'internal loop' 2HOJ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 -0.295 -0.077 0.307 5.693 -9.518 -1.616 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 0.059 -0.172 0.042 4.387 -15.692 -1.297 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.227 -0.153 0.052 -1.332 -12.648 1.727 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.436 0.011 0.036 -3.737 -15.823 0.680 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.014 -0.141 0.148 1.149 -15.306 2.427 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 0.016 0.144 0.329 -13.783 -11.215 3.003 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 -0.015 -0.075 0.244 6.183 -14.505 -0.365 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.192 0.099 0.127 -2.095 -13.754 6.223 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.356 0.141 0.367 -13.787 -9.540 7.443 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.146 -0.009 0.258 -14.788 -15.360 -2.450 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.342 1.508 -0.406 -2.481 -17.885 -17.373 11 A_G19:A47_A A 19 ? A 47 ? 8 ? 1 A U 12 1_555 A A 37 1_555 0.786 0.040 -0.292 12.601 10.730 4.772 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A G 28 1_555 A C 15 1_555 -0.820 -0.290 -0.164 4.917 -9.141 4.649 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.573 -0.174 -0.330 -8.462 -8.372 2.950 14 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.480 0.020 0.487 -8.464 1.513 -5.965 15 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.112 -2.134 0.573 8.854 9.472 -97.267 16 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 6.284 -5.355 0.347 -21.616 22.876 163.954 17 A_A53:A84_A A 53 ? A 84 ? ? ? 1 A A 48 1_555 A G 75 1_555 -6.767 -4.556 0.506 12.024 -19.035 -9.251 18 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 0.761 -0.216 -0.346 15.483 -17.985 0.509 19 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.162 -0.423 0.414 -2.141 -14.674 -1.981 20 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 -0.014 0.079 0.225 -12.247 -15.099 1.885 21 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.272 3.339 0.070 -8.512 7.025 -97.777 22 A_G60:G78_A A 60 ? A 78 ? 6 ? 1 A A 53 1_555 A C 69 1_555 -2.476 2.758 -0.291 -4.690 -14.145 100.710 23 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.111 -0.240 0.124 10.257 -17.463 2.773 24 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 -0.392 0.123 -0.062 9.589 -16.140 9.058 25 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 0.107 0.019 0.064 1.881 -12.185 1.559 26 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 0.079 -0.210 -0.279 -8.305 -15.671 1.158 27 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.149 -1.339 3.216 2.316 1.456 37.019 -2.294 0.068 3.166 2.290 -3.642 37.116 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.323 -1.675 3.332 0.511 8.656 31.599 -4.395 -0.488 2.793 15.532 -0.917 32.738 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.368 -1.243 3.361 -0.476 1.320 32.659 -2.442 0.570 3.314 2.347 0.847 32.688 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 0.083 -1.329 3.040 -1.000 4.535 32.497 -3.055 -0.302 2.830 8.053 1.775 32.818 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.266 -0.878 3.475 1.649 8.073 34.011 -2.723 -0.186 3.198 13.556 -2.769 34.966 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.297 -0.688 2.790 0.992 -0.473 39.465 -0.971 -1.820 2.828 -0.701 -1.468 39.480 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.991 -1.996 3.324 -1.012 12.606 31.027 -5.339 -1.872 2.327 22.432 1.801 33.447 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.586 -1.709 3.469 -3.783 -0.246 33.753 -2.884 0.354 3.524 -0.422 6.490 33.959 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.334 -1.604 3.211 3.794 7.386 32.938 -3.843 1.135 2.743 12.776 -6.563 33.940 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.050 -0.783 2.958 8.369 0.105 33.499 -1.334 2.895 2.625 0.178 -14.245 34.500 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.108 0.677 3.075 1.481 14.779 12.627 -5.574 0.440 2.519 49.598 -4.969 19.472 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.552 -1.811 3.583 -3.488 9.571 36.261 -4.097 0.386 3.062 15.018 5.473 37.619 12 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.484 -1.906 3.441 -2.021 5.352 38.723 -3.500 0.476 3.180 8.017 3.028 39.127 13 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.017 -1.241 2.953 11.957 7.025 68.515 -1.292 2.990 2.344 6.175 -10.511 69.736 14 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.146 -2.059 0.241 151.535 -82.760 -44.292 1.219 -0.732 0.921 42.475 77.772 -173.204 15 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.136 -0.766 3.505 0.320 9.683 67.504 -1.071 -1.002 3.387 8.668 -0.286 68.114 16 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.606 -1.997 3.579 -6.531 11.821 26.953 -6.253 -0.164 2.572 23.574 13.026 30.091 17 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.123 -1.218 3.359 -0.050 7.556 39.170 -2.654 -0.187 3.081 11.144 0.073 39.864 18 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 1.917 -1.562 2.815 12.412 7.632 91.424 -1.211 -1.121 2.894 5.304 -8.626 92.323 19 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.661 1.668 -0.266 24.457 -165.998 -90.505 -0.749 1.347 0.697 84.741 12.485 -171.412 20 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -2.623 -1.868 -2.139 99.724 -141.223 74.628 -1.628 0.823 -1.288 -71.755 -50.669 174.342 21 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 0.268 -1.451 3.275 -0.370 2.052 29.332 -3.292 -0.607 3.165 4.046 0.729 29.405 22 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.089 -1.257 3.476 -0.081 8.428 33.774 -3.412 0.137 3.083 14.233 0.136 34.780 23 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.554 -1.821 3.353 5.928 8.202 33.860 -4.190 -0.056 2.900 13.707 -9.907 35.298 24 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _atom_sites.entry_id 2HOJ _atom_sites.fract_transf_matrix[1][1] 0.015456 _atom_sites.fract_transf_matrix[1][2] 0.008923 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017847 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009814 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG MN N O P S # loop_