data_2HOO # _entry.id 2HOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOO pdb_00002hoo 10.2210/pdb2hoo/pdb NDB UR0103 ? ? RCSB RCSB038584 ? ? WWPDB D_1000038584 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2HOO _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HOJ 'Mn, 2.5 Ang resolution, TPP' unspecified PDB 2HOK 'Ca, 3.2 Ang resolution, TPP' unspecified PDB 2HOL 'Ba, 2.9 Ang resolution, TPP' unspecified PDB 2HOM '2.85 Ang resolution, TPS' unspecified PDB 2HOP '2.5 Ang resolution, pyrithiamine' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Edwards, T.E.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1459 _citation.page_last 1468 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16962976 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edwards, T.E.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thi-box riboswitch' 26798.936 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 3 non-polymer syn 'S-BENZOYLTHIAMINE O-MONOPHOSPHATE' 468.464 1 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'S-BENZOYLTHIAMINE O-MONOPHOSPHATE' BFT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;in vitro T7 RNA polymerase with 5'cis-hammerhead ribozyme and 5'-trans VS ribozyme ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BFT non-polymer . 'S-BENZOYLTHIAMINE O-MONOPHOSPHATE' BENFOTIAMINE 'C19 H25 N4 O6 P S' 468.464 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 27 C C A . n A 1 20 U 20 28 28 U U A . n A 1 21 G 21 29 29 G G A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A 83 91 91 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 96 96 CA CA A . C 2 CA 1 97 97 CA CA A . D 2 CA 1 98 98 CA CA A . E 2 CA 1 99 99 CA CA A . F 2 CA 1 100 100 CA CA A . G 2 CA 1 101 101 CA CA A . H 2 CA 1 102 102 CA CA A . I 3 BFT 1 95 95 BFT BFT A . J 4 HOH 1 92 92 HOH HOH A . J 4 HOH 2 93 93 HOH HOH A . J 4 HOH 3 94 94 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 26 ? N1 ? A U 18 N1 2 1 Y 1 A U 26 ? C2 ? A U 18 C2 3 1 Y 1 A U 26 ? O2 ? A U 18 O2 4 1 Y 1 A U 26 ? N3 ? A U 18 N3 5 1 Y 1 A U 26 ? C4 ? A U 18 C4 6 1 Y 1 A U 26 ? O4 ? A U 18 O4 7 1 Y 1 A U 26 ? C5 ? A U 18 C5 8 1 Y 1 A U 26 ? C6 ? A U 18 C6 9 1 Y 1 A C 27 ? N1 ? A C 19 N1 10 1 Y 1 A C 27 ? C2 ? A C 19 C2 11 1 Y 1 A C 27 ? O2 ? A C 19 O2 12 1 Y 1 A C 27 ? N3 ? A C 19 N3 13 1 Y 1 A C 27 ? C4 ? A C 19 C4 14 1 Y 1 A C 27 ? N4 ? A C 19 N4 15 1 Y 1 A C 27 ? C5 ? A C 19 C5 16 1 Y 1 A C 27 ? C6 ? A C 19 C6 17 1 Y 1 A U 28 ? N1 ? A U 20 N1 18 1 Y 1 A U 28 ? C2 ? A U 20 C2 19 1 Y 1 A U 28 ? O2 ? A U 20 O2 20 1 Y 1 A U 28 ? N3 ? A U 20 N3 21 1 Y 1 A U 28 ? C4 ? A U 20 C4 22 1 Y 1 A U 28 ? O4 ? A U 20 O4 23 1 Y 1 A U 28 ? C5 ? A U 20 C5 24 1 Y 1 A U 28 ? C6 ? A U 20 C6 25 1 Y 1 A G 31 ? N9 ? A G 23 N9 26 1 Y 1 A G 31 ? C8 ? A G 23 C8 27 1 Y 1 A G 31 ? N7 ? A G 23 N7 28 1 Y 1 A G 31 ? C5 ? A G 23 C5 29 1 Y 1 A G 31 ? C6 ? A G 23 C6 30 1 Y 1 A G 31 ? O6 ? A G 23 O6 31 1 Y 1 A G 31 ? N1 ? A G 23 N1 32 1 Y 1 A G 31 ? C2 ? A G 23 C2 33 1 Y 1 A G 31 ? N2 ? A G 23 N2 34 1 Y 1 A G 31 ? N3 ? A G 23 N3 35 1 Y 1 A G 31 ? C4 ? A G 23 C4 36 1 Y 1 A U 32 ? N1 ? A U 24 N1 37 1 Y 1 A U 32 ? C2 ? A U 24 C2 38 1 Y 1 A U 32 ? O2 ? A U 24 O2 39 1 Y 1 A U 32 ? N3 ? A U 24 N3 40 1 Y 1 A U 32 ? C4 ? A U 24 C4 41 1 Y 1 A U 32 ? O4 ? A U 24 O4 42 1 Y 1 A U 32 ? C5 ? A U 24 C5 43 1 Y 1 A U 32 ? C6 ? A U 24 C6 44 1 Y 1 A G 33 ? N9 ? A G 25 N9 45 1 Y 1 A G 33 ? C8 ? A G 25 C8 46 1 Y 1 A G 33 ? N7 ? A G 25 N7 47 1 Y 1 A G 33 ? C5 ? A G 25 C5 48 1 Y 1 A G 33 ? C6 ? A G 25 C6 49 1 Y 1 A G 33 ? O6 ? A G 25 O6 50 1 Y 1 A G 33 ? N1 ? A G 25 N1 51 1 Y 1 A G 33 ? C2 ? A G 25 C2 52 1 Y 1 A G 33 ? N2 ? A G 25 N2 53 1 Y 1 A G 33 ? N3 ? A G 25 N3 54 1 Y 1 A G 33 ? C4 ? A G 25 C4 55 1 Y 1 A U 46 ? N1 ? A U 38 N1 56 1 Y 1 A U 46 ? C2 ? A U 38 C2 57 1 Y 1 A U 46 ? O2 ? A U 38 O2 58 1 Y 1 A U 46 ? N3 ? A U 38 N3 59 1 Y 1 A U 46 ? C4 ? A U 38 C4 60 1 Y 1 A U 46 ? O4 ? A U 38 O4 61 1 Y 1 A U 46 ? C5 ? A U 38 C5 62 1 Y 1 A U 46 ? C6 ? A U 38 C6 63 1 Y 1 A C 55 ? N1 ? A C 47 N1 64 1 Y 1 A C 55 ? C2 ? A C 47 C2 65 1 Y 1 A C 55 ? O2 ? A C 47 O2 66 1 Y 1 A C 55 ? N3 ? A C 47 N3 67 1 Y 1 A C 55 ? C4 ? A C 47 C4 68 1 Y 1 A C 55 ? N4 ? A C 47 N4 69 1 Y 1 A C 55 ? C5 ? A C 47 C5 70 1 Y 1 A C 55 ? C6 ? A C 47 C6 71 1 Y 1 A U 62 ? N1 ? A U 54 N1 72 1 Y 1 A U 62 ? C2 ? A U 54 C2 73 1 Y 1 A U 62 ? O2 ? A U 54 O2 74 1 Y 1 A U 62 ? N3 ? A U 54 N3 75 1 Y 1 A U 62 ? C4 ? A U 54 C4 76 1 Y 1 A U 62 ? O4 ? A U 54 O4 77 1 Y 1 A U 62 ? C5 ? A U 54 C5 78 1 Y 1 A U 62 ? C6 ? A U 54 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 2HOO _cell.length_a 61.400 _cell.length_b 61.400 _cell.length_c 102.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOO _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 153 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HOO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details ;growth: 29% PEG 2000, 0.2 M NH4Cl, 8 mM CaCl2, 0.2 mM Na2WO4, 50 mM cacodylate pH 6.0; 0.25 mM BzTP, 0.25 mM spermine, 1.5 mM MgCl2, 50 mM KCl; cryo: above with 15% w/v sucrose; 600 x 70 x 70 um xtal, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 6.00 ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 2000' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 NH4Cl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 KCl ? ? ? 1 6 1 Na2WO4 ? ? ? 1 7 1 spermine ? ? ? 1 8 1 cacodylate ? ? ? 1 9 1 BzTP ? ? ? 1 10 2 'PEG 2000' ? ? ? 1 11 2 CaCl2 ? ? ? 1 12 2 NH4Cl ? ? ? 1 13 2 MgCl2 ? ? ? 1 14 2 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.214698 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 1.214698 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2HOO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 3.000 _reflns.number_obs 4293 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.500 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.10 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.391 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.500 _reflns_shell.pdbx_redundancy 4.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HOO _refine.ls_number_reflns_obs 4293 _refine.ls_number_reflns_all 4622 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 92.9 _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 450 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 80.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HOO _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.39 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1695 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.32 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2HOO _struct.title 'Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOO _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; riboswitch; Benfotiamine, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HOO _struct_ref.pdbx_db_accession 2HOO _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HOO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HOO _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 12 "O2'" ? ? ? 1_555 F CA . CA ? ? A U 20 A CA 100 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc2 metalc ? ? A A 26 OP2 ? ? ? 1_555 G CA . CA ? ? A A 34 A CA 101 1_555 ? ? ? ? ? ? ? 3.395 ? ? metalc3 metalc ? ? A A 27 OP2 ? ? ? 1_555 G CA . CA ? ? A A 35 A CA 101 1_555 ? ? ? ? ? ? ? 2.977 ? ? metalc4 metalc ? ? A A 27 "O5'" ? ? ? 1_555 G CA . CA ? ? A A 35 A CA 101 1_555 ? ? ? ? ? ? ? 3.238 ? ? metalc5 metalc ? ? A G 28 OP2 ? ? ? 1_555 G CA . CA ? ? A G 36 A CA 101 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc6 metalc ? ? A C 47 OP1 ? ? ? 1_555 H CA . CA ? ? A C 55 A CA 102 1_555 ? ? ? ? ? ? ? 2.674 ? ? metalc7 metalc ? ? A U 51 O4 ? ? ? 1_555 B CA . CA ? ? A U 59 A CA 96 1_555 ? ? ? ? ? ? ? 3.173 ? ? metalc8 metalc ? ? A G 52 O6 ? ? ? 1_555 B CA . CA ? ? A G 60 A CA 96 1_555 ? ? ? ? ? ? ? 2.459 ? ? metalc9 metalc ? ? A G 64 N2 ? ? ? 1_555 C CA . CA ? ? A G 72 A CA 97 1_555 ? ? ? ? ? ? ? 3.191 ? ? metalc10 metalc ? ? A C 69 N4 ? ? ? 1_555 C CA . CA ? ? A C 77 A CA 97 1_555 ? ? ? ? ? ? ? 3.176 ? ? metalc11 metalc ? ? A G 70 O6 ? ? ? 1_555 B CA . CA ? ? A G 78 A CA 96 1_555 ? ? ? ? ? ? ? 1.978 ? ? metalc12 metalc ? ? A G 70 N1 ? ? ? 1_555 B CA . CA ? ? A G 78 A CA 96 1_555 ? ? ? ? ? ? ? 3.361 ? ? metalc13 metalc ? ? A A 72 OP1 ? ? ? 1_555 D CA . CA ? ? A A 80 A CA 98 1_555 ? ? ? ? ? ? ? 2.926 ? ? metalc14 metalc ? ? A G 73 OP2 ? ? ? 1_555 D CA . CA ? ? A G 81 A CA 98 1_555 ? ? ? ? ? ? ? 3.224 ? ? metalc15 metalc ? ? J HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 92 A CA 97 1_555 ? ? ? ? ? ? ? 3.313 ? ? metalc16 metalc ? ? J HOH . O ? ? ? 1_555 B CA . CA ? ? A HOH 93 A CA 96 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc17 metalc ? ? I BFT . O3 ? ? ? 1_555 B CA . CA ? ? A BFT 95 A CA 96 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc18 metalc ? ? I BFT . O1 ? ? ? 1_555 C CA . CA ? ? A BFT 95 A CA 97 1_555 ? ? ? ? ? ? ? 3.362 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog29 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog30 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog35 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog36 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A U 17 O4 ? ? ? 1_555 A G 28 N2 ? ? A U 25 A G 36 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 61 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 45 N6 ? ? ? 1_555 A A 76 N7 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog48 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog49 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog50 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog51 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog66 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 26 ? A A 34 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 OP2 ? A A 27 ? A A 35 ? 1_555 53.2 ? 2 OP2 ? A A 26 ? A A 34 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 "O5'" ? A A 27 ? A A 35 ? 1_555 93.0 ? 3 OP2 ? A A 27 ? A A 35 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 "O5'" ? A A 27 ? A A 35 ? 1_555 47.0 ? 4 OP2 ? A A 26 ? A A 34 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 OP2 ? A G 28 ? A G 36 ? 1_555 167.1 ? 5 OP2 ? A A 27 ? A A 35 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 OP2 ? A G 28 ? A G 36 ? 1_555 115.7 ? 6 "O5'" ? A A 27 ? A A 35 ? 1_555 CA ? G CA . ? A CA 101 ? 1_555 OP2 ? A G 28 ? A G 36 ? 1_555 74.1 ? 7 O4 ? A U 51 ? A U 59 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O6 ? A G 52 ? A G 60 ? 1_555 60.0 ? 8 O4 ? A U 51 ? A U 59 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 89.8 ? 9 O6 ? A G 52 ? A G 60 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 99.7 ? 10 O4 ? A U 51 ? A U 59 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 N1 ? A G 70 ? A G 78 ? 1_555 97.6 ? 11 O6 ? A G 52 ? A G 60 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 N1 ? A G 70 ? A G 78 ? 1_555 137.5 ? 12 O6 ? A G 70 ? A G 78 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 N1 ? A G 70 ? A G 78 ? 1_555 40.7 ? 13 O4 ? A U 51 ? A U 59 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O ? J HOH . ? A HOH 93 ? 1_555 113.3 ? 14 O6 ? A G 52 ? A G 60 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O ? J HOH . ? A HOH 93 ? 1_555 77.4 ? 15 O6 ? A G 70 ? A G 78 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O ? J HOH . ? A HOH 93 ? 1_555 149.6 ? 16 N1 ? A G 70 ? A G 78 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O ? J HOH . ? A HOH 93 ? 1_555 143.5 ? 17 O4 ? A U 51 ? A U 59 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O3 ? I BFT . ? A BFT 95 ? 1_555 118.4 ? 18 O6 ? A G 52 ? A G 60 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O3 ? I BFT . ? A BFT 95 ? 1_555 154.5 ? 19 O6 ? A G 70 ? A G 78 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O3 ? I BFT . ? A BFT 95 ? 1_555 105.7 ? 20 N1 ? A G 70 ? A G 78 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O3 ? I BFT . ? A BFT 95 ? 1_555 66.9 ? 21 O ? J HOH . ? A HOH 93 ? 1_555 CA ? B CA . ? A CA 96 ? 1_555 O3 ? I BFT . ? A BFT 95 ? 1_555 81.1 ? 22 N2 ? A G 64 ? A G 72 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 N4 ? A C 69 ? A C 77 ? 1_555 73.5 ? 23 N2 ? A G 64 ? A G 72 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 O ? J HOH . ? A HOH 92 ? 1_555 158.0 ? 24 N4 ? A C 69 ? A C 77 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 O ? J HOH . ? A HOH 92 ? 1_555 85.4 ? 25 N2 ? A G 64 ? A G 72 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 O1 ? I BFT . ? A BFT 95 ? 1_555 49.9 ? 26 N4 ? A C 69 ? A C 77 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 O1 ? I BFT . ? A BFT 95 ? 1_555 77.0 ? 27 O ? J HOH . ? A HOH 92 ? 1_555 CA ? C CA . ? A CA 97 ? 1_555 O1 ? I BFT . ? A BFT 95 ? 1_555 131.8 ? 28 OP1 ? A A 72 ? A A 80 ? 1_555 CA ? D CA . ? A CA 98 ? 1_555 OP2 ? A G 73 ? A G 81 ? 1_555 81.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 96 ? 5 'BINDING SITE FOR RESIDUE CA A 96' AC2 Software A CA 97 ? 4 'BINDING SITE FOR RESIDUE CA A 97' AC3 Software A CA 98 ? 2 'BINDING SITE FOR RESIDUE CA A 98' AC4 Software A CA 99 ? 1 'BINDING SITE FOR RESIDUE CA A 99' AC5 Software A CA 100 ? 2 'BINDING SITE FOR RESIDUE CA A 100' AC6 Software A CA 101 ? 3 'BINDING SITE FOR RESIDUE CA A 101' AC7 Software A CA 102 ? 1 'BINDING SITE FOR RESIDUE CA A 102' AC8 Software A BFT 95 ? 12 'BINDING SITE FOR RESIDUE BFT A 95' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 51 ? U A 59 . ? 1_555 ? 2 AC1 5 G A 52 ? G A 60 . ? 1_555 ? 3 AC1 5 G A 70 ? G A 78 . ? 1_555 ? 4 AC1 5 HOH J . ? HOH A 93 . ? 1_555 ? 5 AC1 5 BFT I . ? BFT A 95 . ? 1_555 ? 6 AC2 4 G A 64 ? G A 72 . ? 1_555 ? 7 AC2 4 G A 68 ? G A 76 . ? 1_555 ? 8 AC2 4 C A 69 ? C A 77 . ? 1_555 ? 9 AC2 4 BFT I . ? BFT A 95 . ? 1_555 ? 10 AC3 2 A A 72 ? A A 80 . ? 1_555 ? 11 AC3 2 G A 73 ? G A 81 . ? 1_555 ? 12 AC4 1 G A 32 ? G A 40 . ? 1_555 ? 13 AC5 2 U A 12 ? U A 20 . ? 1_555 ? 14 AC5 2 A A 36 ? A A 44 . ? 1_555 ? 15 AC6 3 A A 26 ? A A 34 . ? 1_555 ? 16 AC6 3 A A 27 ? A A 35 . ? 1_555 ? 17 AC6 3 G A 28 ? G A 36 . ? 1_555 ? 18 AC7 1 C A 47 ? C A 55 . ? 1_555 ? 19 AC8 12 G A 11 ? G A 19 . ? 1_555 ? 20 AC8 12 U A 12 ? U A 20 . ? 1_555 ? 21 AC8 12 G A 32 ? G A 40 . ? 1_555 ? 22 AC8 12 G A 34 ? G A 42 . ? 1_555 ? 23 AC8 12 A A 35 ? A A 43 . ? 1_555 ? 24 AC8 12 C A 50 ? C A 58 . ? 1_555 ? 25 AC8 12 G A 64 ? G A 72 . ? 1_555 ? 26 AC8 12 C A 65 ? C A 73 . ? 1_555 ? 27 AC8 12 C A 69 ? C A 77 . ? 1_555 ? 28 AC8 12 G A 70 ? G A 78 . ? 1_555 ? 29 AC8 12 CA B . ? CA A 96 . ? 1_555 ? 30 AC8 12 CA C . ? CA A 97 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 27 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 27 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_655 _pdbx_validate_symm_contact.dist 1.62 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A U 20 ? ? "C3'" A U 20 ? ? "O3'" A U 20 ? ? 126.10 113.70 12.40 1.60 N 2 1 "C4'" A U 20 ? ? "C3'" A U 20 ? ? "C2'" A U 20 ? ? 109.22 102.60 6.62 1.00 N 3 1 "C2'" A A 44 ? ? "C3'" A A 44 ? ? "O3'" A A 44 ? ? 123.93 113.70 10.23 1.60 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? A U 20 ? PLANAR . 2 1 C5 ? A BFT 95 ? PLANAR . 3 1 C4 ? A BFT 95 ? PLANAR . # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 40 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.049 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BFT CM2 C N N 38 BFT N3 N N N 39 BFT C2 C N N 40 BFT S1 S N N 41 BFT C5 C N R 42 BFT C4 C N S 43 BFT CM4 C N N 44 BFT C6 C N N 45 BFT C7 C N N 46 BFT O7 O N N 47 BFT N1A N Y N 48 BFT C2A C Y N 49 BFT N3A N Y N 50 BFT C4A C Y N 51 BFT N4A N N N 52 BFT C5A C Y N 53 BFT C6A C Y N 54 BFT C7A C N N 55 BFT P1 P N N 56 BFT O1 O N N 57 BFT O2 O N N 58 BFT O3 O N N 59 BFT O5 O N N 60 BFT CB1 C N N 61 BFT OB1 O N N 62 BFT CB2 C Y N 63 BFT CB3 C Y N 64 BFT CB4 C Y N 65 BFT CB5 C Y N 66 BFT CB6 C Y N 67 BFT CB7 C Y N 68 BFT HM21 H N N 69 BFT HM22 H N N 70 BFT HM23 H N N 71 BFT H2 H N N 72 BFT H5 H N N 73 BFT H4 H N N 74 BFT HM41 H N N 75 BFT HM42 H N N 76 BFT HM43 H N N 77 BFT H61 H N N 78 BFT H62 H N N 79 BFT H71 H N N 80 BFT H72 H N N 81 BFT H4A1 H N N 82 BFT H4A2 H N N 83 BFT H6A H N N 84 BFT H7A1 H N N 85 BFT H7A2 H N N 86 BFT HO2 H N N 87 BFT HO3 H N N 88 BFT HB3 H N N 89 BFT HB4 H N N 90 BFT HB5 H N N 91 BFT HB6 H N N 92 BFT HB7 H N N 93 C OP3 O N N 94 C P P N N 95 C OP1 O N N 96 C OP2 O N N 97 C "O5'" O N N 98 C "C5'" C N N 99 C "C4'" C N R 100 C "O4'" O N N 101 C "C3'" C N S 102 C "O3'" O N N 103 C "C2'" C N R 104 C "O2'" O N N 105 C "C1'" C N R 106 C N1 N N N 107 C C2 C N N 108 C O2 O N N 109 C N3 N N N 110 C C4 C N N 111 C N4 N N N 112 C C5 C N N 113 C C6 C N N 114 C HOP3 H N N 115 C HOP2 H N N 116 C "H5'" H N N 117 C "H5''" H N N 118 C "H4'" H N N 119 C "H3'" H N N 120 C "HO3'" H N N 121 C "H2'" H N N 122 C "HO2'" H N N 123 C "H1'" H N N 124 C H41 H N N 125 C H42 H N N 126 C H5 H N N 127 C H6 H N N 128 CA CA CA N N 129 G OP3 O N N 130 G P P N N 131 G OP1 O N N 132 G OP2 O N N 133 G "O5'" O N N 134 G "C5'" C N N 135 G "C4'" C N R 136 G "O4'" O N N 137 G "C3'" C N S 138 G "O3'" O N N 139 G "C2'" C N R 140 G "O2'" O N N 141 G "C1'" C N R 142 G N9 N Y N 143 G C8 C Y N 144 G N7 N Y N 145 G C5 C Y N 146 G C6 C N N 147 G O6 O N N 148 G N1 N N N 149 G C2 C N N 150 G N2 N N N 151 G N3 N N N 152 G C4 C Y N 153 G HOP3 H N N 154 G HOP2 H N N 155 G "H5'" H N N 156 G "H5''" H N N 157 G "H4'" H N N 158 G "H3'" H N N 159 G "HO3'" H N N 160 G "H2'" H N N 161 G "HO2'" H N N 162 G "H1'" H N N 163 G H8 H N N 164 G H1 H N N 165 G H21 H N N 166 G H22 H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 U OP3 O N N 171 U P P N N 172 U OP1 O N N 173 U OP2 O N N 174 U "O5'" O N N 175 U "C5'" C N N 176 U "C4'" C N R 177 U "O4'" O N N 178 U "C3'" C N S 179 U "O3'" O N N 180 U "C2'" C N R 181 U "O2'" O N N 182 U "C1'" C N R 183 U N1 N N N 184 U C2 C N N 185 U O2 O N N 186 U N3 N N N 187 U C4 C N N 188 U O4 O N N 189 U C5 C N N 190 U C6 C N N 191 U HOP3 H N N 192 U HOP2 H N N 193 U "H5'" H N N 194 U "H5''" H N N 195 U "H4'" H N N 196 U "H3'" H N N 197 U "HO3'" H N N 198 U "H2'" H N N 199 U "HO2'" H N N 200 U "H1'" H N N 201 U H3 H N N 202 U H5 H N N 203 U H6 H N N 204 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 BFT CM2 C2A sing N N 40 BFT CM2 HM21 sing N N 41 BFT CM2 HM22 sing N N 42 BFT CM2 HM23 sing N N 43 BFT N3 C2 sing N N 44 BFT N3 C4 sing N N 45 BFT N3 C7A sing N N 46 BFT C2 O5 doub N N 47 BFT C2 H2 sing N N 48 BFT S1 C5 sing N N 49 BFT S1 CB1 sing N N 50 BFT C5 C4 sing N N 51 BFT C5 C6 sing N N 52 BFT C5 H5 sing N N 53 BFT C4 CM4 sing N N 54 BFT C4 H4 sing N N 55 BFT CM4 HM41 sing N N 56 BFT CM4 HM42 sing N N 57 BFT CM4 HM43 sing N N 58 BFT C6 C7 sing N N 59 BFT C6 H61 sing N N 60 BFT C6 H62 sing N N 61 BFT C7 O7 sing N N 62 BFT C7 H71 sing N N 63 BFT C7 H72 sing N N 64 BFT O7 P1 sing N N 65 BFT N1A C2A doub Y N 66 BFT N1A C6A sing Y N 67 BFT C2A N3A sing Y N 68 BFT N3A C4A doub Y N 69 BFT C4A N4A sing N N 70 BFT C4A C5A sing Y N 71 BFT N4A H4A1 sing N N 72 BFT N4A H4A2 sing N N 73 BFT C5A C6A doub Y N 74 BFT C5A C7A sing N N 75 BFT C6A H6A sing N N 76 BFT C7A H7A1 sing N N 77 BFT C7A H7A2 sing N N 78 BFT P1 O1 doub N N 79 BFT P1 O2 sing N N 80 BFT P1 O3 sing N N 81 BFT O2 HO2 sing N N 82 BFT O3 HO3 sing N N 83 BFT CB1 OB1 doub N N 84 BFT CB1 CB2 sing N N 85 BFT CB2 CB3 sing Y N 86 BFT CB2 CB7 doub Y N 87 BFT CB3 CB4 doub Y N 88 BFT CB3 HB3 sing N N 89 BFT CB4 CB5 sing Y N 90 BFT CB4 HB4 sing N N 91 BFT CB5 CB6 doub Y N 92 BFT CB5 HB5 sing N N 93 BFT CB6 CB7 sing Y N 94 BFT CB6 HB6 sing N N 95 BFT CB7 HB7 sing N N 96 C OP3 P sing N N 97 C OP3 HOP3 sing N N 98 C P OP1 doub N N 99 C P OP2 sing N N 100 C P "O5'" sing N N 101 C OP2 HOP2 sing N N 102 C "O5'" "C5'" sing N N 103 C "C5'" "C4'" sing N N 104 C "C5'" "H5'" sing N N 105 C "C5'" "H5''" sing N N 106 C "C4'" "O4'" sing N N 107 C "C4'" "C3'" sing N N 108 C "C4'" "H4'" sing N N 109 C "O4'" "C1'" sing N N 110 C "C3'" "O3'" sing N N 111 C "C3'" "C2'" sing N N 112 C "C3'" "H3'" sing N N 113 C "O3'" "HO3'" sing N N 114 C "C2'" "O2'" sing N N 115 C "C2'" "C1'" sing N N 116 C "C2'" "H2'" sing N N 117 C "O2'" "HO2'" sing N N 118 C "C1'" N1 sing N N 119 C "C1'" "H1'" sing N N 120 C N1 C2 sing N N 121 C N1 C6 sing N N 122 C C2 O2 doub N N 123 C C2 N3 sing N N 124 C N3 C4 doub N N 125 C C4 N4 sing N N 126 C C4 C5 sing N N 127 C N4 H41 sing N N 128 C N4 H42 sing N N 129 C C5 C6 doub N N 130 C C5 H5 sing N N 131 C C6 H6 sing N N 132 G OP3 P sing N N 133 G OP3 HOP3 sing N N 134 G P OP1 doub N N 135 G P OP2 sing N N 136 G P "O5'" sing N N 137 G OP2 HOP2 sing N N 138 G "O5'" "C5'" sing N N 139 G "C5'" "C4'" sing N N 140 G "C5'" "H5'" sing N N 141 G "C5'" "H5''" sing N N 142 G "C4'" "O4'" sing N N 143 G "C4'" "C3'" sing N N 144 G "C4'" "H4'" sing N N 145 G "O4'" "C1'" sing N N 146 G "C3'" "O3'" sing N N 147 G "C3'" "C2'" sing N N 148 G "C3'" "H3'" sing N N 149 G "O3'" "HO3'" sing N N 150 G "C2'" "O2'" sing N N 151 G "C2'" "C1'" sing N N 152 G "C2'" "H2'" sing N N 153 G "O2'" "HO2'" sing N N 154 G "C1'" N9 sing N N 155 G "C1'" "H1'" sing N N 156 G N9 C8 sing Y N 157 G N9 C4 sing Y N 158 G C8 N7 doub Y N 159 G C8 H8 sing N N 160 G N7 C5 sing Y N 161 G C5 C6 sing N N 162 G C5 C4 doub Y N 163 G C6 O6 doub N N 164 G C6 N1 sing N N 165 G N1 C2 sing N N 166 G N1 H1 sing N N 167 G C2 N2 sing N N 168 G C2 N3 doub N N 169 G N2 H21 sing N N 170 G N2 H22 sing N N 171 G N3 C4 sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 U OP3 P sing N N 175 U OP3 HOP3 sing N N 176 U P OP1 doub N N 177 U P OP2 sing N N 178 U P "O5'" sing N N 179 U OP2 HOP2 sing N N 180 U "O5'" "C5'" sing N N 181 U "C5'" "C4'" sing N N 182 U "C5'" "H5'" sing N N 183 U "C5'" "H5''" sing N N 184 U "C4'" "O4'" sing N N 185 U "C4'" "C3'" sing N N 186 U "C4'" "H4'" sing N N 187 U "O4'" "C1'" sing N N 188 U "C3'" "O3'" sing N N 189 U "C3'" "C2'" sing N N 190 U "C3'" "H3'" sing N N 191 U "O3'" "HO3'" sing N N 192 U "C2'" "O2'" sing N N 193 U "C2'" "C1'" sing N N 194 U "C2'" "H2'" sing N N 195 U "O2'" "HO2'" sing N N 196 U "C1'" N1 sing N N 197 U "C1'" "H1'" sing N N 198 U N1 C2 sing N N 199 U N1 C6 sing N N 200 U C2 O2 doub N N 201 U C2 N3 sing N N 202 U N3 C4 sing N N 203 U N3 H3 sing N N 204 U C4 O4 doub N N 205 U C4 C5 sing N N 206 U C5 C6 doub N N 207 U C5 H5 sing N N 208 U C6 H6 sing N N 209 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOO 'double helix' 2HOO 'a-form double helix' 2HOO 'hairpin loop' 2HOO 'bulge loop' 2HOO 'mismatched base pair' 2HOO 'internal loop' 2HOO 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 0.432 -0.115 0.473 7.446 -8.992 -1.803 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 0.320 -0.003 0.497 0.442 -3.416 5.446 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 0.339 -0.142 0.395 2.105 -10.363 2.554 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 -0.399 -0.196 0.593 2.066 -17.529 -0.723 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.408 0.408 1.043 -10.710 -12.297 11.515 5 A_C13:G86_A A 13 ? A 86 ? ? 1 1 A U 6 1_555 A A 77 1_555 -0.299 0.241 1.135 -17.957 -3.455 5.921 6 A_U14:A85_A A 14 ? A 85 ? ? ? 1 A C 7 1_555 A G 43 1_555 -0.162 -0.157 0.139 -0.030 -12.955 6.084 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.312 -0.280 -0.078 -3.638 -15.127 4.564 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 0.021 -0.107 0.245 -10.044 -17.531 4.579 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.494 -0.104 0.550 -3.991 -11.406 -0.815 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 0.606 1.527 -0.160 0.440 -9.712 -20.661 11 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 -0.143 -0.243 0.050 13.405 13.817 14.922 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -3.299 -0.774 0.236 6.951 -5.360 -2.019 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -0.653 -0.314 -0.225 -0.858 -14.812 -1.797 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.302 0.030 0.366 3.365 -9.272 5.052 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.795 -0.047 1.310 -26.821 5.402 -9.440 16 A_C38:G21_A A 38 ? A 21 ? ? ? 1 A U 31 1_555 A A 35 1_555 3.544 -1.507 0.494 5.626 7.249 -96.638 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 6.472 -5.307 0.241 -22.854 16.584 174.632 18 A_A53:A84_A A 53 ? A 84 ? 2 8 1 A A 48 1_555 A G 75 1_555 -6.933 -4.515 0.157 11.266 -10.329 -8.245 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 -0.073 -0.169 -0.108 15.083 -14.210 -0.013 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 -0.331 -0.353 -0.243 6.354 -9.057 -1.922 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 0.920 -0.126 0.918 -7.105 3.643 1.728 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.603 3.666 0.021 -19.401 12.928 -90.134 23 A_G60:G78_A A 60 ? A 78 ? 6 ? 1 A A 53 1_555 A C 69 1_555 -1.260 3.240 0.243 9.332 -6.657 110.394 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 -1.946 0.057 -0.235 29.529 -3.580 -2.386 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 0.433 0.312 0.201 1.878 -20.687 3.326 26 A_U64:A75_A A 64 ? A 75 ? ? ? 1 A G 57 1_555 A C 66 1_555 -0.322 -0.355 1.100 1.773 5.240 1.570 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 0.580 -0.168 -0.020 10.134 9.722 3.101 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.354 -1.130 3.554 -0.931 1.485 32.759 -2.276 -0.800 3.490 2.630 1.650 32.805 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 -0.434 -1.736 2.823 2.949 7.517 31.206 -4.197 1.201 2.304 13.689 -5.369 32.209 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 0.045 -1.591 2.950 -2.900 6.896 29.286 -4.238 -0.584 2.502 13.366 5.620 30.207 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 0.280 -1.261 3.430 -2.657 4.006 39.476 -2.332 -0.728 3.267 5.904 3.915 39.756 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 -0.142 -1.377 3.288 1.318 -3.380 29.210 -1.967 0.569 3.412 -6.670 -2.601 29.430 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.352 -0.912 2.758 10.279 1.739 40.744 -1.433 -0.939 2.960 2.450 -14.479 42.001 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.983 -1.626 3.189 0.669 10.756 28.899 -4.935 -1.734 2.461 20.666 -1.286 30.803 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.569 -1.487 3.266 -1.941 4.935 37.575 -2.903 0.634 3.078 7.614 2.995 37.934 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.237 -1.469 2.982 -1.149 6.102 28.616 -4.053 0.254 2.626 12.164 2.290 29.268 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.323 -0.682 3.164 7.976 5.017 40.658 -1.444 2.632 2.768 7.105 -11.296 41.690 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.520 0.303 3.215 -2.234 10.457 3.769 -14.095 -5.972 1.248 69.081 14.758 11.336 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 -0.119 -1.790 3.801 -6.010 4.186 37.776 -3.310 -0.668 3.567 6.392 9.177 38.454 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.281 -1.966 2.991 -10.538 2.278 31.901 -3.737 -1.080 2.798 4.005 18.525 33.628 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.584 -2.104 4.011 -3.734 12.347 44.530 -3.890 0.377 3.380 15.902 4.810 46.269 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.298 -0.915 2.415 12.756 -0.167 64.050 -0.845 3.407 1.803 -0.156 -11.903 65.175 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.187 -2.249 0.858 148.422 -81.646 -60.601 1.407 -0.591 1.152 42.086 76.508 -170.848 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.076 -0.794 3.351 -1.296 5.769 67.273 -0.939 -1.019 3.262 5.197 1.167 67.502 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.429 -2.065 3.481 0.292 7.002 30.854 -5.080 0.841 2.948 12.951 -0.541 31.621 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 1.089 -1.249 3.473 -4.425 6.090 46.331 -2.085 -1.743 3.182 7.681 5.581 46.905 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.687 -2.393 2.690 26.982 3.092 92.038 -1.672 -1.381 3.153 2.113 -18.435 95.091 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.981 1.595 -0.228 21.416 -175.202 -63.122 -0.605 1.515 0.922 88.427 10.809 -177.023 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -2.898 -0.809 -1.627 101.888 -134.042 10.100 -1.460 0.656 -1.249 -71.242 -54.152 168.416 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 0.444 -2.137 4.203 -1.260 9.718 40.869 -4.207 -0.778 3.610 13.681 1.773 41.978 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.343 -1.465 2.913 -7.405 8.729 31.372 -3.779 -0.443 2.445 15.511 13.159 33.346 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.624 -2.257 2.949 10.649 -3.267 37.191 -3.017 0.309 3.182 -4.988 -16.255 38.766 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _atom_sites.entry_id 2HOO _atom_sites.fract_transf_matrix[1][1] 0.016287 _atom_sites.fract_transf_matrix[1][2] 0.009403 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018806 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009718 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_