data_2HOS # _entry.id 2HOS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOS pdb_00002hos 10.2210/pdb2hos/pdb NDB PD0840 ? ? RCSB RCSB038588 ? ? WWPDB D_1000038588 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HDD 'Engrailed Homeodomain Q50K mutant bound to identical DNA' unspecified PDB 2HOT . unspecified # _pdbx_database_status.entry_id 2HOS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shokat, K.M.' 1 'Feldman, M.E.' 2 'Simon, M.D.' 3 # _citation.id primary _citation.title 'Structure and properties of a re-engineered homeodomain protein-DNA interface.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 1 _citation.page_first 755 _citation.page_last 760 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17240973 _citation.pdbx_database_id_DOI 10.1021/cb6003756 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simon, M.D.' 1 ? primary 'Feldman, M.E.' 2 ? primary 'Rauh, D.' 3 ? primary 'Maris, A.E.' 4 ? primary 'Wemmer, D.E.' 5 ? primary 'Shokat, K.M.' 6 ? # _cell.entry_id 2HOS _cell.length_a 127.097 _cell.length_b 45.025 _cell.length_c 73.081 _cell.angle_alpha 90.00 _cell.angle_beta 118.41 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOS _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3'" 6389.133 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3'" 6496.224 1 ? ? ? ? 3 polymer man 'Segmentation polarity homeobox protein engrailed' 7516.522 2 ? I45V,I47G,Q50K,K52M 'ENGRAILED HOMEODOMAIN' ? 4 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 5 non-polymer syn 3-METHYL-1,3-OXAZOLIDIN-2-ONE 101.104 1 ? ? ? ? 6 water nat water 18.015 129 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name Homeobox # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DG)(DG) (DA) ; TTTTGCCATGTAATCCCCGGA C ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DC)(DC)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATCCGGGGATTACATGGCAAA D ? 3 'polypeptide(L)' no no GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DC n 1 18 DC n 1 19 DG n 1 20 DG n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DG n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 GLY n 3 2 SER n 3 3 ASP n 3 4 GLU n 3 5 LYS n 3 6 ARG n 3 7 PRO n 3 8 ARG n 3 9 THR n 3 10 ALA n 3 11 PHE n 3 12 SER n 3 13 SER n 3 14 GLU n 3 15 GLN n 3 16 LEU n 3 17 ALA n 3 18 ARG n 3 19 LEU n 3 20 LYS n 3 21 ARG n 3 22 GLU n 3 23 PHE n 3 24 ASN n 3 25 GLU n 3 26 ASN n 3 27 ARG n 3 28 TYR n 3 29 LEU n 3 30 THR n 3 31 GLU n 3 32 ARG n 3 33 ARG n 3 34 ARG n 3 35 GLN n 3 36 GLN n 3 37 LEU n 3 38 SER n 3 39 SER n 3 40 GLU n 3 41 LEU n 3 42 GLY n 3 43 LEU n 3 44 ASN n 3 45 GLU n 3 46 ALA n 3 47 GLN n 3 48 VAL n 3 49 LYS n 3 50 GLY n 3 51 TRP n 3 52 PHE n 3 53 LYS n 3 54 ASN n 3 55 MET n 3 56 ARG n 3 57 ALA n 3 58 LYS n 3 59 ILE n 3 60 LYS n 3 61 LYS n 3 62 SER n 3 63 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene en _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pMal-c2 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMal-EnHDf _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Commercial Solid Phase Synthesis' 2 1 sample ? ? ? ? ? 'Commercial Solid Phase Synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HMEN_DROME P02836 3 453 ? ? 2 PDB 2HOS 2HOS 1 ? ? ? 3 PDB 2HOS 2HOS 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HOS A 3 ? 63 ? P02836 453 ? 513 ? 0 60 2 1 2HOS B 3 ? 63 ? P02836 453 ? 513 ? 0 60 3 2 2HOS C 1 ? 21 ? 2HOS 1 ? 21 ? 1 21 4 3 2HOS D 1 ? 21 ? 2HOS 22 ? 42 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HOS GLY A 1 ? UNP P02836 ? ? 'cloning artifact' -2 1 1 2HOS SER A 2 ? UNP P02836 ? ? 'cloning artifact' -1 2 1 2HOS VAL A 48 ? UNP P02836 ILE 498 'engineered mutation' 45 3 1 2HOS GLY A 50 ? UNP P02836 ILE 500 'engineered mutation' 47 4 1 2HOS LYS A 53 ? UNP P02836 GLN 503 'engineered mutation' 50 5 1 2HOS MET A 55 ? UNP P02836 LYS 505 'engineered mutation' 52 6 2 2HOS GLY B 1 ? UNP P02836 ? ? 'cloning artifact' -2 7 2 2HOS SER B 2 ? UNP P02836 ? ? 'cloning artifact' -1 8 2 2HOS VAL B 48 ? UNP P02836 ILE 498 'engineered mutation' 45 9 2 2HOS GLY B 50 ? UNP P02836 ILE 500 'engineered mutation' 47 10 2 2HOS LYS B 53 ? UNP P02836 GLN 503 'engineered mutation' 50 11 2 2HOS MET B 55 ? UNP P02836 LYS 505 'engineered mutation' 52 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3MO non-polymer . 3-METHYL-1,3-OXAZOLIDIN-2-ONE 3-METHYL-2-OXAZOLIDINONE 'C4 H7 N O2' 101.104 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HOS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 61.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;Well: 20% PEG400, 100mM NH4OAc Drop: 0.5mM DNA Protein Complex, 0.55M NH4OAc, 3.5mM bis-Tris-Propane, 10% PEG-400, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 PEG400 ? ? ? 1 2 1 NH4OAc ? ? ? 1 3 1 H2O ? ? ? 1 4 2 NH4OAc ? ? ? 1 5 2 bis-Tris-Propane ? ? ? 1 6 2 PEG400 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-07-25 _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11588 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11588 # _reflns.entry_id 2HOS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 28750 _reflns.number_all ? _reflns.percent_possible_obs 84.300 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.700 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.86 33.70 0.391 ? ? 2.30 ? ? ? ? ? ? 1 1 1.86 1.94 52.70 0.409 ? ? 2.80 ? ? ? ? ? ? 2 1 1.94 2.03 73.20 0.349 ? ? 3.10 ? ? ? ? ? ? 3 1 2.03 2.13 87.40 0.245 ? ? 3.50 ? ? ? ? ? ? 4 1 2.13 2.27 96.30 0.184 ? ? 3.70 ? ? ? ? ? ? 5 1 2.27 2.44 99.80 0.143 ? ? 4.00 ? ? ? ? ? ? 6 1 2.44 2.69 100.00 0.089 ? ? 4.10 ? ? ? ? ? ? 7 1 2.69 3.08 100.00 0.048 ? ? 4.10 ? ? ? ? ? ? 8 1 3.08 3.88 99.40 0.026 ? ? 4.00 ? ? ? ? ? ? 9 1 3.88 50.00 99.70 0.023 ? ? 3.90 ? ? ? ? ? ? 10 1 # _refine.entry_id 2HOS _refine.ls_number_reflns_obs 23285 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.48 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 86.29 _refine.ls_R_factor_obs 0.22535 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22308 _refine.ls_R_factor_R_free 0.25693 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.8 _refine.ls_number_reflns_R_free 1710 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .950 _refine.correlation_coeff_Fo_to_Fc_free .931 _refine.B_iso_mean 42.351 _refine.aniso_B[1][1] -.96 _refine.aniso_B[2][2] .40 _refine.aniso_B[3][3] .55 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] -.01 _refine.aniso_B[2][3] .00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2HDD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .164 _refine.pdbx_overall_ESU_R_Free .154 _refine.overall_SU_ML .124 _refine.overall_SU_B 8.198 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 950 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1965 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 32.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .010 .021 ? 1977 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.702 2.506 ? 2829 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.613 5.000 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.522 22.203 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.034 15.000 ? 205 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.710 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr .085 .200 ? 299 'X-RAY DIFFRACTION' ? r_gen_planes_refined .006 .020 ? 1217 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .185 .200 ? 703 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .298 .200 ? 1224 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .156 .200 ? 149 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .207 .200 ? 61 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .091 .200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it .690 1.500 ? 598 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.132 2.000 ? 923 'X-RAY DIFFRACTION' ? r_scbond_it 1.726 3.000 ? 1853 'X-RAY DIFFRACTION' ? r_scangle_it 2.667 4.500 ? 1901 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 966 _refine_ls_shell.R_factor_R_work 0.359 _refine_ls_shell.percent_reflns_obs 49.53 _refine_ls_shell.R_factor_R_free 0.419 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HOS _struct.title 'Phage-Selected Homeodomain Bound to Unmodified DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOS _struct_keywords.pdbx_keywords Transcription/DNA _struct_keywords.text 'Homeodomain, Phage Display, Transcription-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 4 ? I N N 4 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 12 ? ASN C 26 ? SER A 9 ASN A 23 1 ? 15 HELX_P HELX_P2 2 THR C 30 ? GLY C 42 ? THR A 27 GLY A 39 1 ? 13 HELX_P HELX_P3 3 ASN C 44 ? THR C 63 ? ASN A 41 THR A 60 1 ? 20 HELX_P HELX_P4 4 SER D 12 ? ASN D 26 ? SER B 9 ASN B 23 1 ? 15 HELX_P HELX_P5 5 THR D 30 ? GLY D 42 ? THR B 27 GLY B 39 1 ? 13 HELX_P HELX_P6 6 ASN D 44 ? SER D 62 ? ASN B 41 SER B 59 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 3 N3 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 3 O2 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 3 N4 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 3MO 301 ? 5 'BINDING SITE FOR RESIDUE 3MO B 301' AC2 Software A GOL 201 ? 7 'BINDING SITE FOR RESIDUE GOL A 201' AC3 Software B GOL 202 ? 4 'BINDING SITE FOR RESIDUE GOL B 202' AC4 Software B GOL 203 ? 5 'BINDING SITE FOR RESIDUE GOL B 203' AC5 Software C GOL 204 ? 4 'BINDING SITE FOR RESIDUE GOL C 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER D 12 ? SER B 9 . ? 4_557 ? 2 AC1 5 GLU D 14 ? GLU B 11 . ? 4_557 ? 3 AC1 5 TYR D 28 ? TYR B 25 . ? 1_555 ? 4 AC1 5 LEU D 41 ? LEU B 38 . ? 4_557 ? 5 AC1 5 GOL E . ? GOL C 204 . ? 1_555 ? 6 AC2 7 ASN C 54 ? ASN A 51 . ? 1_555 ? 7 AC2 7 MET C 55 ? MET A 52 . ? 1_555 ? 8 AC2 7 LYS C 58 ? LYS A 55 . ? 1_555 ? 9 AC2 7 HOH L . ? HOH A 206 . ? 1_555 ? 10 AC2 7 HOH L . ? HOH A 209 . ? 1_555 ? 11 AC2 7 DT A 11 ? DT C 11 . ? 1_555 ? 12 AC2 7 DA A 12 ? DA C 12 . ? 1_555 ? 13 AC3 4 PHE D 23 ? PHE B 20 . ? 4_547 ? 14 AC3 4 ASN D 24 ? ASN B 21 . ? 4_547 ? 15 AC3 4 ARG D 27 ? ARG B 24 . ? 4_547 ? 16 AC3 4 HOH M . ? HOH B 308 . ? 1_555 ? 17 AC4 5 ARG D 27 ? ARG B 24 . ? 1_555 ? 18 AC4 5 TYR D 28 ? TYR B 25 . ? 1_555 ? 19 AC4 5 GLU D 40 ? GLU B 37 . ? 4_557 ? 20 AC4 5 ARG D 56 ? ARG B 53 . ? 1_555 ? 21 AC4 5 HOH J . ? HOH C 210 . ? 1_555 ? 22 AC5 4 3MO G . ? 3MO B 301 . ? 1_555 ? 23 AC5 4 DC A 18 ? DC C 18 . ? 1_555 ? 24 AC5 4 DG A 19 ? DG C 19 . ? 1_555 ? 25 AC5 4 HOH J . ? HOH C 227 . ? 1_555 ? # _atom_sites.entry_id 2HOS _atom_sites.fract_transf_matrix[1][1] 0.007868 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004256 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022210 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015557 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DT 3 3 3 DT T C . n A 1 4 DT 4 4 4 DT T C . n A 1 5 DG 5 5 5 DG G C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DC 7 7 7 DC C C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DT 9 9 9 DT T C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DT 11 11 11 DT T C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DC 15 15 15 DC C C . n A 1 16 DC 16 16 16 DC C C . n A 1 17 DC 17 17 17 DC C C . n A 1 18 DC 18 18 18 DC C C . n A 1 19 DG 19 19 19 DG G C . n A 1 20 DG 20 20 20 DG G C . n A 1 21 DA 21 21 21 DA A C . n B 2 1 DA 1 22 22 DA A D . n B 2 2 DT 2 23 23 DT T D . n B 2 3 DC 3 24 24 DC C D . n B 2 4 DC 4 25 25 DC C D . n B 2 5 DG 5 26 26 DG G D . n B 2 6 DG 6 27 27 DG G D . n B 2 7 DG 7 28 28 DG G D . n B 2 8 DG 8 29 29 DG G D . n B 2 9 DA 9 30 30 DA A D . n B 2 10 DT 10 31 31 DT T D . n B 2 11 DT 11 32 32 DT T D . n B 2 12 DA 12 33 33 DA A D . n B 2 13 DC 13 34 34 DC C D . n B 2 14 DA 14 35 35 DA A D . n B 2 15 DT 15 36 36 DT T D . n B 2 16 DG 16 37 37 DG G D . n B 2 17 DG 17 38 38 DG G D . n B 2 18 DC 18 39 39 DC C D . n B 2 19 DA 19 40 40 DA A D . n B 2 20 DA 20 41 41 DA A D . n B 2 21 DA 21 42 42 DA A D . n C 3 1 GLY 1 -2 ? ? ? A . n C 3 2 SER 2 -1 ? ? ? A . n C 3 3 ASP 3 0 ? ? ? A . n C 3 4 GLU 4 1 ? ? ? A . n C 3 5 LYS 5 2 ? ? ? A . n C 3 6 ARG 6 3 ? ? ? A . n C 3 7 PRO 7 4 ? ? ? A . n C 3 8 ARG 8 5 5 ARG ARG A . n C 3 9 THR 9 6 6 THR THR A . n C 3 10 ALA 10 7 7 ALA ALA A . n C 3 11 PHE 11 8 8 PHE PHE A . n C 3 12 SER 12 9 9 SER SER A . n C 3 13 SER 13 10 10 SER SER A . n C 3 14 GLU 14 11 11 GLU GLU A . n C 3 15 GLN 15 12 12 GLN GLN A . n C 3 16 LEU 16 13 13 LEU LEU A . n C 3 17 ALA 17 14 14 ALA ALA A . n C 3 18 ARG 18 15 15 ARG ARG A . n C 3 19 LEU 19 16 16 LEU LEU A . n C 3 20 LYS 20 17 17 LYS LYS A . n C 3 21 ARG 21 18 18 ARG ARG A . n C 3 22 GLU 22 19 19 GLU GLU A . n C 3 23 PHE 23 20 20 PHE PHE A . n C 3 24 ASN 24 21 21 ASN ASN A . n C 3 25 GLU 25 22 22 GLU GLU A . n C 3 26 ASN 26 23 23 ASN ASN A . n C 3 27 ARG 27 24 24 ARG ARG A . n C 3 28 TYR 28 25 25 TYR TYR A . n C 3 29 LEU 29 26 26 LEU LEU A . n C 3 30 THR 30 27 27 THR THR A . n C 3 31 GLU 31 28 28 GLU GLU A . n C 3 32 ARG 32 29 29 ARG ARG A . n C 3 33 ARG 33 30 30 ARG ARG A . n C 3 34 ARG 34 31 31 ARG ARG A . n C 3 35 GLN 35 32 32 GLN GLN A . n C 3 36 GLN 36 33 33 GLN GLN A . n C 3 37 LEU 37 34 34 LEU LEU A . n C 3 38 SER 38 35 35 SER SER A . n C 3 39 SER 39 36 36 SER SER A . n C 3 40 GLU 40 37 37 GLU GLU A . n C 3 41 LEU 41 38 38 LEU LEU A . n C 3 42 GLY 42 39 39 GLY GLY A . n C 3 43 LEU 43 40 40 LEU LEU A . n C 3 44 ASN 44 41 41 ASN ASN A . n C 3 45 GLU 45 42 42 GLU GLU A . n C 3 46 ALA 46 43 43 ALA ALA A . n C 3 47 GLN 47 44 44 GLN GLN A . n C 3 48 VAL 48 45 45 VAL VAL A . n C 3 49 LYS 49 46 46 LYS LYS A . n C 3 50 GLY 50 47 47 GLY GLY A . n C 3 51 TRP 51 48 48 TRP TRP A . n C 3 52 PHE 52 49 49 PHE PHE A . n C 3 53 LYS 53 50 50 LYS LYS A . n C 3 54 ASN 54 51 51 ASN ASN A . n C 3 55 MET 55 52 52 MET MET A . n C 3 56 ARG 56 53 53 ARG ARG A . n C 3 57 ALA 57 54 54 ALA ALA A . n C 3 58 LYS 58 55 55 LYS LYS A . n C 3 59 ILE 59 56 56 ILE ILE A . n C 3 60 LYS 60 57 57 LYS LYS A . n C 3 61 LYS 61 58 58 LYS LYS A . n C 3 62 SER 62 59 59 SER SER A . n C 3 63 THR 63 60 60 THR THR A . n D 3 1 GLY 1 -2 ? ? ? B . n D 3 2 SER 2 -1 ? ? ? B . n D 3 3 ASP 3 0 ? ? ? B . n D 3 4 GLU 4 1 ? ? ? B . n D 3 5 LYS 5 2 2 LYS LYS B . n D 3 6 ARG 6 3 3 ARG ARG B . n D 3 7 PRO 7 4 4 PRO PRO B . n D 3 8 ARG 8 5 5 ARG ARG B . n D 3 9 THR 9 6 6 THR THR B . n D 3 10 ALA 10 7 7 ALA ALA B . n D 3 11 PHE 11 8 8 PHE PHE B . n D 3 12 SER 12 9 9 SER SER B . n D 3 13 SER 13 10 10 SER SER B . n D 3 14 GLU 14 11 11 GLU GLU B . n D 3 15 GLN 15 12 12 GLN GLN B . n D 3 16 LEU 16 13 13 LEU LEU B . n D 3 17 ALA 17 14 14 ALA ALA B . n D 3 18 ARG 18 15 15 ARG ARG B . n D 3 19 LEU 19 16 16 LEU LEU B . n D 3 20 LYS 20 17 17 LYS LYS B . n D 3 21 ARG 21 18 18 ARG ARG B . n D 3 22 GLU 22 19 19 GLU GLU B . n D 3 23 PHE 23 20 20 PHE PHE B . n D 3 24 ASN 24 21 21 ASN ASN B . n D 3 25 GLU 25 22 22 GLU GLU B . n D 3 26 ASN 26 23 23 ASN ASN B . n D 3 27 ARG 27 24 24 ARG ARG B . n D 3 28 TYR 28 25 25 TYR TYR B . n D 3 29 LEU 29 26 26 LEU LEU B . n D 3 30 THR 30 27 27 THR THR B . n D 3 31 GLU 31 28 28 GLU GLU B . n D 3 32 ARG 32 29 29 ARG ARG B . n D 3 33 ARG 33 30 30 ARG ARG B . n D 3 34 ARG 34 31 31 ARG ARG B . n D 3 35 GLN 35 32 32 GLN GLN B . n D 3 36 GLN 36 33 33 GLN GLN B . n D 3 37 LEU 37 34 34 LEU LEU B . n D 3 38 SER 38 35 35 SER SER B . n D 3 39 SER 39 36 36 SER SER B . n D 3 40 GLU 40 37 37 GLU GLU B . n D 3 41 LEU 41 38 38 LEU LEU B . n D 3 42 GLY 42 39 39 GLY GLY B . n D 3 43 LEU 43 40 40 LEU LEU B . n D 3 44 ASN 44 41 41 ASN ASN B . n D 3 45 GLU 45 42 42 GLU GLU B . n D 3 46 ALA 46 43 43 ALA ALA B . n D 3 47 GLN 47 44 44 GLN GLN B . n D 3 48 VAL 48 45 45 VAL VAL B . n D 3 49 LYS 49 46 46 LYS LYS B . n D 3 50 GLY 50 47 47 GLY GLY B . n D 3 51 TRP 51 48 48 TRP TRP B . n D 3 52 PHE 52 49 49 PHE PHE B . n D 3 53 LYS 53 50 50 LYS LYS B . n D 3 54 ASN 54 51 51 ASN ASN B . n D 3 55 MET 55 52 52 MET MET B . n D 3 56 ARG 56 53 53 ARG ARG B . n D 3 57 ALA 57 54 54 ALA ALA B . n D 3 58 LYS 58 55 55 LYS LYS B . n D 3 59 ILE 59 56 56 ILE ILE B . n D 3 60 LYS 60 57 57 LYS LYS B . n D 3 61 LYS 61 58 58 LYS LYS B . n D 3 62 SER 62 59 59 SER SER B . n D 3 63 THR 63 60 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL 1 204 204 GOL GOL C . F 4 GOL 1 201 201 GOL GOL A . G 5 3MO 1 301 301 3MO 3MO B . H 4 GOL 1 202 202 GOL GOL B . I 4 GOL 1 203 203 GOL GOL B . J 6 HOH 1 205 1 HOH HOH C . J 6 HOH 2 206 10 HOH HOH C . J 6 HOH 3 207 11 HOH HOH C . J 6 HOH 4 208 16 HOH HOH C . J 6 HOH 5 209 19 HOH HOH C . J 6 HOH 6 210 23 HOH HOH C . J 6 HOH 7 211 33 HOH HOH C . J 6 HOH 8 212 35 HOH HOH C . J 6 HOH 9 213 40 HOH HOH C . J 6 HOH 10 214 41 HOH HOH C . J 6 HOH 11 215 42 HOH HOH C . J 6 HOH 12 216 43 HOH HOH C . J 6 HOH 13 217 48 HOH HOH C . J 6 HOH 14 218 49 HOH HOH C . J 6 HOH 15 219 55 HOH HOH C . J 6 HOH 16 220 62 HOH HOH C . J 6 HOH 17 221 70 HOH HOH C . J 6 HOH 18 222 71 HOH HOH C . J 6 HOH 19 223 72 HOH HOH C . J 6 HOH 20 224 100 HOH HOH C . J 6 HOH 21 225 101 HOH HOH C . J 6 HOH 22 226 108 HOH HOH C . J 6 HOH 23 227 109 HOH HOH C . J 6 HOH 24 228 113 HOH HOH C . J 6 HOH 25 229 123 HOH HOH C . J 6 HOH 26 230 125 HOH HOH C . K 6 HOH 1 43 2 HOH HOH D . K 6 HOH 2 44 3 HOH HOH D . K 6 HOH 3 45 4 HOH HOH D . K 6 HOH 4 46 5 HOH HOH D . K 6 HOH 5 47 6 HOH HOH D . K 6 HOH 6 48 13 HOH HOH D . K 6 HOH 7 49 18 HOH HOH D . K 6 HOH 8 50 20 HOH HOH D . K 6 HOH 9 51 21 HOH HOH D . K 6 HOH 10 52 27 HOH HOH D . K 6 HOH 11 53 29 HOH HOH D . K 6 HOH 12 54 30 HOH HOH D . K 6 HOH 13 55 36 HOH HOH D . K 6 HOH 14 56 47 HOH HOH D . K 6 HOH 15 57 51 HOH HOH D . K 6 HOH 16 58 53 HOH HOH D . K 6 HOH 17 59 56 HOH HOH D . K 6 HOH 18 60 57 HOH HOH D . K 6 HOH 19 61 58 HOH HOH D . K 6 HOH 20 62 59 HOH HOH D . K 6 HOH 21 63 60 HOH HOH D . K 6 HOH 22 64 73 HOH HOH D . K 6 HOH 23 65 77 HOH HOH D . K 6 HOH 24 66 86 HOH HOH D . K 6 HOH 25 67 89 HOH HOH D . K 6 HOH 26 68 94 HOH HOH D . K 6 HOH 27 69 97 HOH HOH D . K 6 HOH 28 70 98 HOH HOH D . K 6 HOH 29 71 104 HOH HOH D . K 6 HOH 30 72 105 HOH HOH D . K 6 HOH 31 73 107 HOH HOH D . K 6 HOH 32 74 111 HOH HOH D . K 6 HOH 33 75 114 HOH HOH D . K 6 HOH 34 76 115 HOH HOH D . K 6 HOH 35 77 126 HOH HOH D . L 6 HOH 1 202 7 HOH HOH A . L 6 HOH 2 203 9 HOH HOH A . L 6 HOH 3 204 15 HOH HOH A . L 6 HOH 4 205 22 HOH HOH A . L 6 HOH 5 206 24 HOH HOH A . L 6 HOH 6 207 26 HOH HOH A . L 6 HOH 7 208 28 HOH HOH A . L 6 HOH 8 209 31 HOH HOH A . L 6 HOH 9 210 38 HOH HOH A . L 6 HOH 10 211 44 HOH HOH A . L 6 HOH 11 212 46 HOH HOH A . L 6 HOH 12 213 52 HOH HOH A . L 6 HOH 13 214 63 HOH HOH A . L 6 HOH 14 215 64 HOH HOH A . L 6 HOH 15 216 67 HOH HOH A . L 6 HOH 16 217 68 HOH HOH A . L 6 HOH 17 218 78 HOH HOH A . L 6 HOH 18 219 79 HOH HOH A . L 6 HOH 19 220 84 HOH HOH A . L 6 HOH 20 221 85 HOH HOH A . L 6 HOH 21 222 87 HOH HOH A . L 6 HOH 22 223 88 HOH HOH A . L 6 HOH 23 224 90 HOH HOH A . L 6 HOH 24 225 93 HOH HOH A . L 6 HOH 25 226 96 HOH HOH A . L 6 HOH 26 227 99 HOH HOH A . L 6 HOH 27 228 112 HOH HOH A . L 6 HOH 28 229 119 HOH HOH A . L 6 HOH 29 230 121 HOH HOH A . L 6 HOH 30 231 122 HOH HOH A . L 6 HOH 31 232 128 HOH HOH A . L 6 HOH 32 233 129 HOH HOH A . M 6 HOH 1 302 8 HOH HOH B . M 6 HOH 2 303 12 HOH HOH B . M 6 HOH 3 304 14 HOH HOH B . M 6 HOH 4 305 17 HOH HOH B . M 6 HOH 5 306 25 HOH HOH B . M 6 HOH 6 307 32 HOH HOH B . M 6 HOH 7 308 34 HOH HOH B . M 6 HOH 8 309 37 HOH HOH B . M 6 HOH 9 310 39 HOH HOH B . M 6 HOH 10 311 45 HOH HOH B . M 6 HOH 11 312 50 HOH HOH B . M 6 HOH 12 313 54 HOH HOH B . M 6 HOH 13 314 61 HOH HOH B . M 6 HOH 14 315 65 HOH HOH B . M 6 HOH 15 316 66 HOH HOH B . M 6 HOH 16 317 69 HOH HOH B . M 6 HOH 17 318 74 HOH HOH B . M 6 HOH 18 319 75 HOH HOH B . M 6 HOH 19 320 76 HOH HOH B . M 6 HOH 20 321 80 HOH HOH B . M 6 HOH 21 322 81 HOH HOH B . M 6 HOH 22 323 82 HOH HOH B . M 6 HOH 23 324 83 HOH HOH B . M 6 HOH 24 325 91 HOH HOH B . M 6 HOH 25 326 92 HOH HOH B . M 6 HOH 26 327 95 HOH HOH B . M 6 HOH 27 328 102 HOH HOH B . M 6 HOH 28 329 103 HOH HOH B . M 6 HOH 29 330 106 HOH HOH B . M 6 HOH 30 331 110 HOH HOH B . M 6 HOH 31 332 116 HOH HOH B . M 6 HOH 32 333 117 HOH HOH B . M 6 HOH 33 334 118 HOH HOH B . M 6 HOH 34 335 120 HOH HOH B . M 6 HOH 35 336 124 HOH HOH B . M 6 HOH 36 337 127 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.0160 29.5070 32.7710 .0597 -.2044 -.2127 -.0314 .1222 .0044 2.4584 12.6404 6.3337 -1.0140 -1.2035 1.3568 .0802 .0281 -.0139 -.9454 .0106 -.8471 -.0608 .2179 -.0907 'X-RAY DIFFRACTION' 2 ? refined -3.6340 20.2970 62.2880 -.1067 -.2502 -.2947 -.0134 .0047 -.0152 4.3849 11.4431 3.3347 -.1014 -1.9005 -1.4333 -.0930 -.0582 -.0542 .2189 .0418 .2225 .0915 .0000 .0511 'X-RAY DIFFRACTION' 3 ? refined 25.1870 28.4350 47.8570 .0264 .2235 .1370 -.1430 -.0708 .0375 11.5285 .4576 .5300 2.1346 -1.3477 -.0972 -.2852 -.4113 -.8804 -.1822 .1812 -.5553 -.0844 .2985 .1041 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 C 8 A 60 C 63 ? 'X-RAY DIFFRACTION' ? 2 2 B 2 D 5 B 59 D 62 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 A 1 C 21 A 21 ? 'X-RAY DIFFRACTION' ? 4 3 D 22 B 1 D 42 B 21 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 CNS . ? ? ? ? phasing ? ? ? 7 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 20 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 20 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.353 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.066 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 1 ? ? "C1'" C DT 1 ? ? N1 C DT 1 ? ? 112.61 108.30 4.31 0.30 N 2 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 111.54 108.30 3.24 0.30 N 3 1 "O4'" C DG 5 ? ? "C1'" C DG 5 ? ? N9 C DG 5 ? ? 111.61 108.30 3.31 0.30 N 4 1 "C3'" C DC 6 ? ? "O3'" C DC 6 ? ? P C DC 7 ? ? 127.26 119.70 7.56 1.20 Y 5 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 111.20 108.30 2.90 0.30 N 6 1 "C3'" C DT 11 ? ? "C2'" C DT 11 ? ? "C1'" C DT 11 ? ? 97.24 102.40 -5.16 0.80 N 7 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 111.57 108.30 3.27 0.30 N 8 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.35 108.30 2.05 0.30 N 9 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 113.50 108.30 5.20 0.30 N 10 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1 C DC 17 ? ? 110.35 108.30 2.05 0.30 N 11 1 P C DC 18 ? ? "O5'" C DC 18 ? ? "C5'" C DC 18 ? ? 108.93 120.90 -11.97 1.60 N 12 1 "O4'" C DA 21 ? ? "C1'" C DA 21 ? ? N9 C DA 21 ? ? 112.53 108.30 4.23 0.30 N 13 1 "O4'" D DA 22 ? ? "C1'" D DA 22 ? ? N9 D DA 22 ? ? 110.46 108.30 2.16 0.30 N 14 1 "O4'" D DT 23 ? ? "C1'" D DT 23 ? ? N1 D DT 23 ? ? 111.01 108.30 2.71 0.30 N 15 1 "O4'" D DC 24 ? ? "C1'" D DC 24 ? ? N1 D DC 24 ? ? 113.57 108.30 5.27 0.30 N 16 1 "C3'" D DG 26 ? ? "C2'" D DG 26 ? ? "C1'" D DG 26 ? ? 96.69 102.40 -5.71 0.80 N 17 1 "O4'" D DG 26 ? ? "C1'" D DG 26 ? ? N9 D DG 26 ? ? 115.57 108.30 7.27 0.30 N 18 1 "O4'" D DG 28 ? ? "C1'" D DG 28 ? ? N9 D DG 28 ? ? 110.51 108.30 2.21 0.30 N 19 1 "O4'" D DG 29 ? ? "C1'" D DG 29 ? ? N9 D DG 29 ? ? 111.34 108.30 3.04 0.30 N 20 1 C2 D DA 30 ? ? N3 D DA 30 ? ? C4 D DA 30 ? ? 113.68 110.60 3.08 0.50 N 21 1 "O4'" D DT 31 ? ? "C1'" D DT 31 ? ? N1 D DT 31 ? ? 111.23 108.30 2.93 0.30 N 22 1 "O4'" D DC 34 ? ? "C1'" D DC 34 ? ? N1 D DC 34 ? ? 111.76 108.30 3.46 0.30 N 23 1 "O4'" D DT 36 ? ? "C1'" D DT 36 ? ? N1 D DT 36 ? ? 112.02 108.30 3.72 0.30 N 24 1 "C3'" D DG 38 ? ? "C2'" D DG 38 ? ? "C1'" D DG 38 ? ? 96.97 102.40 -5.43 0.80 N 25 1 "O4'" D DG 38 ? ? "C1'" D DG 38 ? ? N9 D DG 38 ? ? 111.21 108.30 2.91 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 17 ? CD ? C LYS 20 CD 2 1 Y 1 A LYS 17 ? CE ? C LYS 20 CE 3 1 Y 1 A LYS 17 ? NZ ? C LYS 20 NZ 4 1 Y 1 A LYS 58 ? CD ? C LYS 61 CD 5 1 Y 1 A LYS 58 ? CE ? C LYS 61 CE 6 1 Y 1 A LYS 58 ? NZ ? C LYS 61 NZ 7 1 Y 1 A THR 60 ? CB ? C THR 63 CB 8 1 Y 1 A THR 60 ? OG1 ? C THR 63 OG1 9 1 Y 1 A THR 60 ? CG2 ? C THR 63 CG2 10 1 Y 1 B LYS 2 ? CD ? D LYS 5 CD 11 1 Y 1 B LYS 2 ? CE ? D LYS 5 CE 12 1 Y 1 B LYS 2 ? NZ ? D LYS 5 NZ 13 1 Y 1 B LYS 58 ? CB ? D LYS 61 CB 14 1 Y 1 B LYS 58 ? CG ? D LYS 61 CG 15 1 Y 1 B LYS 58 ? CD ? D LYS 61 CD 16 1 Y 1 B LYS 58 ? CE ? D LYS 61 CE 17 1 Y 1 B LYS 58 ? NZ ? D LYS 61 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? C GLY 1 2 1 Y 1 A SER -1 ? C SER 2 3 1 Y 1 A ASP 0 ? C ASP 3 4 1 Y 1 A GLU 1 ? C GLU 4 5 1 Y 1 A LYS 2 ? C LYS 5 6 1 Y 1 A ARG 3 ? C ARG 6 7 1 Y 1 A PRO 4 ? C PRO 7 8 1 Y 1 B GLY -2 ? D GLY 1 9 1 Y 1 B SER -1 ? D SER 2 10 1 Y 1 B ASP 0 ? D ASP 3 11 1 Y 1 B GLU 1 ? D GLU 4 12 1 Y 1 B THR 60 ? D THR 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3MO N2 N N N 1 3MO C4 C N N 2 3MO O6 O N N 3 3MO C1 C N N 4 3MO O5 O N N 5 3MO C3 C N N 6 3MO C7 C N N 7 3MO H41 H N N 8 3MO H42 H N N 9 3MO H31 H N N 10 3MO H32 H N N 11 3MO H71 H N N 12 3MO H72 H N N 13 3MO H73 H N N 14 ALA N N N N 15 ALA CA C N S 16 ALA C C N N 17 ALA O O N N 18 ALA CB C N N 19 ALA OXT O N N 20 ALA H H N N 21 ALA H2 H N N 22 ALA HA H N N 23 ALA HB1 H N N 24 ALA HB2 H N N 25 ALA HB3 H N N 26 ALA HXT H N N 27 ARG N N N N 28 ARG CA C N S 29 ARG C C N N 30 ARG O O N N 31 ARG CB C N N 32 ARG CG C N N 33 ARG CD C N N 34 ARG NE N N N 35 ARG CZ C N N 36 ARG NH1 N N N 37 ARG NH2 N N N 38 ARG OXT O N N 39 ARG H H N N 40 ARG H2 H N N 41 ARG HA H N N 42 ARG HB2 H N N 43 ARG HB3 H N N 44 ARG HG2 H N N 45 ARG HG3 H N N 46 ARG HD2 H N N 47 ARG HD3 H N N 48 ARG HE H N N 49 ARG HH11 H N N 50 ARG HH12 H N N 51 ARG HH21 H N N 52 ARG HH22 H N N 53 ARG HXT H N N 54 ASN N N N N 55 ASN CA C N S 56 ASN C C N N 57 ASN O O N N 58 ASN CB C N N 59 ASN CG C N N 60 ASN OD1 O N N 61 ASN ND2 N N N 62 ASN OXT O N N 63 ASN H H N N 64 ASN H2 H N N 65 ASN HA H N N 66 ASN HB2 H N N 67 ASN HB3 H N N 68 ASN HD21 H N N 69 ASN HD22 H N N 70 ASN HXT H N N 71 ASP N N N N 72 ASP CA C N S 73 ASP C C N N 74 ASP O O N N 75 ASP CB C N N 76 ASP CG C N N 77 ASP OD1 O N N 78 ASP OD2 O N N 79 ASP OXT O N N 80 ASP H H N N 81 ASP H2 H N N 82 ASP HA H N N 83 ASP HB2 H N N 84 ASP HB3 H N N 85 ASP HD2 H N N 86 ASP HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 GOL C1 C N N 280 GOL O1 O N N 281 GOL C2 C N N 282 GOL O2 O N N 283 GOL C3 C N N 284 GOL O3 O N N 285 GOL H11 H N N 286 GOL H12 H N N 287 GOL HO1 H N N 288 GOL H2 H N N 289 GOL HO2 H N N 290 GOL H31 H N N 291 GOL H32 H N N 292 GOL HO3 H N N 293 HOH O O N N 294 HOH H1 H N N 295 HOH H2 H N N 296 ILE N N N N 297 ILE CA C N S 298 ILE C C N N 299 ILE O O N N 300 ILE CB C N S 301 ILE CG1 C N N 302 ILE CG2 C N N 303 ILE CD1 C N N 304 ILE OXT O N N 305 ILE H H N N 306 ILE H2 H N N 307 ILE HA H N N 308 ILE HB H N N 309 ILE HG12 H N N 310 ILE HG13 H N N 311 ILE HG21 H N N 312 ILE HG22 H N N 313 ILE HG23 H N N 314 ILE HD11 H N N 315 ILE HD12 H N N 316 ILE HD13 H N N 317 ILE HXT H N N 318 LEU N N N N 319 LEU CA C N S 320 LEU C C N N 321 LEU O O N N 322 LEU CB C N N 323 LEU CG C N N 324 LEU CD1 C N N 325 LEU CD2 C N N 326 LEU OXT O N N 327 LEU H H N N 328 LEU H2 H N N 329 LEU HA H N N 330 LEU HB2 H N N 331 LEU HB3 H N N 332 LEU HG H N N 333 LEU HD11 H N N 334 LEU HD12 H N N 335 LEU HD13 H N N 336 LEU HD21 H N N 337 LEU HD22 H N N 338 LEU HD23 H N N 339 LEU HXT H N N 340 LYS N N N N 341 LYS CA C N S 342 LYS C C N N 343 LYS O O N N 344 LYS CB C N N 345 LYS CG C N N 346 LYS CD C N N 347 LYS CE C N N 348 LYS NZ N N N 349 LYS OXT O N N 350 LYS H H N N 351 LYS H2 H N N 352 LYS HA H N N 353 LYS HB2 H N N 354 LYS HB3 H N N 355 LYS HG2 H N N 356 LYS HG3 H N N 357 LYS HD2 H N N 358 LYS HD3 H N N 359 LYS HE2 H N N 360 LYS HE3 H N N 361 LYS HZ1 H N N 362 LYS HZ2 H N N 363 LYS HZ3 H N N 364 LYS HXT H N N 365 MET N N N N 366 MET CA C N S 367 MET C C N N 368 MET O O N N 369 MET CB C N N 370 MET CG C N N 371 MET SD S N N 372 MET CE C N N 373 MET OXT O N N 374 MET H H N N 375 MET H2 H N N 376 MET HA H N N 377 MET HB2 H N N 378 MET HB3 H N N 379 MET HG2 H N N 380 MET HG3 H N N 381 MET HE1 H N N 382 MET HE2 H N N 383 MET HE3 H N N 384 MET HXT H N N 385 PHE N N N N 386 PHE CA C N S 387 PHE C C N N 388 PHE O O N N 389 PHE CB C N N 390 PHE CG C Y N 391 PHE CD1 C Y N 392 PHE CD2 C Y N 393 PHE CE1 C Y N 394 PHE CE2 C Y N 395 PHE CZ C Y N 396 PHE OXT O N N 397 PHE H H N N 398 PHE H2 H N N 399 PHE HA H N N 400 PHE HB2 H N N 401 PHE HB3 H N N 402 PHE HD1 H N N 403 PHE HD2 H N N 404 PHE HE1 H N N 405 PHE HE2 H N N 406 PHE HZ H N N 407 PHE HXT H N N 408 PRO N N N N 409 PRO CA C N S 410 PRO C C N N 411 PRO O O N N 412 PRO CB C N N 413 PRO CG C N N 414 PRO CD C N N 415 PRO OXT O N N 416 PRO H H N N 417 PRO HA H N N 418 PRO HB2 H N N 419 PRO HB3 H N N 420 PRO HG2 H N N 421 PRO HG3 H N N 422 PRO HD2 H N N 423 PRO HD3 H N N 424 PRO HXT H N N 425 SER N N N N 426 SER CA C N S 427 SER C C N N 428 SER O O N N 429 SER CB C N N 430 SER OG O N N 431 SER OXT O N N 432 SER H H N N 433 SER H2 H N N 434 SER HA H N N 435 SER HB2 H N N 436 SER HB3 H N N 437 SER HG H N N 438 SER HXT H N N 439 THR N N N N 440 THR CA C N S 441 THR C C N N 442 THR O O N N 443 THR CB C N R 444 THR OG1 O N N 445 THR CG2 C N N 446 THR OXT O N N 447 THR H H N N 448 THR H2 H N N 449 THR HA H N N 450 THR HB H N N 451 THR HG1 H N N 452 THR HG21 H N N 453 THR HG22 H N N 454 THR HG23 H N N 455 THR HXT H N N 456 TRP N N N N 457 TRP CA C N S 458 TRP C C N N 459 TRP O O N N 460 TRP CB C N N 461 TRP CG C Y N 462 TRP CD1 C Y N 463 TRP CD2 C Y N 464 TRP NE1 N Y N 465 TRP CE2 C Y N 466 TRP CE3 C Y N 467 TRP CZ2 C Y N 468 TRP CZ3 C Y N 469 TRP CH2 C Y N 470 TRP OXT O N N 471 TRP H H N N 472 TRP H2 H N N 473 TRP HA H N N 474 TRP HB2 H N N 475 TRP HB3 H N N 476 TRP HD1 H N N 477 TRP HE1 H N N 478 TRP HE3 H N N 479 TRP HZ2 H N N 480 TRP HZ3 H N N 481 TRP HH2 H N N 482 TRP HXT H N N 483 TYR N N N N 484 TYR CA C N S 485 TYR C C N N 486 TYR O O N N 487 TYR CB C N N 488 TYR CG C Y N 489 TYR CD1 C Y N 490 TYR CD2 C Y N 491 TYR CE1 C Y N 492 TYR CE2 C Y N 493 TYR CZ C Y N 494 TYR OH O N N 495 TYR OXT O N N 496 TYR H H N N 497 TYR H2 H N N 498 TYR HA H N N 499 TYR HB2 H N N 500 TYR HB3 H N N 501 TYR HD1 H N N 502 TYR HD2 H N N 503 TYR HE1 H N N 504 TYR HE2 H N N 505 TYR HH H N N 506 TYR HXT H N N 507 VAL N N N N 508 VAL CA C N S 509 VAL C C N N 510 VAL O O N N 511 VAL CB C N N 512 VAL CG1 C N N 513 VAL CG2 C N N 514 VAL OXT O N N 515 VAL H H N N 516 VAL H2 H N N 517 VAL HA H N N 518 VAL HB H N N 519 VAL HG11 H N N 520 VAL HG12 H N N 521 VAL HG13 H N N 522 VAL HG21 H N N 523 VAL HG22 H N N 524 VAL HG23 H N N 525 VAL HXT H N N 526 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3MO N2 C1 sing N N 1 3MO N2 C3 sing N N 2 3MO N2 C7 sing N N 3 3MO C4 O5 sing N N 4 3MO C4 C3 sing N N 5 3MO C4 H41 sing N N 6 3MO C4 H42 sing N N 7 3MO O6 C1 doub N N 8 3MO C1 O5 sing N N 9 3MO C3 H31 sing N N 10 3MO C3 H32 sing N N 11 3MO C7 H71 sing N N 12 3MO C7 H72 sing N N 13 3MO C7 H73 sing N N 14 ALA N CA sing N N 15 ALA N H sing N N 16 ALA N H2 sing N N 17 ALA CA C sing N N 18 ALA CA CB sing N N 19 ALA CA HA sing N N 20 ALA C O doub N N 21 ALA C OXT sing N N 22 ALA CB HB1 sing N N 23 ALA CB HB2 sing N N 24 ALA CB HB3 sing N N 25 ALA OXT HXT sing N N 26 ARG N CA sing N N 27 ARG N H sing N N 28 ARG N H2 sing N N 29 ARG CA C sing N N 30 ARG CA CB sing N N 31 ARG CA HA sing N N 32 ARG C O doub N N 33 ARG C OXT sing N N 34 ARG CB CG sing N N 35 ARG CB HB2 sing N N 36 ARG CB HB3 sing N N 37 ARG CG CD sing N N 38 ARG CG HG2 sing N N 39 ARG CG HG3 sing N N 40 ARG CD NE sing N N 41 ARG CD HD2 sing N N 42 ARG CD HD3 sing N N 43 ARG NE CZ sing N N 44 ARG NE HE sing N N 45 ARG CZ NH1 sing N N 46 ARG CZ NH2 doub N N 47 ARG NH1 HH11 sing N N 48 ARG NH1 HH12 sing N N 49 ARG NH2 HH21 sing N N 50 ARG NH2 HH22 sing N N 51 ARG OXT HXT sing N N 52 ASN N CA sing N N 53 ASN N H sing N N 54 ASN N H2 sing N N 55 ASN CA C sing N N 56 ASN CA CB sing N N 57 ASN CA HA sing N N 58 ASN C O doub N N 59 ASN C OXT sing N N 60 ASN CB CG sing N N 61 ASN CB HB2 sing N N 62 ASN CB HB3 sing N N 63 ASN CG OD1 doub N N 64 ASN CG ND2 sing N N 65 ASN ND2 HD21 sing N N 66 ASN ND2 HD22 sing N N 67 ASN OXT HXT sing N N 68 ASP N CA sing N N 69 ASP N H sing N N 70 ASP N H2 sing N N 71 ASP CA C sing N N 72 ASP CA CB sing N N 73 ASP CA HA sing N N 74 ASP C O doub N N 75 ASP C OXT sing N N 76 ASP CB CG sing N N 77 ASP CB HB2 sing N N 78 ASP CB HB3 sing N N 79 ASP CG OD1 doub N N 80 ASP CG OD2 sing N N 81 ASP OD2 HD2 sing N N 82 ASP OXT HXT sing N N 83 DA OP3 P sing N N 84 DA OP3 HOP3 sing N N 85 DA P OP1 doub N N 86 DA P OP2 sing N N 87 DA P "O5'" sing N N 88 DA OP2 HOP2 sing N N 89 DA "O5'" "C5'" sing N N 90 DA "C5'" "C4'" sing N N 91 DA "C5'" "H5'" sing N N 92 DA "C5'" "H5''" sing N N 93 DA "C4'" "O4'" sing N N 94 DA "C4'" "C3'" sing N N 95 DA "C4'" "H4'" sing N N 96 DA "O4'" "C1'" sing N N 97 DA "C3'" "O3'" sing N N 98 DA "C3'" "C2'" sing N N 99 DA "C3'" "H3'" sing N N 100 DA "O3'" "HO3'" sing N N 101 DA "C2'" "C1'" sing N N 102 DA "C2'" "H2'" sing N N 103 DA "C2'" "H2''" sing N N 104 DA "C1'" N9 sing N N 105 DA "C1'" "H1'" sing N N 106 DA N9 C8 sing Y N 107 DA N9 C4 sing Y N 108 DA C8 N7 doub Y N 109 DA C8 H8 sing N N 110 DA N7 C5 sing Y N 111 DA C5 C6 sing Y N 112 DA C5 C4 doub Y N 113 DA C6 N6 sing N N 114 DA C6 N1 doub Y N 115 DA N6 H61 sing N N 116 DA N6 H62 sing N N 117 DA N1 C2 sing Y N 118 DA C2 N3 doub Y N 119 DA C2 H2 sing N N 120 DA N3 C4 sing Y N 121 DC OP3 P sing N N 122 DC OP3 HOP3 sing N N 123 DC P OP1 doub N N 124 DC P OP2 sing N N 125 DC P "O5'" sing N N 126 DC OP2 HOP2 sing N N 127 DC "O5'" "C5'" sing N N 128 DC "C5'" "C4'" sing N N 129 DC "C5'" "H5'" sing N N 130 DC "C5'" "H5''" sing N N 131 DC "C4'" "O4'" sing N N 132 DC "C4'" "C3'" sing N N 133 DC "C4'" "H4'" sing N N 134 DC "O4'" "C1'" sing N N 135 DC "C3'" "O3'" sing N N 136 DC "C3'" "C2'" sing N N 137 DC "C3'" "H3'" sing N N 138 DC "O3'" "HO3'" sing N N 139 DC "C2'" "C1'" sing N N 140 DC "C2'" "H2'" sing N N 141 DC "C2'" "H2''" sing N N 142 DC "C1'" N1 sing N N 143 DC "C1'" "H1'" sing N N 144 DC N1 C2 sing N N 145 DC N1 C6 sing N N 146 DC C2 O2 doub N N 147 DC C2 N3 sing N N 148 DC N3 C4 doub N N 149 DC C4 N4 sing N N 150 DC C4 C5 sing N N 151 DC N4 H41 sing N N 152 DC N4 H42 sing N N 153 DC C5 C6 doub N N 154 DC C5 H5 sing N N 155 DC C6 H6 sing N N 156 DG OP3 P sing N N 157 DG OP3 HOP3 sing N N 158 DG P OP1 doub N N 159 DG P OP2 sing N N 160 DG P "O5'" sing N N 161 DG OP2 HOP2 sing N N 162 DG "O5'" "C5'" sing N N 163 DG "C5'" "C4'" sing N N 164 DG "C5'" "H5'" sing N N 165 DG "C5'" "H5''" sing N N 166 DG "C4'" "O4'" sing N N 167 DG "C4'" "C3'" sing N N 168 DG "C4'" "H4'" sing N N 169 DG "O4'" "C1'" sing N N 170 DG "C3'" "O3'" sing N N 171 DG "C3'" "C2'" sing N N 172 DG "C3'" "H3'" sing N N 173 DG "O3'" "HO3'" sing N N 174 DG "C2'" "C1'" sing N N 175 DG "C2'" "H2'" sing N N 176 DG "C2'" "H2''" sing N N 177 DG "C1'" N9 sing N N 178 DG "C1'" "H1'" sing N N 179 DG N9 C8 sing Y N 180 DG N9 C4 sing Y N 181 DG C8 N7 doub Y N 182 DG C8 H8 sing N N 183 DG N7 C5 sing Y N 184 DG C5 C6 sing N N 185 DG C5 C4 doub Y N 186 DG C6 O6 doub N N 187 DG C6 N1 sing N N 188 DG N1 C2 sing N N 189 DG N1 H1 sing N N 190 DG C2 N2 sing N N 191 DG C2 N3 doub N N 192 DG N2 H21 sing N N 193 DG N2 H22 sing N N 194 DG N3 C4 sing N N 195 DT OP3 P sing N N 196 DT OP3 HOP3 sing N N 197 DT P OP1 doub N N 198 DT P OP2 sing N N 199 DT P "O5'" sing N N 200 DT OP2 HOP2 sing N N 201 DT "O5'" "C5'" sing N N 202 DT "C5'" "C4'" sing N N 203 DT "C5'" "H5'" sing N N 204 DT "C5'" "H5''" sing N N 205 DT "C4'" "O4'" sing N N 206 DT "C4'" "C3'" sing N N 207 DT "C4'" "H4'" sing N N 208 DT "O4'" "C1'" sing N N 209 DT "C3'" "O3'" sing N N 210 DT "C3'" "C2'" sing N N 211 DT "C3'" "H3'" sing N N 212 DT "O3'" "HO3'" sing N N 213 DT "C2'" "C1'" sing N N 214 DT "C2'" "H2'" sing N N 215 DT "C2'" "H2''" sing N N 216 DT "C1'" N1 sing N N 217 DT "C1'" "H1'" sing N N 218 DT N1 C2 sing N N 219 DT N1 C6 sing N N 220 DT C2 O2 doub N N 221 DT C2 N3 sing N N 222 DT N3 C4 sing N N 223 DT N3 H3 sing N N 224 DT C4 O4 doub N N 225 DT C4 C5 sing N N 226 DT C5 C7 sing N N 227 DT C5 C6 doub N N 228 DT C7 H71 sing N N 229 DT C7 H72 sing N N 230 DT C7 H73 sing N N 231 DT C6 H6 sing N N 232 GLN N CA sing N N 233 GLN N H sing N N 234 GLN N H2 sing N N 235 GLN CA C sing N N 236 GLN CA CB sing N N 237 GLN CA HA sing N N 238 GLN C O doub N N 239 GLN C OXT sing N N 240 GLN CB CG sing N N 241 GLN CB HB2 sing N N 242 GLN CB HB3 sing N N 243 GLN CG CD sing N N 244 GLN CG HG2 sing N N 245 GLN CG HG3 sing N N 246 GLN CD OE1 doub N N 247 GLN CD NE2 sing N N 248 GLN NE2 HE21 sing N N 249 GLN NE2 HE22 sing N N 250 GLN OXT HXT sing N N 251 GLU N CA sing N N 252 GLU N H sing N N 253 GLU N H2 sing N N 254 GLU CA C sing N N 255 GLU CA CB sing N N 256 GLU CA HA sing N N 257 GLU C O doub N N 258 GLU C OXT sing N N 259 GLU CB CG sing N N 260 GLU CB HB2 sing N N 261 GLU CB HB3 sing N N 262 GLU CG CD sing N N 263 GLU CG HG2 sing N N 264 GLU CG HG3 sing N N 265 GLU CD OE1 doub N N 266 GLU CD OE2 sing N N 267 GLU OE2 HE2 sing N N 268 GLU OXT HXT sing N N 269 GLY N CA sing N N 270 GLY N H sing N N 271 GLY N H2 sing N N 272 GLY CA C sing N N 273 GLY CA HA2 sing N N 274 GLY CA HA3 sing N N 275 GLY C O doub N N 276 GLY C OXT sing N N 277 GLY OXT HXT sing N N 278 GOL C1 O1 sing N N 279 GOL C1 C2 sing N N 280 GOL C1 H11 sing N N 281 GOL C1 H12 sing N N 282 GOL O1 HO1 sing N N 283 GOL C2 O2 sing N N 284 GOL C2 C3 sing N N 285 GOL C2 H2 sing N N 286 GOL O2 HO2 sing N N 287 GOL C3 O3 sing N N 288 GOL C3 H31 sing N N 289 GOL C3 H32 sing N N 290 GOL O3 HO3 sing N N 291 HOH O H1 sing N N 292 HOH O H2 sing N N 293 ILE N CA sing N N 294 ILE N H sing N N 295 ILE N H2 sing N N 296 ILE CA C sing N N 297 ILE CA CB sing N N 298 ILE CA HA sing N N 299 ILE C O doub N N 300 ILE C OXT sing N N 301 ILE CB CG1 sing N N 302 ILE CB CG2 sing N N 303 ILE CB HB sing N N 304 ILE CG1 CD1 sing N N 305 ILE CG1 HG12 sing N N 306 ILE CG1 HG13 sing N N 307 ILE CG2 HG21 sing N N 308 ILE CG2 HG22 sing N N 309 ILE CG2 HG23 sing N N 310 ILE CD1 HD11 sing N N 311 ILE CD1 HD12 sing N N 312 ILE CD1 HD13 sing N N 313 ILE OXT HXT sing N N 314 LEU N CA sing N N 315 LEU N H sing N N 316 LEU N H2 sing N N 317 LEU CA C sing N N 318 LEU CA CB sing N N 319 LEU CA HA sing N N 320 LEU C O doub N N 321 LEU C OXT sing N N 322 LEU CB CG sing N N 323 LEU CB HB2 sing N N 324 LEU CB HB3 sing N N 325 LEU CG CD1 sing N N 326 LEU CG CD2 sing N N 327 LEU CG HG sing N N 328 LEU CD1 HD11 sing N N 329 LEU CD1 HD12 sing N N 330 LEU CD1 HD13 sing N N 331 LEU CD2 HD21 sing N N 332 LEU CD2 HD22 sing N N 333 LEU CD2 HD23 sing N N 334 LEU OXT HXT sing N N 335 LYS N CA sing N N 336 LYS N H sing N N 337 LYS N H2 sing N N 338 LYS CA C sing N N 339 LYS CA CB sing N N 340 LYS CA HA sing N N 341 LYS C O doub N N 342 LYS C OXT sing N N 343 LYS CB CG sing N N 344 LYS CB HB2 sing N N 345 LYS CB HB3 sing N N 346 LYS CG CD sing N N 347 LYS CG HG2 sing N N 348 LYS CG HG3 sing N N 349 LYS CD CE sing N N 350 LYS CD HD2 sing N N 351 LYS CD HD3 sing N N 352 LYS CE NZ sing N N 353 LYS CE HE2 sing N N 354 LYS CE HE3 sing N N 355 LYS NZ HZ1 sing N N 356 LYS NZ HZ2 sing N N 357 LYS NZ HZ3 sing N N 358 LYS OXT HXT sing N N 359 MET N CA sing N N 360 MET N H sing N N 361 MET N H2 sing N N 362 MET CA C sing N N 363 MET CA CB sing N N 364 MET CA HA sing N N 365 MET C O doub N N 366 MET C OXT sing N N 367 MET CB CG sing N N 368 MET CB HB2 sing N N 369 MET CB HB3 sing N N 370 MET CG SD sing N N 371 MET CG HG2 sing N N 372 MET CG HG3 sing N N 373 MET SD CE sing N N 374 MET CE HE1 sing N N 375 MET CE HE2 sing N N 376 MET CE HE3 sing N N 377 MET OXT HXT sing N N 378 PHE N CA sing N N 379 PHE N H sing N N 380 PHE N H2 sing N N 381 PHE CA C sing N N 382 PHE CA CB sing N N 383 PHE CA HA sing N N 384 PHE C O doub N N 385 PHE C OXT sing N N 386 PHE CB CG sing N N 387 PHE CB HB2 sing N N 388 PHE CB HB3 sing N N 389 PHE CG CD1 doub Y N 390 PHE CG CD2 sing Y N 391 PHE CD1 CE1 sing Y N 392 PHE CD1 HD1 sing N N 393 PHE CD2 CE2 doub Y N 394 PHE CD2 HD2 sing N N 395 PHE CE1 CZ doub Y N 396 PHE CE1 HE1 sing N N 397 PHE CE2 CZ sing Y N 398 PHE CE2 HE2 sing N N 399 PHE CZ HZ sing N N 400 PHE OXT HXT sing N N 401 PRO N CA sing N N 402 PRO N CD sing N N 403 PRO N H sing N N 404 PRO CA C sing N N 405 PRO CA CB sing N N 406 PRO CA HA sing N N 407 PRO C O doub N N 408 PRO C OXT sing N N 409 PRO CB CG sing N N 410 PRO CB HB2 sing N N 411 PRO CB HB3 sing N N 412 PRO CG CD sing N N 413 PRO CG HG2 sing N N 414 PRO CG HG3 sing N N 415 PRO CD HD2 sing N N 416 PRO CD HD3 sing N N 417 PRO OXT HXT sing N N 418 SER N CA sing N N 419 SER N H sing N N 420 SER N H2 sing N N 421 SER CA C sing N N 422 SER CA CB sing N N 423 SER CA HA sing N N 424 SER C O doub N N 425 SER C OXT sing N N 426 SER CB OG sing N N 427 SER CB HB2 sing N N 428 SER CB HB3 sing N N 429 SER OG HG sing N N 430 SER OXT HXT sing N N 431 THR N CA sing N N 432 THR N H sing N N 433 THR N H2 sing N N 434 THR CA C sing N N 435 THR CA CB sing N N 436 THR CA HA sing N N 437 THR C O doub N N 438 THR C OXT sing N N 439 THR CB OG1 sing N N 440 THR CB CG2 sing N N 441 THR CB HB sing N N 442 THR OG1 HG1 sing N N 443 THR CG2 HG21 sing N N 444 THR CG2 HG22 sing N N 445 THR CG2 HG23 sing N N 446 THR OXT HXT sing N N 447 TRP N CA sing N N 448 TRP N H sing N N 449 TRP N H2 sing N N 450 TRP CA C sing N N 451 TRP CA CB sing N N 452 TRP CA HA sing N N 453 TRP C O doub N N 454 TRP C OXT sing N N 455 TRP CB CG sing N N 456 TRP CB HB2 sing N N 457 TRP CB HB3 sing N N 458 TRP CG CD1 doub Y N 459 TRP CG CD2 sing Y N 460 TRP CD1 NE1 sing Y N 461 TRP CD1 HD1 sing N N 462 TRP CD2 CE2 doub Y N 463 TRP CD2 CE3 sing Y N 464 TRP NE1 CE2 sing Y N 465 TRP NE1 HE1 sing N N 466 TRP CE2 CZ2 sing Y N 467 TRP CE3 CZ3 doub Y N 468 TRP CE3 HE3 sing N N 469 TRP CZ2 CH2 doub Y N 470 TRP CZ2 HZ2 sing N N 471 TRP CZ3 CH2 sing Y N 472 TRP CZ3 HZ3 sing N N 473 TRP CH2 HH2 sing N N 474 TRP OXT HXT sing N N 475 TYR N CA sing N N 476 TYR N H sing N N 477 TYR N H2 sing N N 478 TYR CA C sing N N 479 TYR CA CB sing N N 480 TYR CA HA sing N N 481 TYR C O doub N N 482 TYR C OXT sing N N 483 TYR CB CG sing N N 484 TYR CB HB2 sing N N 485 TYR CB HB3 sing N N 486 TYR CG CD1 doub Y N 487 TYR CG CD2 sing Y N 488 TYR CD1 CE1 sing Y N 489 TYR CD1 HD1 sing N N 490 TYR CD2 CE2 doub Y N 491 TYR CD2 HD2 sing N N 492 TYR CE1 CZ doub Y N 493 TYR CE1 HE1 sing N N 494 TYR CE2 CZ sing Y N 495 TYR CE2 HE2 sing N N 496 TYR CZ OH sing N N 497 TYR OH HH sing N N 498 TYR OXT HXT sing N N 499 VAL N CA sing N N 500 VAL N H sing N N 501 VAL N H2 sing N N 502 VAL CA C sing N N 503 VAL CA CB sing N N 504 VAL CA HA sing N N 505 VAL C O doub N N 506 VAL C OXT sing N N 507 VAL CB CG1 sing N N 508 VAL CB CG2 sing N N 509 VAL CB HB sing N N 510 VAL CG1 HG11 sing N N 511 VAL CG1 HG12 sing N N 512 VAL CG1 HG13 sing N N 513 VAL CG2 HG21 sing N N 514 VAL CG2 HG22 sing N N 515 VAL CG2 HG23 sing N N 516 VAL OXT HXT sing N N 517 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOS 'double helix' 2HOS 'a-form double helix' 2HOS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 -0.172 -0.248 -0.165 -4.310 -6.053 3.570 1 C_DT2:DA42_D C 2 ? D 42 ? 20 1 1 A DT 3 1_555 B DA 20 1_555 0.029 -0.277 0.166 -1.303 -5.969 4.398 2 C_DT3:DA41_D C 3 ? D 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 0.585 -0.382 -0.210 4.334 -20.728 6.932 3 C_DT4:DA40_D C 4 ? D 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.727 -0.498 -0.262 -6.674 -9.288 -3.335 4 C_DG5:DC39_D C 5 ? D 39 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 -0.147 0.013 0.129 -4.865 -6.940 0.777 5 C_DC6:DG38_D C 6 ? D 38 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 0.779 -0.457 -0.147 3.474 -9.957 -3.456 6 C_DC7:DG37_D C 7 ? D 37 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 -0.435 -0.453 -0.020 -5.913 -10.264 0.081 7 C_DA8:DT36_D C 8 ? D 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 -0.805 -0.177 -0.007 2.446 -11.534 -7.204 8 C_DT9:DA35_D C 9 ? D 35 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.541 -0.282 -0.040 -3.629 -7.201 2.491 9 C_DG10:DC34_D C 10 ? D 34 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 0.065 -0.073 0.051 6.764 -7.145 4.765 10 C_DT11:DA33_D C 11 ? D 33 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 0.369 -0.233 -0.068 4.740 -17.019 -2.740 11 C_DA12:DT32_D C 12 ? D 32 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 0.013 -0.289 -0.046 -2.514 -12.670 4.236 12 C_DA13:DT31_D C 13 ? D 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.186 -0.196 -0.109 -0.932 -13.362 3.066 13 C_DT14:DA30_D C 14 ? D 30 ? 20 1 1 A DC 15 1_555 B DG 8 1_555 0.242 -0.258 -0.086 0.971 -8.322 -0.408 14 C_DC15:DG29_D C 15 ? D 29 ? 19 1 1 A DC 16 1_555 B DG 7 1_555 0.209 -0.287 -0.153 12.230 -10.898 0.512 15 C_DC16:DG28_D C 16 ? D 28 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 0.269 -0.289 0.622 -0.865 -17.002 2.074 16 C_DC17:DG27_D C 17 ? D 27 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 0.201 -0.234 0.289 -8.581 -8.183 -3.369 17 C_DC18:DG26_D C 18 ? D 26 ? 19 1 1 A DG 19 1_555 B DC 4 1_555 -0.135 -0.142 0.187 11.907 -2.810 0.483 18 C_DG19:DC25_D C 19 ? D 25 ? 19 1 1 A DG 20 1_555 B DC 3 1_555 -0.464 -0.366 -0.459 -2.515 -12.981 -0.756 19 C_DG20:DC24_D C 20 ? D 24 ? 19 1 1 A DA 21 1_555 B DT 2 1_555 0.174 -0.176 -0.095 6.184 -18.062 2.550 20 C_DA21:DT23_D C 21 ? D 23 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 1.198 0.928 3.223 2.619 10.813 37.608 0.040 -1.461 3.424 16.340 -3.958 39.162 1 CC_DT2DT3:DA41DA42_DD C 2 ? D 42 ? C 3 ? D 41 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 0.048 0.269 3.149 3.928 4.720 32.816 -0.292 0.549 3.141 8.265 -6.878 33.371 2 CC_DT3DT4:DA40DA41_DD C 3 ? D 41 ? C 4 ? D 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.006 -0.309 3.571 1.622 12.409 27.834 -3.252 0.337 3.146 24.301 -3.176 30.468 3 CC_DT4DG5:DC39DA40_DD C 4 ? D 40 ? C 5 ? D 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 0.070 0.364 3.193 -3.523 -0.450 39.903 0.581 -0.494 3.171 -0.657 5.150 40.054 4 CC_DG5DC6:DG38DC39_DD C 5 ? D 39 ? C 6 ? D 38 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 -0.427 0.316 3.201 3.509 -3.930 35.840 1.043 1.165 3.096 -6.343 -5.664 36.213 5 CC_DC6DC7:DG37DG38_DD C 6 ? D 38 ? C 7 ? D 37 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 0.146 0.989 3.477 -1.264 0.438 39.854 1.397 -0.369 3.482 0.642 1.854 39.876 6 CC_DC7DA8:DT36DG37_DD C 7 ? D 37 ? C 8 ? D 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 -0.518 -0.250 3.070 -1.308 -1.451 26.771 -0.186 0.797 3.100 -3.128 2.819 26.841 7 CC_DA8DT9:DA35DT36_DD C 8 ? D 36 ? C 9 ? D 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 0.896 0.549 3.458 1.769 5.361 42.056 0.173 -1.045 3.532 7.430 -2.452 42.417 8 CC_DT9DG10:DC34DA35_DD C 9 ? D 35 ? C 10 ? D 34 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 -0.112 -0.065 3.053 -0.583 3.994 27.213 -1.050 0.101 3.015 8.430 1.231 27.506 9 CC_DG10DT11:DA33DC34_DD C 10 ? D 34 ? C 11 ? D 33 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.684 1.011 3.312 -0.336 3.695 44.713 0.982 0.865 3.386 4.847 0.440 44.859 10 CC_DT11DA12:DT32DA33_DD C 11 ? D 33 ? C 12 ? D 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.679 -0.422 3.404 -1.316 0.030 33.705 -0.732 -1.392 3.375 0.051 2.268 33.730 11 CC_DA12DA13:DT31DT32_DD C 12 ? D 32 ? C 13 ? D 31 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.729 -0.781 3.215 -0.139 1.635 30.149 -1.824 1.372 3.172 3.140 0.267 30.192 12 CC_DA13DT14:DA30DT31_DD C 13 ? D 31 ? C 14 ? D 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DC 15 1_555 B DG 8 1_555 -0.143 -0.384 3.268 -1.923 0.819 35.624 -0.745 -0.045 3.261 1.338 3.140 35.683 13 CC_DT14DC15:DG29DA30_DD C 14 ? D 30 ? C 15 ? D 29 ? 1 A DC 15 1_555 B DG 8 1_555 A DC 16 1_555 B DG 7 1_555 0.520 -0.278 3.079 0.433 6.955 29.915 -1.802 -0.903 2.948 13.249 -0.826 30.698 14 CC_DC15DC16:DG28DG29_DD C 15 ? D 29 ? C 16 ? D 28 ? 1 A DC 16 1_555 B DG 7 1_555 A DC 17 1_555 B DG 6 1_555 -0.272 -0.877 3.618 -8.272 4.472 38.287 -1.885 -0.676 3.480 6.695 12.386 39.383 15 CC_DC16DC17:DG27DG28_DD C 16 ? D 28 ? C 17 ? D 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.138 -0.905 3.393 5.443 3.595 33.719 -2.111 0.642 3.264 6.127 -9.275 34.326 16 CC_DC17DC18:DG26DG27_DD C 17 ? D 27 ? C 18 ? D 26 ? 1 A DC 18 1_555 B DG 5 1_555 A DG 19 1_555 B DC 4 1_555 0.010 0.058 2.890 3.468 5.524 28.754 -0.931 0.637 2.833 10.946 -6.872 29.470 17 CC_DC18DG19:DC25DG26_DD C 18 ? D 26 ? C 19 ? D 25 ? 1 A DG 19 1_555 B DC 4 1_555 A DG 20 1_555 B DC 3 1_555 -0.039 -0.653 3.697 5.203 9.075 30.872 -2.913 1.071 3.327 16.465 -9.440 32.555 18 CC_DG19DG20:DC24DC25_DD C 19 ? D 25 ? C 20 ? D 24 ? 1 A DG 20 1_555 B DC 3 1_555 A DA 21 1_555 B DT 2 1_555 0.223 -0.145 3.093 -2.795 4.758 33.805 -0.950 -0.793 3.017 8.116 4.766 34.239 19 CC_DG20DA21:DT23DC24_DD C 20 ? D 24 ? C 21 ? D 23 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 3-METHYL-1,3-OXAZOLIDIN-2-ONE 3MO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HDD _pdbx_initial_refinement_model.details 'PDB ENTRY 2HDD' #