data_2HOT # _entry.id 2HOT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOT pdb_00002hot 10.2210/pdb2hot/pdb NDB PD0841 ? ? RCSB RCSB038589 ? ? WWPDB D_1000038589 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2HOT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HDD 'Engrailed Homeodomain Q50K mutant bound to the same DNA but unmodified' unspecified PDB 2HOS . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feldman, M.E.' 1 'Simon, M.D.' 2 'Shokat, K.M.' 3 # _citation.id primary _citation.title 'Structure and properties of a re-engineered homeodomain protein-DNA interface.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 1 _citation.page_first 755 _citation.page_last 760 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17240973 _citation.pdbx_database_id_DOI 10.1021/cb6003756 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simon, M.D.' 1 ? primary 'Feldman, M.E.' 2 ? primary 'Rauh, D.' 3 ? primary 'Maris, A.E.' 4 ? primary 'Wemmer, D.E.' 5 ? primary 'Shokat, K.M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3'" 6389.133 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3'" 6496.224 1 ? ? ? ? 3 polymer man 'Segmentation polarity homeobox protein engrailed' 7516.522 2 ? I45V,I47G,Q50K,K52M 'Engrailed homeodomain' ? 4 non-polymer syn 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE 125.125 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name Homeobox # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DG)(DG) (DA) ; TTTTGCCATGTAATCCCCGGA C ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DC)(DC)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATCCGGGGATTACATGGCAAA D ? 3 'polypeptide(L)' no no GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST A,B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE P2O 5 GLYCEROL GOL 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DC n 1 18 DC n 1 19 DG n 1 20 DG n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DG n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 GLY n 3 2 SER n 3 3 ASP n 3 4 GLU n 3 5 LYS n 3 6 ARG n 3 7 PRO n 3 8 ARG n 3 9 THR n 3 10 ALA n 3 11 PHE n 3 12 SER n 3 13 SER n 3 14 GLU n 3 15 GLN n 3 16 LEU n 3 17 ALA n 3 18 ARG n 3 19 LEU n 3 20 LYS n 3 21 ARG n 3 22 GLU n 3 23 PHE n 3 24 ASN n 3 25 GLU n 3 26 ASN n 3 27 ARG n 3 28 TYR n 3 29 LEU n 3 30 THR n 3 31 GLU n 3 32 ARG n 3 33 ARG n 3 34 ARG n 3 35 GLN n 3 36 GLN n 3 37 LEU n 3 38 SER n 3 39 SER n 3 40 GLU n 3 41 LEU n 3 42 GLY n 3 43 LEU n 3 44 ASN n 3 45 GLU n 3 46 ALA n 3 47 GLN n 3 48 VAL n 3 49 LYS n 3 50 GLY n 3 51 TRP n 3 52 PHE n 3 53 LYS n 3 54 ASN n 3 55 MET n 3 56 ARG n 3 57 ALA n 3 58 LYS n 3 59 ILE n 3 60 LYS n 3 61 LYS n 3 62 SER n 3 63 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene En _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pMal-c2 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMal-EnHDf _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Solid-phase DNA synthesis' 2 1 sample ? ? ? ? ? 'Commercial solid-phase DNA synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P2O non-polymer . 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE '1-(PROP-2-YNYL)-OXAZOLIDINE-2-ONE' 'C6 H7 N O2' 125.125 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DT 3 3 3 DT T C . n A 1 4 DT 4 4 4 DT T C . n A 1 5 DG 5 5 5 DG G C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DC 7 7 7 DC C C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DT 9 9 9 DT T C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DT 11 11 11 DT T C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DC 15 15 15 DC C C . n A 1 16 DC 16 16 16 DC C C . n A 1 17 DC 17 17 17 DC C C . n A 1 18 DC 18 18 18 DC C C . n A 1 19 DG 19 19 19 DG G C . n A 1 20 DG 20 20 20 DG G C . n A 1 21 DA 21 21 21 DA A C . n B 2 1 DA 1 22 22 DA A D . n B 2 2 DT 2 23 23 DT T D . n B 2 3 DC 3 24 24 DC C D . n B 2 4 DC 4 25 25 DC C D . n B 2 5 DG 5 26 26 DG G D . n B 2 6 DG 6 27 27 DG G D . n B 2 7 DG 7 28 28 DG G D . n B 2 8 DG 8 29 29 DG G D . n B 2 9 DA 9 30 30 DA A D . n B 2 10 DT 10 31 31 DT T D . n B 2 11 DT 11 32 32 DT T D . n B 2 12 DA 12 33 33 DA A D . n B 2 13 DC 13 34 34 DC C D . n B 2 14 DA 14 35 35 DA A D . n B 2 15 DT 15 36 36 DT T D . n B 2 16 DG 16 37 37 DG G D . n B 2 17 DG 17 38 38 DG G D . n B 2 18 DC 18 39 39 DC C D . n B 2 19 DA 19 40 40 DA A D . n B 2 20 DA 20 41 41 DA A D . n B 2 21 DA 21 42 42 DA A D . n C 3 1 GLY 1 -2 ? ? ? A . n C 3 2 SER 2 -1 ? ? ? A . n C 3 3 ASP 3 0 ? ? ? A . n C 3 4 GLU 4 1 ? ? ? A . n C 3 5 LYS 5 2 ? ? ? A . n C 3 6 ARG 6 3 ? ? ? A . n C 3 7 PRO 7 4 ? ? ? A . n C 3 8 ARG 8 5 5 ARG ARG A . n C 3 9 THR 9 6 6 THR THR A . n C 3 10 ALA 10 7 7 ALA ALA A . n C 3 11 PHE 11 8 8 PHE PHE A . n C 3 12 SER 12 9 9 SER SER A . n C 3 13 SER 13 10 10 SER SER A . n C 3 14 GLU 14 11 11 GLU GLU A . n C 3 15 GLN 15 12 12 GLN GLN A . n C 3 16 LEU 16 13 13 LEU LEU A . n C 3 17 ALA 17 14 14 ALA ALA A . n C 3 18 ARG 18 15 15 ARG ARG A . n C 3 19 LEU 19 16 16 LEU LEU A . n C 3 20 LYS 20 17 17 LYS LYS A . n C 3 21 ARG 21 18 18 ARG ARG A . n C 3 22 GLU 22 19 19 GLU GLU A . n C 3 23 PHE 23 20 20 PHE PHE A . n C 3 24 ASN 24 21 21 ASN ASN A . n C 3 25 GLU 25 22 22 GLU GLU A . n C 3 26 ASN 26 23 23 ASN ASN A . n C 3 27 ARG 27 24 24 ARG ARG A . n C 3 28 TYR 28 25 25 TYR TYR A . n C 3 29 LEU 29 26 26 LEU LEU A . n C 3 30 THR 30 27 27 THR THR A . n C 3 31 GLU 31 28 28 GLU GLU A . n C 3 32 ARG 32 29 29 ARG ARG A . n C 3 33 ARG 33 30 30 ARG ARG A . n C 3 34 ARG 34 31 31 ARG ARG A . n C 3 35 GLN 35 32 32 GLN GLN A . n C 3 36 GLN 36 33 33 GLN GLN A . n C 3 37 LEU 37 34 34 LEU LEU A . n C 3 38 SER 38 35 35 SER SER A . n C 3 39 SER 39 36 36 SER SER A . n C 3 40 GLU 40 37 37 GLU GLU A . n C 3 41 LEU 41 38 38 LEU LEU A . n C 3 42 GLY 42 39 39 GLY GLY A . n C 3 43 LEU 43 40 40 LEU LEU A . n C 3 44 ASN 44 41 41 ASN ASN A . n C 3 45 GLU 45 42 42 GLU GLU A . n C 3 46 ALA 46 43 43 ALA ALA A . n C 3 47 GLN 47 44 44 GLN GLN A . n C 3 48 VAL 48 45 45 VAL VAL A . n C 3 49 LYS 49 46 46 LYS LYS A . n C 3 50 GLY 50 47 47 GLY GLY A . n C 3 51 TRP 51 48 48 TRP TRP A . n C 3 52 PHE 52 49 49 PHE PHE A . n C 3 53 LYS 53 50 50 LYS LYS A . n C 3 54 ASN 54 51 51 ASN ASN A . n C 3 55 MET 55 52 52 MET MET A . n C 3 56 ARG 56 53 53 ARG ARG A . n C 3 57 ALA 57 54 54 ALA ALA A . n C 3 58 LYS 58 55 55 LYS LYS A . n C 3 59 ILE 59 56 56 ILE ILE A . n C 3 60 LYS 60 57 57 LYS LYS A . n C 3 61 LYS 61 58 58 LYS LYS A . n C 3 62 SER 62 59 59 SER SER A . n C 3 63 THR 63 60 60 THR THR A . n D 3 1 GLY 1 -2 ? ? ? B . n D 3 2 SER 2 -1 ? ? ? B . n D 3 3 ASP 3 0 ? ? ? B . n D 3 4 GLU 4 1 ? ? ? B . n D 3 5 LYS 5 2 2 LYS LYS B . n D 3 6 ARG 6 3 3 ARG ARG B . n D 3 7 PRO 7 4 4 PRO PRO B . n D 3 8 ARG 8 5 5 ARG ARG B . n D 3 9 THR 9 6 6 THR THR B . n D 3 10 ALA 10 7 7 ALA ALA B . n D 3 11 PHE 11 8 8 PHE PHE B . n D 3 12 SER 12 9 9 SER SER B . n D 3 13 SER 13 10 10 SER SER B . n D 3 14 GLU 14 11 11 GLU GLU B . n D 3 15 GLN 15 12 12 GLN GLN B . n D 3 16 LEU 16 13 13 LEU LEU B . n D 3 17 ALA 17 14 14 ALA ALA B . n D 3 18 ARG 18 15 15 ARG ARG B . n D 3 19 LEU 19 16 16 LEU LEU B . n D 3 20 LYS 20 17 17 LYS LYS B . n D 3 21 ARG 21 18 18 ARG ARG B . n D 3 22 GLU 22 19 19 GLU GLU B . n D 3 23 PHE 23 20 20 PHE PHE B . n D 3 24 ASN 24 21 21 ASN ASN B . n D 3 25 GLU 25 22 22 GLU GLU B . n D 3 26 ASN 26 23 23 ASN ASN B . n D 3 27 ARG 27 24 24 ARG ARG B . n D 3 28 TYR 28 25 25 TYR TYR B . n D 3 29 LEU 29 26 26 LEU LEU B . n D 3 30 THR 30 27 27 THR THR B . n D 3 31 GLU 31 28 28 GLU GLU B . n D 3 32 ARG 32 29 29 ARG ARG B . n D 3 33 ARG 33 30 30 ARG ARG B . n D 3 34 ARG 34 31 31 ARG ARG B . n D 3 35 GLN 35 32 32 GLN GLN B . n D 3 36 GLN 36 33 33 GLN GLN B . n D 3 37 LEU 37 34 34 LEU LEU B . n D 3 38 SER 38 35 35 SER SER B . n D 3 39 SER 39 36 36 SER SER B . n D 3 40 GLU 40 37 37 GLU GLU B . n D 3 41 LEU 41 38 38 LEU LEU B . n D 3 42 GLY 42 39 39 GLY GLY B . n D 3 43 LEU 43 40 40 LEU LEU B . n D 3 44 ASN 44 41 41 ASN ASN B . n D 3 45 GLU 45 42 42 GLU GLU B . n D 3 46 ALA 46 43 43 ALA ALA B . n D 3 47 GLN 47 44 44 GLN GLN B . n D 3 48 VAL 48 45 45 VAL VAL B . n D 3 49 LYS 49 46 46 LYS LYS B . n D 3 50 GLY 50 47 47 GLY GLY B . n D 3 51 TRP 51 48 48 TRP TRP B . n D 3 52 PHE 52 49 49 PHE PHE B . n D 3 53 LYS 53 50 50 LYS LYS B . n D 3 54 ASN 54 51 51 ASN ASN B . n D 3 55 MET 55 52 52 MET MET B . n D 3 56 ARG 56 53 53 ARG ARG B . n D 3 57 ALA 57 54 54 ALA ALA B . n D 3 58 LYS 58 55 55 LYS LYS B . n D 3 59 ILE 59 56 56 ILE ILE B . n D 3 60 LYS 60 57 57 LYS LYS B . n D 3 61 LYS 61 58 58 LYS LYS B . n D 3 62 SER 62 59 59 SER SER B . n D 3 63 THR 63 60 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 P2O 1 22 22 P2O P2O C . F 5 GOL 1 201 201 GOL GOL B . G 5 GOL 1 202 202 GOL GOL B . H 6 HOH 1 23 1 HOH HOH C . H 6 HOH 2 24 9 HOH HOH C . H 6 HOH 3 25 21 HOH HOH C . H 6 HOH 4 26 23 HOH HOH C . H 6 HOH 5 27 26 HOH HOH C . H 6 HOH 6 28 28 HOH HOH C . H 6 HOH 7 29 32 HOH HOH C . H 6 HOH 8 30 33 HOH HOH C . H 6 HOH 9 31 39 HOH HOH C . H 6 HOH 10 32 46 HOH HOH C . H 6 HOH 11 33 49 HOH HOH C . H 6 HOH 12 34 51 HOH HOH C . H 6 HOH 13 35 52 HOH HOH C . H 6 HOH 14 36 54 HOH HOH C . H 6 HOH 15 37 55 HOH HOH C . H 6 HOH 16 38 57 HOH HOH C . H 6 HOH 17 39 60 HOH HOH C . H 6 HOH 18 40 61 HOH HOH C . H 6 HOH 19 41 66 HOH HOH C . H 6 HOH 20 42 69 HOH HOH C . H 6 HOH 21 43 71 HOH HOH C . H 6 HOH 22 44 73 HOH HOH C . H 6 HOH 23 45 79 HOH HOH C . I 6 HOH 1 43 4 HOH HOH D . I 6 HOH 2 44 8 HOH HOH D . I 6 HOH 3 45 10 HOH HOH D . I 6 HOH 4 46 11 HOH HOH D . I 6 HOH 5 47 12 HOH HOH D . I 6 HOH 6 48 14 HOH HOH D . I 6 HOH 7 49 17 HOH HOH D . I 6 HOH 8 50 20 HOH HOH D . I 6 HOH 9 51 24 HOH HOH D . I 6 HOH 10 52 30 HOH HOH D . I 6 HOH 11 53 36 HOH HOH D . I 6 HOH 12 54 37 HOH HOH D . I 6 HOH 13 55 38 HOH HOH D . I 6 HOH 14 56 40 HOH HOH D . I 6 HOH 15 57 47 HOH HOH D . I 6 HOH 16 58 64 HOH HOH D . I 6 HOH 17 59 68 HOH HOH D . I 6 HOH 18 60 70 HOH HOH D . I 6 HOH 19 61 72 HOH HOH D . I 6 HOH 20 62 75 HOH HOH D . I 6 HOH 21 63 77 HOH HOH D . I 6 HOH 22 64 80 HOH HOH D . J 6 HOH 1 61 2 HOH HOH A . J 6 HOH 2 62 3 HOH HOH A . J 6 HOH 3 63 5 HOH HOH A . J 6 HOH 4 64 6 HOH HOH A . J 6 HOH 5 65 25 HOH HOH A . J 6 HOH 6 66 27 HOH HOH A . J 6 HOH 7 67 29 HOH HOH A . J 6 HOH 8 68 35 HOH HOH A . J 6 HOH 9 69 41 HOH HOH A . J 6 HOH 10 70 42 HOH HOH A . J 6 HOH 11 71 48 HOH HOH A . J 6 HOH 12 72 56 HOH HOH A . J 6 HOH 13 73 59 HOH HOH A . J 6 HOH 14 74 62 HOH HOH A . J 6 HOH 15 75 63 HOH HOH A . J 6 HOH 16 76 78 HOH HOH A . K 6 HOH 1 203 7 HOH HOH B . K 6 HOH 2 204 13 HOH HOH B . K 6 HOH 3 205 15 HOH HOH B . K 6 HOH 4 206 16 HOH HOH B . K 6 HOH 5 207 18 HOH HOH B . K 6 HOH 6 208 19 HOH HOH B . K 6 HOH 7 209 22 HOH HOH B . K 6 HOH 8 210 31 HOH HOH B . K 6 HOH 9 211 34 HOH HOH B . K 6 HOH 10 212 43 HOH HOH B . K 6 HOH 11 213 44 HOH HOH B . K 6 HOH 12 214 45 HOH HOH B . K 6 HOH 13 215 50 HOH HOH B . K 6 HOH 14 216 53 HOH HOH B . K 6 HOH 15 217 58 HOH HOH B . K 6 HOH 16 218 65 HOH HOH B . K 6 HOH 17 219 67 HOH HOH B . K 6 HOH 18 220 74 HOH HOH B . K 6 HOH 19 221 76 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 11 ? CD ? C GLU 14 CD 2 1 Y 1 A GLU 11 ? OE1 ? C GLU 14 OE1 3 1 Y 1 A GLU 11 ? OE2 ? C GLU 14 OE2 4 1 Y 1 A GLU 22 ? CD ? C GLU 25 CD 5 1 Y 1 A GLU 22 ? OE1 ? C GLU 25 OE1 6 1 Y 1 A GLU 22 ? OE2 ? C GLU 25 OE2 7 1 Y 1 A ARG 29 ? CD ? C ARG 32 CD 8 1 Y 1 A ARG 29 ? NE ? C ARG 32 NE 9 1 Y 1 A ARG 29 ? CZ ? C ARG 32 CZ 10 1 Y 1 A ARG 29 ? NH1 ? C ARG 32 NH1 11 1 Y 1 A ARG 29 ? NH2 ? C ARG 32 NH2 12 1 Y 1 A LYS 57 ? CD ? C LYS 60 CD 13 1 Y 1 A LYS 57 ? CE ? C LYS 60 CE 14 1 Y 1 A LYS 57 ? NZ ? C LYS 60 NZ 15 1 Y 1 A LYS 58 ? CD ? C LYS 61 CD 16 1 Y 1 A LYS 58 ? CE ? C LYS 61 CE 17 1 Y 1 A LYS 58 ? NZ ? C LYS 61 NZ 18 1 Y 1 A THR 60 ? CB ? C THR 63 CB 19 1 Y 1 A THR 60 ? OG1 ? C THR 63 OG1 20 1 Y 1 A THR 60 ? CG2 ? C THR 63 CG2 21 1 Y 1 B GLU 11 ? OE1 ? D GLU 14 OE1 22 1 Y 1 B GLU 11 ? OE2 ? D GLU 14 OE2 23 1 Y 1 B ARG 29 ? CZ ? D ARG 32 CZ 24 1 Y 1 B ARG 29 ? NH1 ? D ARG 32 NH1 25 1 Y 1 B ARG 29 ? NH2 ? D ARG 32 NH2 26 1 Y 1 B LYS 57 ? CG ? D LYS 60 CG 27 1 Y 1 B LYS 57 ? CD ? D LYS 60 CD 28 1 Y 1 B LYS 57 ? CE ? D LYS 60 CE 29 1 Y 1 B LYS 57 ? NZ ? D LYS 60 NZ # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 # _cell.entry_id 2HOT _cell.length_a 127.856 _cell.length_b 45.046 _cell.length_c 73.568 _cell.angle_alpha 90.00 _cell.angle_beta 118.65 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOT _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HOT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.27 _exptl_crystal.density_percent_sol 62.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details 'PEG-400/NH4OAc, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 PEG400 ? ? ? 1 2 1 NH4OAc ? ? ? 1 3 1 H2O ? ? ? 1 4 2 NH4OAc ? ? ? 1 5 2 bis-Tris-Propane ? ? ? 1 6 2 PEG400 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-07-25 _diffrn_detector.details 'KOHZU:Double Crystal Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11588 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11588 # _reflns.entry_id 2HOT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.190 _reflns.number_obs 18302 _reflns.number_all ? _reflns.percent_possible_obs 95.200 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.000 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.19 2.27 76.30 0.293 ? ? 2.40 ? ? ? ? ? ? 1 1 2.27 2.36 85.80 0.288 ? ? 2.70 ? ? ? ? ? ? 2 1 2.36 2.47 93.30 0.251 ? ? 2.80 ? ? ? ? ? ? 3 1 2.47 2.60 98.80 0.211 ? ? 3.00 ? ? ? ? ? ? 4 1 2.60 2.76 100.00 0.143 ? ? 3.10 ? ? ? ? ? ? 5 1 2.76 2.97 100.00 0.094 ? ? 3.10 ? ? ? ? ? ? 6 1 2.97 3.27 99.90 0.052 ? ? 3.10 ? ? ? ? ? ? 7 1 3.27 3.74 99.80 0.032 ? ? 3.10 ? ? ? ? ? ? 8 1 3.74 4.72 99.60 0.023 ? ? 3.10 ? ? ? ? ? ? 9 1 4.72 50.00 98.40 0.022 ? ? 3.00 ? ? ? ? ? ? 10 1 # _refine.entry_id 2HOT _refine.ls_number_reflns_obs 15927 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.88 _refine.ls_d_res_high 2.19 _refine.ls_percent_reflns_obs 89.09 _refine.ls_R_factor_obs 0.22424 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22206 _refine.ls_R_factor_R_free 0.25448 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.9 _refine.ls_number_reflns_R_free 1183 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .935 _refine.correlation_coeff_Fo_to_Fc_free .920 _refine.B_iso_mean 38.424 _refine.aniso_B[1][1] -1.08 _refine.aniso_B[2][2] .33 _refine.aniso_B[3][3] .73 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] -.01 _refine.aniso_B[2][3] .00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .246 _refine.pdbx_overall_ESU_R_Free .205 _refine.overall_SU_ML .134 _refine.overall_SU_B 9.875 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 938 _refine_hist.pdbx_number_atoms_nucleic_acid 854 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1893 _refine_hist.d_res_high 2.19 _refine_hist.d_res_low 34.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .010 .021 ? 1926 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.660 2.518 ? 2756 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.870 5.000 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.250 22.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.987 15.000 ? 197 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.408 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr .078 .200 ? 295 'X-RAY DIFFRACTION' ? r_gen_planes_refined .005 .020 ? 1163 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .180 .200 ? 601 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .296 .200 ? 1185 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .167 .200 ? 110 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .205 .200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .149 .200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it .632 1.500 ? 585 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.032 2.000 ? 895 'X-RAY DIFFRACTION' ? r_scbond_it 1.512 3.000 ? 1817 'X-RAY DIFFRACTION' ? r_scangle_it 2.440 4.500 ? 1861 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.190 _refine_ls_shell.d_res_low 2.247 _refine_ls_shell.number_reflns_R_work 832 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 62.92 _refine_ls_shell.R_factor_R_free 0.4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HOT _struct.title 'Phage selected homeodomain bound to modified DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOT _struct_keywords.pdbx_keywords transcription/DNA _struct_keywords.text 'Homeodomain, Phage display, transcription-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HMEN_DROME P02836 3 453 ? ? 2 PDB 2HOT 2HOT 1 ? ? ? 3 PDB 2HOT 2HOT 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HOT A 3 ? 63 ? P02836 453 ? 513 ? 0 60 2 1 2HOT B 3 ? 63 ? P02836 453 ? 513 ? 0 60 3 2 2HOT C 1 ? 21 ? 2HOT 1 ? 21 ? 1 21 4 3 2HOT D 1 ? 21 ? 2HOT 22 ? 42 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HOT GLY A 1 ? UNP P02836 ? ? 'cloning artifact' -2 1 1 2HOT SER A 2 ? UNP P02836 ? ? 'cloning artifact' -1 2 1 2HOT VAL A 48 ? UNP P02836 ILE 498 'engineered mutation' 45 3 1 2HOT GLY A 50 ? UNP P02836 ILE 500 'engineered mutation' 47 4 1 2HOT LYS A 53 ? UNP P02836 GLN 503 'engineered mutation' 50 5 1 2HOT MET A 55 ? UNP P02836 LYS 505 'engineered mutation' 52 6 2 2HOT GLY B 1 ? UNP P02836 ? ? 'cloning artifact' -2 7 2 2HOT SER B 2 ? UNP P02836 ? ? 'cloning artifact' -1 8 2 2HOT VAL B 48 ? UNP P02836 ILE 498 'engineered mutation' 45 9 2 2HOT GLY B 50 ? UNP P02836 ILE 500 'engineered mutation' 47 10 2 2HOT LYS B 53 ? UNP P02836 GLN 503 'engineered mutation' 50 11 2 2HOT MET B 55 ? UNP P02836 LYS 505 'engineered mutation' 52 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 12 ? ASN C 26 ? SER A 9 ASN A 23 1 ? 15 HELX_P HELX_P2 2 THR C 30 ? GLY C 42 ? THR A 27 GLY A 39 1 ? 13 HELX_P HELX_P3 3 ASN C 44 ? THR C 63 ? ASN A 41 THR A 60 1 ? 20 HELX_P HELX_P4 4 SER D 12 ? ASN D 24 ? SER B 9 ASN B 21 1 ? 13 HELX_P HELX_P5 5 THR D 30 ? GLY D 42 ? THR B 27 GLY B 39 1 ? 13 HELX_P HELX_P6 6 ASN D 44 ? SER D 62 ? ASN B 41 SER B 59 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 14 C5 ? ? ? 1_555 E P2O . C7 ? ? C DT 14 C P2O 22 1_555 ? ? ? ? ? ? ? 1.451 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 3 N3 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 3 O2 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 3 N4 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C P2O 22 ? 6 'BINDING SITE FOR RESIDUE P2O C 22' AC2 Software B GOL 201 ? 4 'BINDING SITE FOR RESIDUE GOL B 201' AC3 Software B GOL 202 ? 7 'BINDING SITE FOR RESIDUE GOL B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ALA C 46 ? ALA A 43 . ? 1_555 ? 2 AC1 6 LYS C 49 ? LYS A 46 . ? 1_555 ? 3 AC1 6 GLY C 50 ? GLY A 47 . ? 1_555 ? 4 AC1 6 LYS C 53 ? LYS A 50 . ? 1_555 ? 5 AC1 6 DA A 13 ? DA C 13 . ? 1_555 ? 6 AC1 6 DT A 14 ? DT C 14 . ? 1_555 ? 7 AC2 4 PHE D 23 ? PHE B 20 . ? 4_547 ? 8 AC2 4 ASN D 24 ? ASN B 21 . ? 4_547 ? 9 AC2 4 ARG D 27 ? ARG B 24 . ? 4_547 ? 10 AC2 4 ASN D 44 ? ASN B 41 . ? 1_555 ? 11 AC3 7 SER D 12 ? SER B 9 . ? 1_555 ? 12 AC3 7 GLU D 14 ? GLU B 11 . ? 1_555 ? 13 AC3 7 GLN D 15 ? GLN B 12 . ? 1_555 ? 14 AC3 7 TYR D 28 ? TYR B 25 . ? 4_547 ? 15 AC3 7 HOH K . ? HOH B 219 . ? 1_555 ? 16 AC3 7 DC A 18 ? DC C 18 . ? 4_547 ? 17 AC3 7 HOH H . ? HOH C 23 . ? 4_547 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 1 ? ? "C1'" C DT 1 ? ? N1 C DT 1 ? ? 112.91 108.30 4.61 0.30 N 2 1 "O4'" C DT 3 ? ? "C1'" C DT 3 ? ? N1 C DT 3 ? ? 112.09 108.30 3.79 0.30 N 3 1 "C1'" C DT 4 ? ? "O4'" C DT 4 ? ? "C4'" C DT 4 ? ? 103.55 110.10 -6.55 1.00 N 4 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 111.94 108.30 3.64 0.30 N 5 1 "C3'" C DC 6 ? ? "O3'" C DC 6 ? ? P C DC 7 ? ? 127.87 119.70 8.17 1.20 Y 6 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 112.31 108.30 4.01 0.30 N 7 1 "C3'" C DT 11 ? ? "C2'" C DT 11 ? ? "C1'" C DT 11 ? ? 96.94 102.40 -5.46 0.80 N 8 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 112.26 108.30 3.96 0.30 N 9 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.14 108.30 1.84 0.30 N 10 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 113.05 108.30 4.75 0.30 N 11 1 "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? "C3'" C DC 17 ? ? 101.47 104.50 -3.03 0.40 N 12 1 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 111.05 108.30 2.75 0.30 N 13 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 110.12 108.30 1.82 0.30 N 14 1 "O4'" C DA 21 ? ? "C1'" C DA 21 ? ? N9 C DA 21 ? ? 113.25 108.30 4.95 0.30 N 15 1 "O4'" D DA 22 ? ? "C1'" D DA 22 ? ? N9 D DA 22 ? ? 112.69 108.30 4.39 0.30 N 16 1 "O4'" D DT 23 ? ? "C1'" D DT 23 ? ? N1 D DT 23 ? ? 110.58 108.30 2.28 0.30 N 17 1 "O4'" D DC 24 ? ? "C1'" D DC 24 ? ? N1 D DC 24 ? ? 112.48 108.30 4.18 0.30 N 18 1 "O4'" D DG 26 ? ? "C1'" D DG 26 ? ? N9 D DG 26 ? ? 112.63 108.30 4.33 0.30 N 19 1 "O4'" D DG 27 ? ? "C1'" D DG 27 ? ? N9 D DG 27 ? ? 113.38 108.30 5.08 0.30 N 20 1 "O4'" D DG 29 ? ? "C1'" D DG 29 ? ? N9 D DG 29 ? ? 110.92 108.30 2.62 0.30 N 21 1 "O4'" D DT 31 ? ? "C1'" D DT 31 ? ? N1 D DT 31 ? ? 110.41 108.30 2.11 0.30 N 22 1 "O4'" D DC 34 ? ? "C1'" D DC 34 ? ? N1 D DC 34 ? ? 112.87 108.30 4.57 0.30 N 23 1 "O4'" D DT 36 ? ? "C1'" D DT 36 ? ? N1 D DT 36 ? ? 111.80 108.30 3.50 0.30 N 24 1 "C3'" D DC 39 ? ? "C2'" D DC 39 ? ? "C1'" D DC 39 ? ? 96.67 102.40 -5.73 0.80 N 25 1 "O4'" D DC 39 ? ? "C1'" D DC 39 ? ? N1 D DC 39 ? ? 111.96 108.30 3.66 0.30 N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.1870 29.3670 33.0710 .0214 -.1818 -.2091 -.0269 .1143 .0115 2.6828 12.3002 5.5397 -.6772 -.2233 1.7250 .0198 .0077 -.0476 -.7935 -.0620 -.7270 -.0140 .2685 .0422 'X-RAY DIFFRACTION' 2 ? refined -4.0500 20.2410 62.3060 -.1070 -.2200 -.2351 -.0255 .0476 -.0075 3.2291 9.7122 3.0486 -.7342 -1.6442 -.8750 -.1014 -.0168 -.0182 .1202 .0717 .1865 .0554 -.0798 .0297 'X-RAY DIFFRACTION' 3 ? refined 25.0810 28.3670 48.0200 .0351 .3027 .1206 -.1352 -.0793 .0454 10.0942 .3092 .0438 1.7600 -.5841 -.0971 -.3632 -.1037 -.5070 -.0403 .2098 -.3674 -.0539 .2261 .1534 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 C 8 A 60 C 63 ? 'X-RAY DIFFRACTION' ? 2 2 B 2 D 5 B 59 D 62 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 A 1 C 21 A 21 ? 'X-RAY DIFFRACTION' ? 4 3 D 22 B 1 D 42 B 21 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? C GLY 1 2 1 Y 1 A SER -1 ? C SER 2 3 1 Y 1 A ASP 0 ? C ASP 3 4 1 Y 1 A GLU 1 ? C GLU 4 5 1 Y 1 A LYS 2 ? C LYS 5 6 1 Y 1 A ARG 3 ? C ARG 6 7 1 Y 1 A PRO 4 ? C PRO 7 8 1 Y 1 B GLY -2 ? D GLY 1 9 1 Y 1 B SER -1 ? D SER 2 10 1 Y 1 B ASP 0 ? D ASP 3 11 1 Y 1 B GLU 1 ? D GLU 4 12 1 Y 1 B THR 60 ? D THR 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 GOL C1 C N N 266 GOL O1 O N N 267 GOL C2 C N N 268 GOL O2 O N N 269 GOL C3 C N N 270 GOL O3 O N N 271 GOL H11 H N N 272 GOL H12 H N N 273 GOL HO1 H N N 274 GOL H2 H N N 275 GOL HO2 H N N 276 GOL H31 H N N 277 GOL H32 H N N 278 GOL HO3 H N N 279 HOH O O N N 280 HOH H1 H N N 281 HOH H2 H N N 282 ILE N N N N 283 ILE CA C N S 284 ILE C C N N 285 ILE O O N N 286 ILE CB C N S 287 ILE CG1 C N N 288 ILE CG2 C N N 289 ILE CD1 C N N 290 ILE OXT O N N 291 ILE H H N N 292 ILE H2 H N N 293 ILE HA H N N 294 ILE HB H N N 295 ILE HG12 H N N 296 ILE HG13 H N N 297 ILE HG21 H N N 298 ILE HG22 H N N 299 ILE HG23 H N N 300 ILE HD11 H N N 301 ILE HD12 H N N 302 ILE HD13 H N N 303 ILE HXT H N N 304 LEU N N N N 305 LEU CA C N S 306 LEU C C N N 307 LEU O O N N 308 LEU CB C N N 309 LEU CG C N N 310 LEU CD1 C N N 311 LEU CD2 C N N 312 LEU OXT O N N 313 LEU H H N N 314 LEU H2 H N N 315 LEU HA H N N 316 LEU HB2 H N N 317 LEU HB3 H N N 318 LEU HG H N N 319 LEU HD11 H N N 320 LEU HD12 H N N 321 LEU HD13 H N N 322 LEU HD21 H N N 323 LEU HD22 H N N 324 LEU HD23 H N N 325 LEU HXT H N N 326 LYS N N N N 327 LYS CA C N S 328 LYS C C N N 329 LYS O O N N 330 LYS CB C N N 331 LYS CG C N N 332 LYS CD C N N 333 LYS CE C N N 334 LYS NZ N N N 335 LYS OXT O N N 336 LYS H H N N 337 LYS H2 H N N 338 LYS HA H N N 339 LYS HB2 H N N 340 LYS HB3 H N N 341 LYS HG2 H N N 342 LYS HG3 H N N 343 LYS HD2 H N N 344 LYS HD3 H N N 345 LYS HE2 H N N 346 LYS HE3 H N N 347 LYS HZ1 H N N 348 LYS HZ2 H N N 349 LYS HZ3 H N N 350 LYS HXT H N N 351 MET N N N N 352 MET CA C N S 353 MET C C N N 354 MET O O N N 355 MET CB C N N 356 MET CG C N N 357 MET SD S N N 358 MET CE C N N 359 MET OXT O N N 360 MET H H N N 361 MET H2 H N N 362 MET HA H N N 363 MET HB2 H N N 364 MET HB3 H N N 365 MET HG2 H N N 366 MET HG3 H N N 367 MET HE1 H N N 368 MET HE2 H N N 369 MET HE3 H N N 370 MET HXT H N N 371 P2O C13 C N N 372 P2O C9 C N N 373 P2O C11 C N N 374 P2O C8 C N N 375 P2O C7 C N N 376 P2O C14 C N N 377 P2O O11 O N N 378 P2O N10 N N N 379 P2O O12 O N N 380 P2O H131 H N N 381 P2O H132 H N N 382 P2O H91 H N N 383 P2O H92 H N N 384 P2O H7 H N N 385 P2O H141 H N N 386 P2O H142 H N N 387 PHE N N N N 388 PHE CA C N S 389 PHE C C N N 390 PHE O O N N 391 PHE CB C N N 392 PHE CG C Y N 393 PHE CD1 C Y N 394 PHE CD2 C Y N 395 PHE CE1 C Y N 396 PHE CE2 C Y N 397 PHE CZ C Y N 398 PHE OXT O N N 399 PHE H H N N 400 PHE H2 H N N 401 PHE HA H N N 402 PHE HB2 H N N 403 PHE HB3 H N N 404 PHE HD1 H N N 405 PHE HD2 H N N 406 PHE HE1 H N N 407 PHE HE2 H N N 408 PHE HZ H N N 409 PHE HXT H N N 410 PRO N N N N 411 PRO CA C N S 412 PRO C C N N 413 PRO O O N N 414 PRO CB C N N 415 PRO CG C N N 416 PRO CD C N N 417 PRO OXT O N N 418 PRO H H N N 419 PRO HA H N N 420 PRO HB2 H N N 421 PRO HB3 H N N 422 PRO HG2 H N N 423 PRO HG3 H N N 424 PRO HD2 H N N 425 PRO HD3 H N N 426 PRO HXT H N N 427 SER N N N N 428 SER CA C N S 429 SER C C N N 430 SER O O N N 431 SER CB C N N 432 SER OG O N N 433 SER OXT O N N 434 SER H H N N 435 SER H2 H N N 436 SER HA H N N 437 SER HB2 H N N 438 SER HB3 H N N 439 SER HG H N N 440 SER HXT H N N 441 THR N N N N 442 THR CA C N S 443 THR C C N N 444 THR O O N N 445 THR CB C N R 446 THR OG1 O N N 447 THR CG2 C N N 448 THR OXT O N N 449 THR H H N N 450 THR H2 H N N 451 THR HA H N N 452 THR HB H N N 453 THR HG1 H N N 454 THR HG21 H N N 455 THR HG22 H N N 456 THR HG23 H N N 457 THR HXT H N N 458 TRP N N N N 459 TRP CA C N S 460 TRP C C N N 461 TRP O O N N 462 TRP CB C N N 463 TRP CG C Y N 464 TRP CD1 C Y N 465 TRP CD2 C Y N 466 TRP NE1 N Y N 467 TRP CE2 C Y N 468 TRP CE3 C Y N 469 TRP CZ2 C Y N 470 TRP CZ3 C Y N 471 TRP CH2 C Y N 472 TRP OXT O N N 473 TRP H H N N 474 TRP H2 H N N 475 TRP HA H N N 476 TRP HB2 H N N 477 TRP HB3 H N N 478 TRP HD1 H N N 479 TRP HE1 H N N 480 TRP HE3 H N N 481 TRP HZ2 H N N 482 TRP HZ3 H N N 483 TRP HH2 H N N 484 TRP HXT H N N 485 TYR N N N N 486 TYR CA C N S 487 TYR C C N N 488 TYR O O N N 489 TYR CB C N N 490 TYR CG C Y N 491 TYR CD1 C Y N 492 TYR CD2 C Y N 493 TYR CE1 C Y N 494 TYR CE2 C Y N 495 TYR CZ C Y N 496 TYR OH O N N 497 TYR OXT O N N 498 TYR H H N N 499 TYR H2 H N N 500 TYR HA H N N 501 TYR HB2 H N N 502 TYR HB3 H N N 503 TYR HD1 H N N 504 TYR HD2 H N N 505 TYR HE1 H N N 506 TYR HE2 H N N 507 TYR HH H N N 508 TYR HXT H N N 509 VAL N N N N 510 VAL CA C N S 511 VAL C C N N 512 VAL O O N N 513 VAL CB C N N 514 VAL CG1 C N N 515 VAL CG2 C N N 516 VAL OXT O N N 517 VAL H H N N 518 VAL H2 H N N 519 VAL HA H N N 520 VAL HB H N N 521 VAL HG11 H N N 522 VAL HG12 H N N 523 VAL HG13 H N N 524 VAL HG21 H N N 525 VAL HG22 H N N 526 VAL HG23 H N N 527 VAL HXT H N N 528 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 GOL C1 O1 sing N N 265 GOL C1 C2 sing N N 266 GOL C1 H11 sing N N 267 GOL C1 H12 sing N N 268 GOL O1 HO1 sing N N 269 GOL C2 O2 sing N N 270 GOL C2 C3 sing N N 271 GOL C2 H2 sing N N 272 GOL O2 HO2 sing N N 273 GOL C3 O3 sing N N 274 GOL C3 H31 sing N N 275 GOL C3 H32 sing N N 276 GOL O3 HO3 sing N N 277 HOH O H1 sing N N 278 HOH O H2 sing N N 279 ILE N CA sing N N 280 ILE N H sing N N 281 ILE N H2 sing N N 282 ILE CA C sing N N 283 ILE CA CB sing N N 284 ILE CA HA sing N N 285 ILE C O doub N N 286 ILE C OXT sing N N 287 ILE CB CG1 sing N N 288 ILE CB CG2 sing N N 289 ILE CB HB sing N N 290 ILE CG1 CD1 sing N N 291 ILE CG1 HG12 sing N N 292 ILE CG1 HG13 sing N N 293 ILE CG2 HG21 sing N N 294 ILE CG2 HG22 sing N N 295 ILE CG2 HG23 sing N N 296 ILE CD1 HD11 sing N N 297 ILE CD1 HD12 sing N N 298 ILE CD1 HD13 sing N N 299 ILE OXT HXT sing N N 300 LEU N CA sing N N 301 LEU N H sing N N 302 LEU N H2 sing N N 303 LEU CA C sing N N 304 LEU CA CB sing N N 305 LEU CA HA sing N N 306 LEU C O doub N N 307 LEU C OXT sing N N 308 LEU CB CG sing N N 309 LEU CB HB2 sing N N 310 LEU CB HB3 sing N N 311 LEU CG CD1 sing N N 312 LEU CG CD2 sing N N 313 LEU CG HG sing N N 314 LEU CD1 HD11 sing N N 315 LEU CD1 HD12 sing N N 316 LEU CD1 HD13 sing N N 317 LEU CD2 HD21 sing N N 318 LEU CD2 HD22 sing N N 319 LEU CD2 HD23 sing N N 320 LEU OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 MET N CA sing N N 346 MET N H sing N N 347 MET N H2 sing N N 348 MET CA C sing N N 349 MET CA CB sing N N 350 MET CA HA sing N N 351 MET C O doub N N 352 MET C OXT sing N N 353 MET CB CG sing N N 354 MET CB HB2 sing N N 355 MET CB HB3 sing N N 356 MET CG SD sing N N 357 MET CG HG2 sing N N 358 MET CG HG3 sing N N 359 MET SD CE sing N N 360 MET CE HE1 sing N N 361 MET CE HE2 sing N N 362 MET CE HE3 sing N N 363 MET OXT HXT sing N N 364 P2O C13 C14 sing N N 365 P2O C13 O12 sing N N 366 P2O C13 H131 sing N N 367 P2O C13 H132 sing N N 368 P2O C9 C8 sing N N 369 P2O C9 N10 sing N N 370 P2O C9 H91 sing N N 371 P2O C9 H92 sing N N 372 P2O C11 O11 doub N N 373 P2O C11 N10 sing N N 374 P2O C11 O12 sing N N 375 P2O C8 C7 trip N N 376 P2O C7 H7 sing N N 377 P2O C14 N10 sing N N 378 P2O C14 H141 sing N N 379 P2O C14 H142 sing N N 380 PHE N CA sing N N 381 PHE N H sing N N 382 PHE N H2 sing N N 383 PHE CA C sing N N 384 PHE CA CB sing N N 385 PHE CA HA sing N N 386 PHE C O doub N N 387 PHE C OXT sing N N 388 PHE CB CG sing N N 389 PHE CB HB2 sing N N 390 PHE CB HB3 sing N N 391 PHE CG CD1 doub Y N 392 PHE CG CD2 sing Y N 393 PHE CD1 CE1 sing Y N 394 PHE CD1 HD1 sing N N 395 PHE CD2 CE2 doub Y N 396 PHE CD2 HD2 sing N N 397 PHE CE1 CZ doub Y N 398 PHE CE1 HE1 sing N N 399 PHE CE2 CZ sing Y N 400 PHE CE2 HE2 sing N N 401 PHE CZ HZ sing N N 402 PHE OXT HXT sing N N 403 PRO N CA sing N N 404 PRO N CD sing N N 405 PRO N H sing N N 406 PRO CA C sing N N 407 PRO CA CB sing N N 408 PRO CA HA sing N N 409 PRO C O doub N N 410 PRO C OXT sing N N 411 PRO CB CG sing N N 412 PRO CB HB2 sing N N 413 PRO CB HB3 sing N N 414 PRO CG CD sing N N 415 PRO CG HG2 sing N N 416 PRO CG HG3 sing N N 417 PRO CD HD2 sing N N 418 PRO CD HD3 sing N N 419 PRO OXT HXT sing N N 420 SER N CA sing N N 421 SER N H sing N N 422 SER N H2 sing N N 423 SER CA C sing N N 424 SER CA CB sing N N 425 SER CA HA sing N N 426 SER C O doub N N 427 SER C OXT sing N N 428 SER CB OG sing N N 429 SER CB HB2 sing N N 430 SER CB HB3 sing N N 431 SER OG HG sing N N 432 SER OXT HXT sing N N 433 THR N CA sing N N 434 THR N H sing N N 435 THR N H2 sing N N 436 THR CA C sing N N 437 THR CA CB sing N N 438 THR CA HA sing N N 439 THR C O doub N N 440 THR C OXT sing N N 441 THR CB OG1 sing N N 442 THR CB CG2 sing N N 443 THR CB HB sing N N 444 THR OG1 HG1 sing N N 445 THR CG2 HG21 sing N N 446 THR CG2 HG22 sing N N 447 THR CG2 HG23 sing N N 448 THR OXT HXT sing N N 449 TRP N CA sing N N 450 TRP N H sing N N 451 TRP N H2 sing N N 452 TRP CA C sing N N 453 TRP CA CB sing N N 454 TRP CA HA sing N N 455 TRP C O doub N N 456 TRP C OXT sing N N 457 TRP CB CG sing N N 458 TRP CB HB2 sing N N 459 TRP CB HB3 sing N N 460 TRP CG CD1 doub Y N 461 TRP CG CD2 sing Y N 462 TRP CD1 NE1 sing Y N 463 TRP CD1 HD1 sing N N 464 TRP CD2 CE2 doub Y N 465 TRP CD2 CE3 sing Y N 466 TRP NE1 CE2 sing Y N 467 TRP NE1 HE1 sing N N 468 TRP CE2 CZ2 sing Y N 469 TRP CE3 CZ3 doub Y N 470 TRP CE3 HE3 sing N N 471 TRP CZ2 CH2 doub Y N 472 TRP CZ2 HZ2 sing N N 473 TRP CZ3 CH2 sing Y N 474 TRP CZ3 HZ3 sing N N 475 TRP CH2 HH2 sing N N 476 TRP OXT HXT sing N N 477 TYR N CA sing N N 478 TYR N H sing N N 479 TYR N H2 sing N N 480 TYR CA C sing N N 481 TYR CA CB sing N N 482 TYR CA HA sing N N 483 TYR C O doub N N 484 TYR C OXT sing N N 485 TYR CB CG sing N N 486 TYR CB HB2 sing N N 487 TYR CB HB3 sing N N 488 TYR CG CD1 doub Y N 489 TYR CG CD2 sing Y N 490 TYR CD1 CE1 sing Y N 491 TYR CD1 HD1 sing N N 492 TYR CD2 CE2 doub Y N 493 TYR CD2 HD2 sing N N 494 TYR CE1 CZ doub Y N 495 TYR CE1 HE1 sing N N 496 TYR CE2 CZ sing Y N 497 TYR CE2 HE2 sing N N 498 TYR CZ OH sing N N 499 TYR OH HH sing N N 500 TYR OXT HXT sing N N 501 VAL N CA sing N N 502 VAL N H sing N N 503 VAL N H2 sing N N 504 VAL CA C sing N N 505 VAL CA CB sing N N 506 VAL CA HA sing N N 507 VAL C O doub N N 508 VAL C OXT sing N N 509 VAL CB CG1 sing N N 510 VAL CB CG2 sing N N 511 VAL CB HB sing N N 512 VAL CG1 HG11 sing N N 513 VAL CG1 HG12 sing N N 514 VAL CG1 HG13 sing N N 515 VAL CG2 HG21 sing N N 516 VAL CG2 HG22 sing N N 517 VAL CG2 HG23 sing N N 518 VAL OXT HXT sing N N 519 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOT 'double helix' 2HOT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 -0.257 -0.176 0.001 -5.405 -9.605 5.577 1 C_DT2:DA42_D C 2 ? D 42 ? 20 1 1 A DT 3 1_555 B DA 20 1_555 0.053 -0.319 0.168 -0.560 -5.966 1.656 2 C_DT3:DA41_D C 3 ? D 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 0.038 -0.355 -0.201 2.102 -19.506 5.104 3 C_DT4:DA40_D C 4 ? D 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.738 -0.463 -0.266 -12.720 -9.667 -1.728 4 C_DG5:DC39_D C 5 ? D 39 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 -0.009 -0.006 0.179 -6.061 -4.771 -5.502 5 C_DC6:DG38_D C 6 ? D 38 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 0.518 -0.424 -0.025 3.148 -5.295 -0.031 6 C_DC7:DG37_D C 7 ? D 37 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 1.041 -0.287 0.195 -2.353 -12.477 -3.041 7 C_DA8:DT36_D C 8 ? D 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 0.266 -0.280 0.040 -0.374 -10.265 -4.223 8 C_DT9:DA35_D C 9 ? D 35 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.225 -0.204 0.042 -2.473 -7.129 0.720 9 C_DG10:DC34_D C 10 ? D 34 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 0.001 -0.074 -0.112 7.642 -9.036 8.184 10 C_DT11:DA33_D C 11 ? D 33 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 0.325 -0.354 -0.386 0.204 -16.220 2.949 11 C_DA12:DT32_D C 12 ? D 32 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 -0.109 -0.379 0.040 2.608 -15.675 2.817 12 C_DA13:DT31_D C 13 ? D 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.237 -0.290 -0.030 -3.859 -16.867 0.832 13 C_DT14:DA30_D C 14 ? D 30 ? 20 1 1 A DC 15 1_555 B DG 8 1_555 0.300 -0.145 -0.082 -0.925 -8.191 1.936 14 C_DC15:DG29_D C 15 ? D 29 ? 19 1 1 A DC 16 1_555 B DG 7 1_555 0.375 -0.426 -0.105 5.899 -8.368 -1.463 15 C_DC16:DG28_D C 16 ? D 28 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 0.462 -0.439 0.323 0.911 -20.609 -2.480 16 C_DC17:DG27_D C 17 ? D 27 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 -0.226 -0.262 0.055 -9.006 -10.676 -1.504 17 C_DC18:DG26_D C 18 ? D 26 ? 19 1 1 A DG 19 1_555 B DC 4 1_555 0.005 -0.231 -0.090 3.418 -10.463 0.297 18 C_DG19:DC25_D C 19 ? D 25 ? 19 1 1 A DG 20 1_555 B DC 3 1_555 -0.387 -0.311 -0.302 -0.568 -11.427 -0.410 19 C_DG20:DC24_D C 20 ? D 24 ? 19 1 1 A DA 21 1_555 B DT 2 1_555 0.126 -0.174 -0.080 4.770 -18.739 4.276 20 C_DA21:DT23_D C 21 ? D 23 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 1.034 0.977 3.268 1.611 8.121 36.327 0.410 -1.397 3.440 12.822 -2.544 37.227 1 CC_DT2DT3:DA41DA42_DD C 2 ? D 42 ? C 3 ? D 41 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.140 0.130 3.279 1.627 0.675 31.128 0.113 0.572 3.269 1.257 -3.028 31.177 2 CC_DT3DT4:DA40DA41_DD C 3 ? D 41 ? C 4 ? D 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.224 -0.501 3.587 2.281 12.346 35.988 -2.459 -0.031 3.255 19.274 -3.561 38.047 3 CC_DT4DG5:DC39DA40_DD C 4 ? D 40 ? C 5 ? D 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 -0.090 0.022 3.171 -2.243 -1.027 34.887 0.187 -0.179 3.168 -1.710 3.736 34.971 4 CC_DG5DC6:DG38DC39_DD C 5 ? D 39 ? C 6 ? D 38 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 -0.073 0.327 3.169 2.591 -1.421 33.009 0.804 0.548 3.138 -2.495 -4.548 33.137 5 CC_DC6DC7:DG37DG38_DD C 6 ? D 38 ? C 7 ? D 37 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 -0.424 0.700 3.519 -4.236 -2.229 47.840 1.049 0.162 3.508 -2.741 5.209 48.065 6 CC_DC7DA8:DT36DG37_DD C 7 ? D 37 ? C 8 ? D 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 0.041 -0.321 3.245 0.717 -4.463 27.760 0.387 0.083 3.256 -9.225 -1.482 28.118 7 CC_DA8DT9:DA35DT36_DD C 8 ? D 36 ? C 9 ? D 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 0.536 0.451 3.306 1.372 4.845 37.755 0.063 -0.643 3.353 7.447 -2.109 38.077 8 CC_DT9DG10:DC34DA35_DD C 9 ? D 35 ? C 10 ? D 34 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 -0.018 -0.097 3.076 1.008 4.664 25.033 -1.472 0.311 3.006 10.637 -2.300 25.476 9 CC_DG10DT11:DA33DC34_DD C 10 ? D 34 ? C 11 ? D 33 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.838 1.107 3.428 -0.437 5.705 44.077 0.900 1.065 3.545 7.564 0.579 44.429 10 CC_DT11DA12:DT32DA33_DD C 11 ? D 33 ? C 12 ? D 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.388 -0.145 3.214 -3.955 1.976 32.534 -0.586 -1.348 3.132 3.507 7.020 32.825 11 CC_DA12DA13:DT31DT32_DD C 12 ? D 32 ? C 13 ? D 31 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.737 -1.091 3.399 -0.743 1.291 31.916 -2.224 1.200 3.369 2.346 1.350 31.949 12 CC_DA13DT14:DA30DT31_DD C 13 ? D 31 ? C 14 ? D 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DC 15 1_555 B DG 8 1_555 -0.108 -0.421 3.307 -1.635 -1.499 34.842 -0.472 -0.071 3.323 -2.500 2.728 34.910 13 CC_DT14DC15:DG29DA30_DD C 14 ? D 30 ? C 15 ? D 29 ? 1 A DC 15 1_555 B DG 8 1_555 A DC 16 1_555 B DG 7 1_555 0.297 -0.274 3.178 0.038 8.279 31.373 -1.892 -0.526 3.010 14.986 -0.068 32.421 14 CC_DC15DC16:DG28DG29_DD C 15 ? D 29 ? C 16 ? D 28 ? 1 A DC 16 1_555 B DG 7 1_555 A DC 17 1_555 B DG 6 1_555 -0.305 -0.729 3.456 -4.851 4.469 37.036 -1.742 -0.190 3.361 6.968 7.564 37.598 15 CC_DC16DC17:DG27DG28_DD C 16 ? D 28 ? C 17 ? D 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.342 -0.720 3.405 6.440 5.801 32.013 -2.272 0.520 3.235 10.284 -11.419 33.136 16 CC_DC17DC18:DG26DG27_DD C 17 ? D 27 ? C 18 ? D 26 ? 1 A DC 18 1_555 B DG 5 1_555 A DG 19 1_555 B DC 4 1_555 -0.004 0.270 3.196 3.242 11.592 32.123 -1.355 0.514 3.092 20.089 -5.618 34.248 17 CC_DC18DG19:DC25DG26_DD C 18 ? D 26 ? C 19 ? D 25 ? 1 A DG 19 1_555 B DC 4 1_555 A DG 20 1_555 B DC 3 1_555 0.133 -0.534 3.476 1.180 6.181 30.585 -2.224 -0.012 3.309 11.565 -2.209 31.211 18 CC_DG19DG20:DC24DC25_DD C 19 ? D 25 ? C 20 ? D 24 ? 1 A DG 20 1_555 B DC 3 1_555 A DA 21 1_555 B DT 2 1_555 0.265 -0.136 3.165 -0.986 6.113 32.663 -1.222 -0.623 3.081 10.749 1.733 33.229 19 CC_DG20DA21:DT23DC24_DD C 20 ? D 24 ? C 21 ? D 23 ? # _atom_sites.entry_id 2HOT _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004273 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022200 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015489 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_