data_2HOT # _entry.id 2HOT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOT pdb_00002hot 10.2210/pdb2hot/pdb NDB PD0841 ? ? RCSB RCSB038589 ? ? WWPDB D_1000038589 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HDD 'Engrailed Homeodomain Q50K mutant bound to the same DNA but unmodified' unspecified PDB 2HOS . unspecified # _pdbx_database_status.entry_id 2HOT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feldman, M.E.' 1 'Simon, M.D.' 2 'Shokat, K.M.' 3 # _citation.id primary _citation.title 'Structure and properties of a re-engineered homeodomain protein-DNA interface.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 1 _citation.page_first 755 _citation.page_last 760 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17240973 _citation.pdbx_database_id_DOI 10.1021/cb6003756 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simon, M.D.' 1 ? primary 'Feldman, M.E.' 2 ? primary 'Rauh, D.' 3 ? primary 'Maris, A.E.' 4 ? primary 'Wemmer, D.E.' 5 ? primary 'Shokat, K.M.' 6 ? # _cell.entry_id 2HOT _cell.length_a 127.856 _cell.length_b 45.046 _cell.length_c 73.568 _cell.angle_alpha 90.00 _cell.angle_beta 118.65 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOT _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3'" 6389.133 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3'" 6496.224 1 ? ? ? ? 3 polymer man 'Segmentation polarity homeobox protein engrailed' 7516.522 2 ? I45V,I47G,Q50K,K52M 'Engrailed homeodomain' ? 4 non-polymer syn 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE 125.125 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name Homeobox # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DG)(DG) (DA) ; TTTTGCCATGTAATCCCCGGA C ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DC)(DC)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATCCGGGGATTACATGGCAAA D ? 3 'polypeptide(L)' no no GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DC n 1 18 DC n 1 19 DG n 1 20 DG n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DG n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 GLY n 3 2 SER n 3 3 ASP n 3 4 GLU n 3 5 LYS n 3 6 ARG n 3 7 PRO n 3 8 ARG n 3 9 THR n 3 10 ALA n 3 11 PHE n 3 12 SER n 3 13 SER n 3 14 GLU n 3 15 GLN n 3 16 LEU n 3 17 ALA n 3 18 ARG n 3 19 LEU n 3 20 LYS n 3 21 ARG n 3 22 GLU n 3 23 PHE n 3 24 ASN n 3 25 GLU n 3 26 ASN n 3 27 ARG n 3 28 TYR n 3 29 LEU n 3 30 THR n 3 31 GLU n 3 32 ARG n 3 33 ARG n 3 34 ARG n 3 35 GLN n 3 36 GLN n 3 37 LEU n 3 38 SER n 3 39 SER n 3 40 GLU n 3 41 LEU n 3 42 GLY n 3 43 LEU n 3 44 ASN n 3 45 GLU n 3 46 ALA n 3 47 GLN n 3 48 VAL n 3 49 LYS n 3 50 GLY n 3 51 TRP n 3 52 PHE n 3 53 LYS n 3 54 ASN n 3 55 MET n 3 56 ARG n 3 57 ALA n 3 58 LYS n 3 59 ILE n 3 60 LYS n 3 61 LYS n 3 62 SER n 3 63 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene En _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pMal-c2 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMal-EnHDf _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Solid-phase DNA synthesis' 2 1 sample ? ? ? ? ? 'Commercial solid-phase DNA synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HMEN_DROME P02836 3 453 ? ? 2 PDB 2HOT 2HOT 1 ? ? ? 3 PDB 2HOT 2HOT 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HOT A 3 ? 63 ? P02836 453 ? 513 ? 0 60 2 1 2HOT B 3 ? 63 ? P02836 453 ? 513 ? 0 60 3 2 2HOT C 1 ? 21 ? 2HOT 1 ? 21 ? 1 21 4 3 2HOT D 1 ? 21 ? 2HOT 22 ? 42 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HOT GLY A 1 ? UNP P02836 ? ? 'cloning artifact' -2 1 1 2HOT SER A 2 ? UNP P02836 ? ? 'cloning artifact' -1 2 1 2HOT VAL A 48 ? UNP P02836 ILE 498 'engineered mutation' 45 3 1 2HOT GLY A 50 ? UNP P02836 ILE 500 'engineered mutation' 47 4 1 2HOT LYS A 53 ? UNP P02836 GLN 503 'engineered mutation' 50 5 1 2HOT MET A 55 ? UNP P02836 LYS 505 'engineered mutation' 52 6 2 2HOT GLY B 1 ? UNP P02836 ? ? 'cloning artifact' -2 7 2 2HOT SER B 2 ? UNP P02836 ? ? 'cloning artifact' -1 8 2 2HOT VAL B 48 ? UNP P02836 ILE 498 'engineered mutation' 45 9 2 2HOT GLY B 50 ? UNP P02836 ILE 500 'engineered mutation' 47 10 2 2HOT LYS B 53 ? UNP P02836 GLN 503 'engineered mutation' 50 11 2 2HOT MET B 55 ? UNP P02836 LYS 505 'engineered mutation' 52 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P2O non-polymer . 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE '1-(PROP-2-YNYL)-OXAZOLIDINE-2-ONE' 'C6 H7 N O2' 125.125 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HOT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.27 _exptl_crystal.density_percent_sol 62.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details 'PEG-400/NH4OAc, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 PEG400 ? ? ? 1 2 1 NH4OAc ? ? ? 1 3 1 H2O ? ? ? 1 4 2 NH4OAc ? ? ? 1 5 2 bis-Tris-Propane ? ? ? 1 6 2 PEG400 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-07-25 _diffrn_detector.details 'KOHZU:Double Crystal Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11588 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11588 # _reflns.entry_id 2HOT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.190 _reflns.number_obs 18302 _reflns.number_all ? _reflns.percent_possible_obs 95.200 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.000 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.19 2.27 76.30 0.293 ? ? 2.40 ? ? ? ? ? ? 1 1 2.27 2.36 85.80 0.288 ? ? 2.70 ? ? ? ? ? ? 2 1 2.36 2.47 93.30 0.251 ? ? 2.80 ? ? ? ? ? ? 3 1 2.47 2.60 98.80 0.211 ? ? 3.00 ? ? ? ? ? ? 4 1 2.60 2.76 100.00 0.143 ? ? 3.10 ? ? ? ? ? ? 5 1 2.76 2.97 100.00 0.094 ? ? 3.10 ? ? ? ? ? ? 6 1 2.97 3.27 99.90 0.052 ? ? 3.10 ? ? ? ? ? ? 7 1 3.27 3.74 99.80 0.032 ? ? 3.10 ? ? ? ? ? ? 8 1 3.74 4.72 99.60 0.023 ? ? 3.10 ? ? ? ? ? ? 9 1 4.72 50.00 98.40 0.022 ? ? 3.00 ? ? ? ? ? ? 10 1 # _refine.entry_id 2HOT _refine.ls_number_reflns_obs 15927 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.88 _refine.ls_d_res_high 2.19 _refine.ls_percent_reflns_obs 89.09 _refine.ls_R_factor_obs 0.22424 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22206 _refine.ls_R_factor_R_free 0.25448 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.9 _refine.ls_number_reflns_R_free 1183 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .935 _refine.correlation_coeff_Fo_to_Fc_free .920 _refine.B_iso_mean 38.424 _refine.aniso_B[1][1] -1.08 _refine.aniso_B[2][2] .33 _refine.aniso_B[3][3] .73 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] -.01 _refine.aniso_B[2][3] .00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .246 _refine.pdbx_overall_ESU_R_Free .205 _refine.overall_SU_ML .134 _refine.overall_SU_B 9.875 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 938 _refine_hist.pdbx_number_atoms_nucleic_acid 854 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1893 _refine_hist.d_res_high 2.19 _refine_hist.d_res_low 34.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .010 .021 ? 1926 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.660 2.518 ? 2756 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.870 5.000 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.250 22.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.987 15.000 ? 197 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.408 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr .078 .200 ? 295 'X-RAY DIFFRACTION' ? r_gen_planes_refined .005 .020 ? 1163 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .180 .200 ? 601 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .296 .200 ? 1185 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .167 .200 ? 110 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .205 .200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .149 .200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it .632 1.500 ? 585 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.032 2.000 ? 895 'X-RAY DIFFRACTION' ? r_scbond_it 1.512 3.000 ? 1817 'X-RAY DIFFRACTION' ? r_scangle_it 2.440 4.500 ? 1861 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.190 _refine_ls_shell.d_res_low 2.247 _refine_ls_shell.number_reflns_R_work 832 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 62.92 _refine_ls_shell.R_factor_R_free 0.4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HOT _struct.title 'Phage selected homeodomain bound to modified DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOT _struct_keywords.pdbx_keywords transcription/DNA _struct_keywords.text 'Homeodomain, Phage display, transcription-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 12 ? ASN C 26 ? SER A 9 ASN A 23 1 ? 15 HELX_P HELX_P2 2 THR C 30 ? GLY C 42 ? THR A 27 GLY A 39 1 ? 13 HELX_P HELX_P3 3 ASN C 44 ? THR C 63 ? ASN A 41 THR A 60 1 ? 20 HELX_P HELX_P4 4 SER D 12 ? ASN D 24 ? SER B 9 ASN B 21 1 ? 13 HELX_P HELX_P5 5 THR D 30 ? GLY D 42 ? THR B 27 GLY B 39 1 ? 13 HELX_P HELX_P6 6 ASN D 44 ? SER D 62 ? ASN B 41 SER B 59 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 14 C5 ? ? ? 1_555 E P2O . C7 ? ? C DT 14 C P2O 22 1_555 ? ? ? ? ? ? ? 1.451 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 3 N3 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 3 O2 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 3 N4 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C P2O 22 ? 6 'BINDING SITE FOR RESIDUE P2O C 22' AC2 Software B GOL 201 ? 4 'BINDING SITE FOR RESIDUE GOL B 201' AC3 Software B GOL 202 ? 7 'BINDING SITE FOR RESIDUE GOL B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ALA C 46 ? ALA A 43 . ? 1_555 ? 2 AC1 6 LYS C 49 ? LYS A 46 . ? 1_555 ? 3 AC1 6 GLY C 50 ? GLY A 47 . ? 1_555 ? 4 AC1 6 LYS C 53 ? LYS A 50 . ? 1_555 ? 5 AC1 6 DA A 13 ? DA C 13 . ? 1_555 ? 6 AC1 6 DT A 14 ? DT C 14 . ? 1_555 ? 7 AC2 4 PHE D 23 ? PHE B 20 . ? 4_547 ? 8 AC2 4 ASN D 24 ? ASN B 21 . ? 4_547 ? 9 AC2 4 ARG D 27 ? ARG B 24 . ? 4_547 ? 10 AC2 4 ASN D 44 ? ASN B 41 . ? 1_555 ? 11 AC3 7 SER D 12 ? SER B 9 . ? 1_555 ? 12 AC3 7 GLU D 14 ? GLU B 11 . ? 1_555 ? 13 AC3 7 GLN D 15 ? GLN B 12 . ? 1_555 ? 14 AC3 7 TYR D 28 ? TYR B 25 . ? 4_547 ? 15 AC3 7 HOH K . ? HOH B 219 . ? 1_555 ? 16 AC3 7 DC A 18 ? DC C 18 . ? 4_547 ? 17 AC3 7 HOH H . ? HOH C 23 . ? 4_547 ? # _atom_sites.entry_id 2HOT _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004273 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022200 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015489 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DT 3 3 3 DT T C . n A 1 4 DT 4 4 4 DT T C . n A 1 5 DG 5 5 5 DG G C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DC 7 7 7 DC C C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DT 9 9 9 DT T C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DT 11 11 11 DT T C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DC 15 15 15 DC C C . n A 1 16 DC 16 16 16 DC C C . n A 1 17 DC 17 17 17 DC C C . n A 1 18 DC 18 18 18 DC C C . n A 1 19 DG 19 19 19 DG G C . n A 1 20 DG 20 20 20 DG G C . n A 1 21 DA 21 21 21 DA A C . n B 2 1 DA 1 22 22 DA A D . n B 2 2 DT 2 23 23 DT T D . n B 2 3 DC 3 24 24 DC C D . n B 2 4 DC 4 25 25 DC C D . n B 2 5 DG 5 26 26 DG G D . n B 2 6 DG 6 27 27 DG G D . n B 2 7 DG 7 28 28 DG G D . n B 2 8 DG 8 29 29 DG G D . n B 2 9 DA 9 30 30 DA A D . n B 2 10 DT 10 31 31 DT T D . n B 2 11 DT 11 32 32 DT T D . n B 2 12 DA 12 33 33 DA A D . n B 2 13 DC 13 34 34 DC C D . n B 2 14 DA 14 35 35 DA A D . n B 2 15 DT 15 36 36 DT T D . n B 2 16 DG 16 37 37 DG G D . n B 2 17 DG 17 38 38 DG G D . n B 2 18 DC 18 39 39 DC C D . n B 2 19 DA 19 40 40 DA A D . n B 2 20 DA 20 41 41 DA A D . n B 2 21 DA 21 42 42 DA A D . n C 3 1 GLY 1 -2 ? ? ? A . n C 3 2 SER 2 -1 ? ? ? A . n C 3 3 ASP 3 0 ? ? ? A . n C 3 4 GLU 4 1 ? ? ? A . n C 3 5 LYS 5 2 ? ? ? A . n C 3 6 ARG 6 3 ? ? ? A . n C 3 7 PRO 7 4 ? ? ? A . n C 3 8 ARG 8 5 5 ARG ARG A . n C 3 9 THR 9 6 6 THR THR A . n C 3 10 ALA 10 7 7 ALA ALA A . n C 3 11 PHE 11 8 8 PHE PHE A . n C 3 12 SER 12 9 9 SER SER A . n C 3 13 SER 13 10 10 SER SER A . n C 3 14 GLU 14 11 11 GLU GLU A . n C 3 15 GLN 15 12 12 GLN GLN A . n C 3 16 LEU 16 13 13 LEU LEU A . n C 3 17 ALA 17 14 14 ALA ALA A . n C 3 18 ARG 18 15 15 ARG ARG A . n C 3 19 LEU 19 16 16 LEU LEU A . n C 3 20 LYS 20 17 17 LYS LYS A . n C 3 21 ARG 21 18 18 ARG ARG A . n C 3 22 GLU 22 19 19 GLU GLU A . n C 3 23 PHE 23 20 20 PHE PHE A . n C 3 24 ASN 24 21 21 ASN ASN A . n C 3 25 GLU 25 22 22 GLU GLU A . n C 3 26 ASN 26 23 23 ASN ASN A . n C 3 27 ARG 27 24 24 ARG ARG A . n C 3 28 TYR 28 25 25 TYR TYR A . n C 3 29 LEU 29 26 26 LEU LEU A . n C 3 30 THR 30 27 27 THR THR A . n C 3 31 GLU 31 28 28 GLU GLU A . n C 3 32 ARG 32 29 29 ARG ARG A . n C 3 33 ARG 33 30 30 ARG ARG A . n C 3 34 ARG 34 31 31 ARG ARG A . n C 3 35 GLN 35 32 32 GLN GLN A . n C 3 36 GLN 36 33 33 GLN GLN A . n C 3 37 LEU 37 34 34 LEU LEU A . n C 3 38 SER 38 35 35 SER SER A . n C 3 39 SER 39 36 36 SER SER A . n C 3 40 GLU 40 37 37 GLU GLU A . n C 3 41 LEU 41 38 38 LEU LEU A . n C 3 42 GLY 42 39 39 GLY GLY A . n C 3 43 LEU 43 40 40 LEU LEU A . n C 3 44 ASN 44 41 41 ASN ASN A . n C 3 45 GLU 45 42 42 GLU GLU A . n C 3 46 ALA 46 43 43 ALA ALA A . n C 3 47 GLN 47 44 44 GLN GLN A . n C 3 48 VAL 48 45 45 VAL VAL A . n C 3 49 LYS 49 46 46 LYS LYS A . n C 3 50 GLY 50 47 47 GLY GLY A . n C 3 51 TRP 51 48 48 TRP TRP A . n C 3 52 PHE 52 49 49 PHE PHE A . n C 3 53 LYS 53 50 50 LYS LYS A . n C 3 54 ASN 54 51 51 ASN ASN A . n C 3 55 MET 55 52 52 MET MET A . n C 3 56 ARG 56 53 53 ARG ARG A . n C 3 57 ALA 57 54 54 ALA ALA A . n C 3 58 LYS 58 55 55 LYS LYS A . n C 3 59 ILE 59 56 56 ILE ILE A . n C 3 60 LYS 60 57 57 LYS LYS A . n C 3 61 LYS 61 58 58 LYS LYS A . n C 3 62 SER 62 59 59 SER SER A . n C 3 63 THR 63 60 60 THR THR A . n D 3 1 GLY 1 -2 ? ? ? B . n D 3 2 SER 2 -1 ? ? ? B . n D 3 3 ASP 3 0 ? ? ? B . n D 3 4 GLU 4 1 ? ? ? B . n D 3 5 LYS 5 2 2 LYS LYS B . n D 3 6 ARG 6 3 3 ARG ARG B . n D 3 7 PRO 7 4 4 PRO PRO B . n D 3 8 ARG 8 5 5 ARG ARG B . n D 3 9 THR 9 6 6 THR THR B . n D 3 10 ALA 10 7 7 ALA ALA B . n D 3 11 PHE 11 8 8 PHE PHE B . n D 3 12 SER 12 9 9 SER SER B . n D 3 13 SER 13 10 10 SER SER B . n D 3 14 GLU 14 11 11 GLU GLU B . n D 3 15 GLN 15 12 12 GLN GLN B . n D 3 16 LEU 16 13 13 LEU LEU B . n D 3 17 ALA 17 14 14 ALA ALA B . n D 3 18 ARG 18 15 15 ARG ARG B . n D 3 19 LEU 19 16 16 LEU LEU B . n D 3 20 LYS 20 17 17 LYS LYS B . n D 3 21 ARG 21 18 18 ARG ARG B . n D 3 22 GLU 22 19 19 GLU GLU B . n D 3 23 PHE 23 20 20 PHE PHE B . n D 3 24 ASN 24 21 21 ASN ASN B . n D 3 25 GLU 25 22 22 GLU GLU B . n D 3 26 ASN 26 23 23 ASN ASN B . n D 3 27 ARG 27 24 24 ARG ARG B . n D 3 28 TYR 28 25 25 TYR TYR B . n D 3 29 LEU 29 26 26 LEU LEU B . n D 3 30 THR 30 27 27 THR THR B . n D 3 31 GLU 31 28 28 GLU GLU B . n D 3 32 ARG 32 29 29 ARG ARG B . n D 3 33 ARG 33 30 30 ARG ARG B . n D 3 34 ARG 34 31 31 ARG ARG B . n D 3 35 GLN 35 32 32 GLN GLN B . n D 3 36 GLN 36 33 33 GLN GLN B . n D 3 37 LEU 37 34 34 LEU LEU B . n D 3 38 SER 38 35 35 SER SER B . n D 3 39 SER 39 36 36 SER SER B . n D 3 40 GLU 40 37 37 GLU GLU B . n D 3 41 LEU 41 38 38 LEU LEU B . n D 3 42 GLY 42 39 39 GLY GLY B . n D 3 43 LEU 43 40 40 LEU LEU B . n D 3 44 ASN 44 41 41 ASN ASN B . n D 3 45 GLU 45 42 42 GLU GLU B . n D 3 46 ALA 46 43 43 ALA ALA B . n D 3 47 GLN 47 44 44 GLN GLN B . n D 3 48 VAL 48 45 45 VAL VAL B . n D 3 49 LYS 49 46 46 LYS LYS B . n D 3 50 GLY 50 47 47 GLY GLY B . n D 3 51 TRP 51 48 48 TRP TRP B . n D 3 52 PHE 52 49 49 PHE PHE B . n D 3 53 LYS 53 50 50 LYS LYS B . n D 3 54 ASN 54 51 51 ASN ASN B . n D 3 55 MET 55 52 52 MET MET B . n D 3 56 ARG 56 53 53 ARG ARG B . n D 3 57 ALA 57 54 54 ALA ALA B . n D 3 58 LYS 58 55 55 LYS LYS B . n D 3 59 ILE 59 56 56 ILE ILE B . n D 3 60 LYS 60 57 57 LYS LYS B . n D 3 61 LYS 61 58 58 LYS LYS B . n D 3 62 SER 62 59 59 SER SER B . n D 3 63 THR 63 60 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 P2O 1 22 22 P2O P2O C . F 5 GOL 1 201 201 GOL GOL B . G 5 GOL 1 202 202 GOL GOL B . H 6 HOH 1 23 1 HOH HOH C . H 6 HOH 2 24 9 HOH HOH C . H 6 HOH 3 25 21 HOH HOH C . H 6 HOH 4 26 23 HOH HOH C . H 6 HOH 5 27 26 HOH HOH C . H 6 HOH 6 28 28 HOH HOH C . H 6 HOH 7 29 32 HOH HOH C . H 6 HOH 8 30 33 HOH HOH C . H 6 HOH 9 31 39 HOH HOH C . H 6 HOH 10 32 46 HOH HOH C . H 6 HOH 11 33 49 HOH HOH C . H 6 HOH 12 34 51 HOH HOH C . H 6 HOH 13 35 52 HOH HOH C . H 6 HOH 14 36 54 HOH HOH C . H 6 HOH 15 37 55 HOH HOH C . H 6 HOH 16 38 57 HOH HOH C . H 6 HOH 17 39 60 HOH HOH C . H 6 HOH 18 40 61 HOH HOH C . H 6 HOH 19 41 66 HOH HOH C . H 6 HOH 20 42 69 HOH HOH C . H 6 HOH 21 43 71 HOH HOH C . H 6 HOH 22 44 73 HOH HOH C . H 6 HOH 23 45 79 HOH HOH C . I 6 HOH 1 43 4 HOH HOH D . I 6 HOH 2 44 8 HOH HOH D . I 6 HOH 3 45 10 HOH HOH D . I 6 HOH 4 46 11 HOH HOH D . I 6 HOH 5 47 12 HOH HOH D . I 6 HOH 6 48 14 HOH HOH D . I 6 HOH 7 49 17 HOH HOH D . I 6 HOH 8 50 20 HOH HOH D . I 6 HOH 9 51 24 HOH HOH D . I 6 HOH 10 52 30 HOH HOH D . I 6 HOH 11 53 36 HOH HOH D . I 6 HOH 12 54 37 HOH HOH D . I 6 HOH 13 55 38 HOH HOH D . I 6 HOH 14 56 40 HOH HOH D . I 6 HOH 15 57 47 HOH HOH D . I 6 HOH 16 58 64 HOH HOH D . I 6 HOH 17 59 68 HOH HOH D . I 6 HOH 18 60 70 HOH HOH D . I 6 HOH 19 61 72 HOH HOH D . I 6 HOH 20 62 75 HOH HOH D . I 6 HOH 21 63 77 HOH HOH D . I 6 HOH 22 64 80 HOH HOH D . J 6 HOH 1 61 2 HOH HOH A . J 6 HOH 2 62 3 HOH HOH A . J 6 HOH 3 63 5 HOH HOH A . J 6 HOH 4 64 6 HOH HOH A . J 6 HOH 5 65 25 HOH HOH A . J 6 HOH 6 66 27 HOH HOH A . J 6 HOH 7 67 29 HOH HOH A . J 6 HOH 8 68 35 HOH HOH A . J 6 HOH 9 69 41 HOH HOH A . J 6 HOH 10 70 42 HOH HOH A . J 6 HOH 11 71 48 HOH HOH A . J 6 HOH 12 72 56 HOH HOH A . J 6 HOH 13 73 59 HOH HOH A . J 6 HOH 14 74 62 HOH HOH A . J 6 HOH 15 75 63 HOH HOH A . J 6 HOH 16 76 78 HOH HOH A . K 6 HOH 1 203 7 HOH HOH B . K 6 HOH 2 204 13 HOH HOH B . K 6 HOH 3 205 15 HOH HOH B . K 6 HOH 4 206 16 HOH HOH B . K 6 HOH 5 207 18 HOH HOH B . K 6 HOH 6 208 19 HOH HOH B . K 6 HOH 7 209 22 HOH HOH B . K 6 HOH 8 210 31 HOH HOH B . K 6 HOH 9 211 34 HOH HOH B . K 6 HOH 10 212 43 HOH HOH B . K 6 HOH 11 213 44 HOH HOH B . K 6 HOH 12 214 45 HOH HOH B . K 6 HOH 13 215 50 HOH HOH B . K 6 HOH 14 216 53 HOH HOH B . K 6 HOH 15 217 58 HOH HOH B . K 6 HOH 16 218 65 HOH HOH B . K 6 HOH 17 219 67 HOH HOH B . K 6 HOH 18 220 74 HOH HOH B . K 6 HOH 19 221 76 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.1870 29.3670 33.0710 .0214 -.1818 -.2091 -.0269 .1143 .0115 2.6828 12.3002 5.5397 -.6772 -.2233 1.7250 .0198 .0077 -.0476 -.7935 -.0620 -.7270 -.0140 .2685 .0422 'X-RAY DIFFRACTION' 2 ? refined -4.0500 20.2410 62.3060 -.1070 -.2200 -.2351 -.0255 .0476 -.0075 3.2291 9.7122 3.0486 -.7342 -1.6442 -.8750 -.1014 -.0168 -.0182 .1202 .0717 .1865 .0554 -.0798 .0297 'X-RAY DIFFRACTION' 3 ? refined 25.0810 28.3670 48.0200 .0351 .3027 .1206 -.1352 -.0793 .0454 10.0942 .3092 .0438 1.7600 -.5841 -.0971 -.3632 -.1037 -.5070 -.0403 .2098 -.3674 -.0539 .2261 .1534 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 C 8 A 60 C 63 ? 'X-RAY DIFFRACTION' ? 2 2 B 2 D 5 B 59 D 62 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 A 1 C 21 A 21 ? 'X-RAY DIFFRACTION' ? 4 3 D 22 B 1 D 42 B 21 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 1 ? ? "C1'" C DT 1 ? ? N1 C DT 1 ? ? 112.91 108.30 4.61 0.30 N 2 1 "O4'" C DT 3 ? ? "C1'" C DT 3 ? ? N1 C DT 3 ? ? 112.09 108.30 3.79 0.30 N 3 1 "C1'" C DT 4 ? ? "O4'" C DT 4 ? ? "C4'" C DT 4 ? ? 103.55 110.10 -6.55 1.00 N 4 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 111.94 108.30 3.64 0.30 N 5 1 "C3'" C DC 6 ? ? "O3'" C DC 6 ? ? P C DC 7 ? ? 127.87 119.70 8.17 1.20 Y 6 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 112.31 108.30 4.01 0.30 N 7 1 "C3'" C DT 11 ? ? "C2'" C DT 11 ? ? "C1'" C DT 11 ? ? 96.94 102.40 -5.46 0.80 N 8 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 112.26 108.30 3.96 0.30 N 9 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.14 108.30 1.84 0.30 N 10 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 113.05 108.30 4.75 0.30 N 11 1 "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? 101.47 104.50 -3.03 0.40 N 12 1 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.05 108.30 2.75 0.30 N 13 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 110.12 108.30 1.82 0.30 N 14 1 "O4'" C DA 21 ? ? "C1'" C DA 21 ? ? N9 C DA 21 ? ? 113.25 108.30 4.95 0.30 N 15 1 "O4'" D DA 22 ? ? "C1'" D DA 22 ? ? N9 D DA 22 ? ? 112.69 108.30 4.39 0.30 N 16 1 "O4'" D DT 23 ? ? "C1'" D DT 23 ? ? N1 D DT 23 ? ? 110.58 108.30 2.28 0.30 N 17 1 "O4'" D DC 24 ? ? "C1'" D DC 24 ? ? N1 D DC 24 ? ? 112.48 108.30 4.18 0.30 N 18 1 "O4'" D DG 26 ? ? "C1'" D DG 26 ? ? N9 D DG 26 ? ? 112.63 108.30 4.33 0.30 N 19 1 "O4'" D DG 27 ? ? "C1'" D DG 27 ? ? N9 D DG 27 ? ? 113.38 108.30 5.08 0.30 N 20 1 "O4'" D DG 29 ? ? "C1'" D DG 29 ? ? N9 D DG 29 ? ? 110.92 108.30 2.62 0.30 N 21 1 "O4'" D DT 31 ? ? "C1'" D DT 31 ? ? N1 D DT 31 ? ? 110.41 108.30 2.11 0.30 N 22 1 "O4'" D DC 34 ? ? "C1'" D DC 34 ? ? N1 D DC 34 ? ? 112.87 108.30 4.57 0.30 N 23 1 "O4'" D DT 36 ? ? "C1'" D DT 36 ? ? N1 D DT 36 ? ? 111.80 108.30 3.50 0.30 N 24 1 "C3'" D DC 39 ? ? "C2'" D DC 39 ? ? "C1'" D DC 39 ? ? 96.67 102.40 -5.73 0.80 N 25 1 "O4'" D DC 39 ? ? "C1'" D DC 39 ? ? N1 D DC 39 ? ? 111.96 108.30 3.66 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 11 ? CD ? C GLU 14 CD 2 1 Y 1 A GLU 11 ? OE1 ? C GLU 14 OE1 3 1 Y 1 A GLU 11 ? OE2 ? C GLU 14 OE2 4 1 Y 1 A GLU 22 ? CD ? C GLU 25 CD 5 1 Y 1 A GLU 22 ? OE1 ? C GLU 25 OE1 6 1 Y 1 A GLU 22 ? OE2 ? C GLU 25 OE2 7 1 Y 1 A ARG 29 ? CD ? C ARG 32 CD 8 1 Y 1 A ARG 29 ? NE ? C ARG 32 NE 9 1 Y 1 A ARG 29 ? CZ ? C ARG 32 CZ 10 1 Y 1 A ARG 29 ? NH1 ? C ARG 32 NH1 11 1 Y 1 A ARG 29 ? NH2 ? C ARG 32 NH2 12 1 Y 1 A LYS 57 ? CD ? C LYS 60 CD 13 1 Y 1 A LYS 57 ? CE ? C LYS 60 CE 14 1 Y 1 A LYS 57 ? NZ ? C LYS 60 NZ 15 1 Y 1 A LYS 58 ? CD ? C LYS 61 CD 16 1 Y 1 A LYS 58 ? CE ? C LYS 61 CE 17 1 Y 1 A LYS 58 ? NZ ? C LYS 61 NZ 18 1 Y 1 A THR 60 ? CB ? C THR 63 CB 19 1 Y 1 A THR 60 ? OG1 ? C THR 63 OG1 20 1 Y 1 A THR 60 ? CG2 ? C THR 63 CG2 21 1 Y 1 B GLU 11 ? OE1 ? D GLU 14 OE1 22 1 Y 1 B GLU 11 ? OE2 ? D GLU 14 OE2 23 1 Y 1 B ARG 29 ? CZ ? D ARG 32 CZ 24 1 Y 1 B ARG 29 ? NH1 ? D ARG 32 NH1 25 1 Y 1 B ARG 29 ? NH2 ? D ARG 32 NH2 26 1 Y 1 B LYS 57 ? CG ? D LYS 60 CG 27 1 Y 1 B LYS 57 ? CD ? D LYS 60 CD 28 1 Y 1 B LYS 57 ? CE ? D LYS 60 CE 29 1 Y 1 B LYS 57 ? NZ ? D LYS 60 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? C GLY 1 2 1 Y 1 A SER -1 ? C SER 2 3 1 Y 1 A ASP 0 ? C ASP 3 4 1 Y 1 A GLU 1 ? C GLU 4 5 1 Y 1 A LYS 2 ? C LYS 5 6 1 Y 1 A ARG 3 ? C ARG 6 7 1 Y 1 A PRO 4 ? C PRO 7 8 1 Y 1 B GLY -2 ? D GLY 1 9 1 Y 1 B SER -1 ? D SER 2 10 1 Y 1 B ASP 0 ? D ASP 3 11 1 Y 1 B GLU 1 ? D GLU 4 12 1 Y 1 B THR 60 ? D THR 63 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOT 'double helix' 2HOT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 -0.257 -0.176 0.001 -5.405 -9.605 5.577 1 C_DT2:DA42_D C 2 ? D 42 ? 20 1 1 A DT 3 1_555 B DA 20 1_555 0.053 -0.319 0.168 -0.560 -5.966 1.656 2 C_DT3:DA41_D C 3 ? D 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 0.038 -0.355 -0.201 2.102 -19.506 5.104 3 C_DT4:DA40_D C 4 ? D 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.738 -0.463 -0.266 -12.720 -9.667 -1.728 4 C_DG5:DC39_D C 5 ? D 39 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 -0.009 -0.006 0.179 -6.061 -4.771 -5.502 5 C_DC6:DG38_D C 6 ? D 38 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 0.518 -0.424 -0.025 3.148 -5.295 -0.031 6 C_DC7:DG37_D C 7 ? D 37 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 1.041 -0.287 0.195 -2.353 -12.477 -3.041 7 C_DA8:DT36_D C 8 ? D 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 0.266 -0.280 0.040 -0.374 -10.265 -4.223 8 C_DT9:DA35_D C 9 ? D 35 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.225 -0.204 0.042 -2.473 -7.129 0.720 9 C_DG10:DC34_D C 10 ? D 34 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 0.001 -0.074 -0.112 7.642 -9.036 8.184 10 C_DT11:DA33_D C 11 ? D 33 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 0.325 -0.354 -0.386 0.204 -16.220 2.949 11 C_DA12:DT32_D C 12 ? D 32 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 -0.109 -0.379 0.040 2.608 -15.675 2.817 12 C_DA13:DT31_D C 13 ? D 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.237 -0.290 -0.030 -3.859 -16.867 0.832 13 C_DT14:DA30_D C 14 ? D 30 ? 20 1 1 A DC 15 1_555 B DG 8 1_555 0.300 -0.145 -0.082 -0.925 -8.191 1.936 14 C_DC15:DG29_D C 15 ? D 29 ? 19 1 1 A DC 16 1_555 B DG 7 1_555 0.375 -0.426 -0.105 5.899 -8.368 -1.463 15 C_DC16:DG28_D C 16 ? D 28 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 0.462 -0.439 0.323 0.911 -20.609 -2.480 16 C_DC17:DG27_D C 17 ? D 27 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 -0.226 -0.262 0.055 -9.006 -10.676 -1.504 17 C_DC18:DG26_D C 18 ? D 26 ? 19 1 1 A DG 19 1_555 B DC 4 1_555 0.005 -0.231 -0.090 3.418 -10.463 0.297 18 C_DG19:DC25_D C 19 ? D 25 ? 19 1 1 A DG 20 1_555 B DC 3 1_555 -0.387 -0.311 -0.302 -0.568 -11.427 -0.410 19 C_DG20:DC24_D C 20 ? D 24 ? 19 1 1 A DA 21 1_555 B DT 2 1_555 0.126 -0.174 -0.080 4.770 -18.739 4.276 20 C_DA21:DT23_D C 21 ? D 23 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 1.034 0.977 3.268 1.611 8.121 36.327 0.410 -1.397 3.440 12.822 -2.544 37.227 1 CC_DT2DT3:DA41DA42_DD C 2 ? D 42 ? C 3 ? D 41 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.140 0.130 3.279 1.627 0.675 31.128 0.113 0.572 3.269 1.257 -3.028 31.177 2 CC_DT3DT4:DA40DA41_DD C 3 ? D 41 ? C 4 ? D 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.224 -0.501 3.587 2.281 12.346 35.988 -2.459 -0.031 3.255 19.274 -3.561 38.047 3 CC_DT4DG5:DC39DA40_DD C 4 ? D 40 ? C 5 ? D 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 -0.090 0.022 3.171 -2.243 -1.027 34.887 0.187 -0.179 3.168 -1.710 3.736 34.971 4 CC_DG5DC6:DG38DC39_DD C 5 ? D 39 ? C 6 ? D 38 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 -0.073 0.327 3.169 2.591 -1.421 33.009 0.804 0.548 3.138 -2.495 -4.548 33.137 5 CC_DC6DC7:DG37DG38_DD C 6 ? D 38 ? C 7 ? D 37 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 -0.424 0.700 3.519 -4.236 -2.229 47.840 1.049 0.162 3.508 -2.741 5.209 48.065 6 CC_DC7DA8:DT36DG37_DD C 7 ? D 37 ? C 8 ? D 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 0.041 -0.321 3.245 0.717 -4.463 27.760 0.387 0.083 3.256 -9.225 -1.482 28.118 7 CC_DA8DT9:DA35DT36_DD C 8 ? D 36 ? C 9 ? D 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 0.536 0.451 3.306 1.372 4.845 37.755 0.063 -0.643 3.353 7.447 -2.109 38.077 8 CC_DT9DG10:DC34DA35_DD C 9 ? D 35 ? C 10 ? D 34 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 -0.018 -0.097 3.076 1.008 4.664 25.033 -1.472 0.311 3.006 10.637 -2.300 25.476 9 CC_DG10DT11:DA33DC34_DD C 10 ? D 34 ? C 11 ? D 33 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.838 1.107 3.428 -0.437 5.705 44.077 0.900 1.065 3.545 7.564 0.579 44.429 10 CC_DT11DA12:DT32DA33_DD C 11 ? D 33 ? C 12 ? D 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.388 -0.145 3.214 -3.955 1.976 32.534 -0.586 -1.348 3.132 3.507 7.020 32.825 11 CC_DA12DA13:DT31DT32_DD C 12 ? D 32 ? C 13 ? D 31 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.737 -1.091 3.399 -0.743 1.291 31.916 -2.224 1.200 3.369 2.346 1.350 31.949 12 CC_DA13DT14:DA30DT31_DD C 13 ? D 31 ? C 14 ? D 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DC 15 1_555 B DG 8 1_555 -0.108 -0.421 3.307 -1.635 -1.499 34.842 -0.472 -0.071 3.323 -2.500 2.728 34.910 13 CC_DT14DC15:DG29DA30_DD C 14 ? D 30 ? C 15 ? D 29 ? 1 A DC 15 1_555 B DG 8 1_555 A DC 16 1_555 B DG 7 1_555 0.297 -0.274 3.178 0.038 8.279 31.373 -1.892 -0.526 3.010 14.986 -0.068 32.421 14 CC_DC15DC16:DG28DG29_DD C 15 ? D 29 ? C 16 ? D 28 ? 1 A DC 16 1_555 B DG 7 1_555 A DC 17 1_555 B DG 6 1_555 -0.305 -0.729 3.456 -4.851 4.469 37.036 -1.742 -0.190 3.361 6.968 7.564 37.598 15 CC_DC16DC17:DG27DG28_DD C 16 ? D 28 ? C 17 ? D 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.342 -0.720 3.405 6.440 5.801 32.013 -2.272 0.520 3.235 10.284 -11.419 33.136 16 CC_DC17DC18:DG26DG27_DD C 17 ? D 27 ? C 18 ? D 26 ? 1 A DC 18 1_555 B DG 5 1_555 A DG 19 1_555 B DC 4 1_555 -0.004 0.270 3.196 3.242 11.592 32.123 -1.355 0.514 3.092 20.089 -5.618 34.248 17 CC_DC18DG19:DC25DG26_DD C 18 ? D 26 ? C 19 ? D 25 ? 1 A DG 19 1_555 B DC 4 1_555 A DG 20 1_555 B DC 3 1_555 0.133 -0.534 3.476 1.180 6.181 30.585 -2.224 -0.012 3.309 11.565 -2.209 31.211 18 CC_DG19DG20:DC24DC25_DD C 19 ? D 25 ? C 20 ? D 24 ? 1 A DG 20 1_555 B DC 3 1_555 A DA 21 1_555 B DT 2 1_555 0.265 -0.136 3.165 -0.986 6.113 32.663 -1.222 -0.623 3.081 10.749 1.733 33.229 19 CC_DG20DA21:DT23DC24_DD C 20 ? D 24 ? C 21 ? D 23 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE P2O 5 GLYCEROL GOL 6 water HOH #