HEADER LUMINESCENT PROTEIN 17-JUL-06 2HPK OBSLTE 16-OCT-13 2HPK 4MN0 TITLE CRYSTAL STRUCTURE OF PHOTOPROTEIN BEROVIN FROM BEROE ABYSSICOLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOPROTEIN BEROVIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEROE ABYSSICOLA; SOURCE 3 ORGANISM_TAXID: 320166; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHOTO PROTEIN, BEROVIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, KEYWDS 3 LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.J.LIU,G.STEPANYUK,E.S.VYSOTSKI,J.LEE,J.P.ROSE,B.C.WANG,SOUTHEAST AUTHOR 2 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 3 16-OCT-13 2HPK 1 OBSLTE VERSN REVDAT 2 24-FEB-09 2HPK 1 VERSN REVDAT 1 03-JUL-07 2HPK 0 JRNL AUTH Z.J.LIU,G.STEPANYUK,E.S.VYSOTSKI,J.LEE,J.ROSE,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF PHOTOPROTEIN BEROVIN FROM BEROE JRNL TITL 2 ABYSSICOLA AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 13550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1558 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2096 ; 1.630 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 180 ; 5.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;34.317 ;23.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 282 ;16.285 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1222 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 799 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1081 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.134 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 937 ; 1.337 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1451 ; 1.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 720 ; 3.374 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 645 ; 5.030 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SE-SAD REMARK 200 SOFTWARE USED: SCA2STRUCTURE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER DROPS CONTAINING EQUAL REMARK 280 VOLUMES OF PROTEIN SOLUTION (15 MG/ML) AND PRECIPITATE SOLUTION REMARK 280 (0.2M MAGNESIUM NITRATE HEXAHYDRATE, 20% PEG 3350, PH 5.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.88500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.94950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.88500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.94950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 VAL A 27 REMARK 465 GLU A 28 REMARK 465 ASP A 29 REMARK 465 LEU A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 LYS A 33 REMARK 465 MSE A 34 REMARK 465 LEU A 35 REMARK 465 GLU A 194 REMARK 465 PRO A 195 REMARK 465 TYR A 196 REMARK 465 ASP A 197 REMARK 465 PRO A 198 REMARK 465 GLN A 199 REMARK 465 TRP A 200 REMARK 465 ASP A 201 REMARK 465 GLY A 202 REMARK 465 VAL A 203 REMARK 465 TYR A 204 REMARK 465 ALA A 205 REMARK 465 TYR A 206 REMARK 465 LYS A 207 REMARK 465 TYR A 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 117 CG - CD - NE ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 209 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD1 REMARK 620 2 ASP A 50 OD1 77.6 REMARK 620 3 LYS A 52 O 151.5 79.3 REMARK 620 4 GLU A 57 OE1 126.3 155.6 79.1 REMARK 620 5 GLU A 57 OE2 75.6 150.8 129.6 50.9 REMARK 620 6 MG A 210 MG 95.6 77.2 95.4 93.6 94.0 REMARK 620 7 ASP A 46 OD1 78.1 78.7 81.2 109.0 106.6 155.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE1 REMARK 620 2 ASP A 50 OD1 154.7 REMARK 620 3 ASP A 50 OD2 111.4 46.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 211 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 366 O REMARK 620 2 ASP A 140 OD1 81.5 REMARK 620 3 ASP A 138 OD1 155.1 75.0 REMARK 620 4 THR A 144 O 113.5 151.9 85.0 REMARK 620 5 GLU A 149 OE1 86.0 126.4 114.7 79.7 REMARK 620 6 GLU A 149 OE2 87.8 76.7 94.8 125.3 50.9 REMARK 620 7 ASP A 142 OD1 87.0 76.9 79.6 80.3 154.2 153.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 212 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 ASP A 174 OD1 90.6 REMARK 620 3 LYS A 178 O 89.5 155.3 REMARK 620 4 GLU A 180 OE1 176.4 86.8 91.8 REMARK 620 5 GLU A 183 OE1 102.3 121.4 82.6 81.2 REMARK 620 6 GLU A 183 OE2 99.4 70.1 134.1 82.1 51.5 REMARK 620 7 SER A 176 OG 91.5 78.1 77.2 85.6 155.5 146.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 213 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 240 O REMARK 620 2 HOH A 249 O 88.2 REMARK 620 3 HOH A 231 O 95.9 91.1 REMARK 620 4 HOH A 234 O 91.9 176.9 91.9 REMARK 620 5 HOH A 224 O 175.7 88.7 87.2 91.1 REMARK 620 6 HOH A 221 O 91.4 92.1 172.1 84.8 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BA13 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CURRENTLY THERE IS NO AMINOACID SEQUENCE DATABASE REMARK 999 REFERENCE AVAILABLE FOR THE PROTEIN DBREF 2HPK A 1 208 PDB 2HPK 2HPK 1 208 SEQRES 1 A 208 MSE THR GLU ARG LEU ASN GLU GLN ASN ASN GLU SER TYR SEQRES 2 A 208 ARG TYR LEU ARG SER VAL GLY ASN GLN TRP GLN PHE ASN SEQRES 3 A 208 VAL GLU ASP LEU HIS PRO LYS MSE LEU SER ARG LEU TYR SEQRES 4 A 208 LYS ARG PHE ASP THR PHE ASP LEU ASP SER ASP GLY LYS SEQRES 5 A 208 MSE GLU MSE ASP GLU VAL LEU TYR TRP PRO ASP ARG MSE SEQRES 6 A 208 ARG GLN LEU VAL ASN ALA THR ASP GLU GLN VAL GLU LYS SEQRES 7 A 208 MSE ARG ASP ALA VAL ARG VAL PHE PHE LEU HIS LYS GLY SEQRES 8 A 208 VAL GLU PRO VAL ASN GLY LEU LEU ARG GLU ASP TRP VAL SEQRES 9 A 208 GLU ALA ASN ARG VAL PHE ALA GLU ALA GLU ARG GLU ARG SEQRES 10 A 208 GLU ARG ARG GLY GLU PRO SER LEU ILE ALA LEU LEU SER SEQRES 11 A 208 ASN SER TYR TYR ASP VAL LEU ASP ASP ASP GLY ASP GLY SEQRES 12 A 208 THR VAL ASP VAL ASP GLU LEU LYS THR MSE MSE LYS ALA SEQRES 13 A 208 PHE ASP VAL PRO GLN GLU ALA ALA TYR THR PHE PHE GLU SEQRES 14 A 208 LYS ALA ASP THR ASP LYS SER GLY LYS LEU GLU ARG THR SEQRES 15 A 208 GLU LEU VAL HIS LEU PHE ARG LYS PHE TRP MSE GLU PRO SEQRES 16 A 208 TYR ASP PRO GLN TRP ASP GLY VAL TYR ALA TYR LYS TYR MODRES 2HPK MSE A 53 MET SELENOMETHIONINE MODRES 2HPK MSE A 55 MET SELENOMETHIONINE MODRES 2HPK MSE A 65 MET SELENOMETHIONINE MODRES 2HPK MSE A 79 MET SELENOMETHIONINE MODRES 2HPK MSE A 153 MET SELENOMETHIONINE MODRES 2HPK MSE A 154 MET SELENOMETHIONINE MODRES 2HPK MSE A 193 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 55 8 HET MSE A 65 8 HET MSE A 79 8 HET MSE A 153 8 HET MSE A 154 8 HET MSE A 193 8 HET MG A 209 1 HET MG A 210 1 HET MG A 211 1 HET MG A 212 1 HET MG A 213 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG 5(MG 2+) FORMUL 7 HOH *179(H2 O) HELIX 1 1 ASN A 10 VAL A 19 1 10 HELIX 2 2 SER A 36 ASP A 46 1 11 HELIX 3 3 GLU A 54 LEU A 59 1 6 HELIX 4 4 LEU A 59 VAL A 69 1 11 HELIX 5 5 THR A 72 LYS A 90 1 19 HELIX 6 6 ASP A 102 ARG A 120 1 19 HELIX 7 7 SER A 124 ASP A 138 1 15 HELIX 8 8 ASP A 146 PHE A 157 1 12 HELIX 9 9 GLU A 162 ASP A 172 1 11 HELIX 10 10 GLU A 180 MSE A 193 1 14 SHEET 1 A 2 LYS A 52 MSE A 53 0 SHEET 2 A 2 LEU A 98 LEU A 99 -1 O LEU A 98 N MSE A 53 LINK C LYS A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N GLU A 54 1555 1555 1.33 LINK C GLU A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N ASP A 56 1555 1555 1.33 LINK C ARG A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N ARG A 66 1555 1555 1.32 LINK C LYS A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N ARG A 80 1555 1555 1.33 LINK C THR A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N LYS A 155 1555 1555 1.33 LINK C TRP A 192 N MSE A 193 1555 1555 1.33 LINK MG MG A 209 OD1 ASP A 48 1555 1555 2.45 LINK MG MG A 209 OD1 ASP A 50 1555 1555 2.44 LINK MG MG A 209 O LYS A 52 1555 1555 2.31 LINK MG MG A 209 OE1 GLU A 57 1555 1555 2.70 LINK MG MG A 209 OE2 GLU A 57 1555 1555 2.41 LINK MG MG A 209 MG MG A 210 1555 1555 2.14 LINK MG MG A 209 OD1 ASP A 46 1555 1555 2.33 LINK MG MG A 210 OE1 GLU A 54 1555 1555 2.89 LINK MG MG A 210 OD1 ASP A 50 1555 1555 2.87 LINK MG MG A 210 OD2 ASP A 50 1555 1555 2.52 LINK MG MG A 211 O HOH A 366 1555 1555 2.49 LINK MG MG A 211 OD1 ASP A 140 1555 1555 2.47 LINK MG MG A 211 OD1 ASP A 138 1555 1555 2.42 LINK MG MG A 211 O THR A 144 1555 1555 2.38 LINK MG MG A 211 OE1 GLU A 149 1555 1555 2.54 LINK MG MG A 211 OE2 GLU A 149 1555 1555 2.62 LINK MG MG A 211 OD1 ASP A 142 1555 1555 2.46 LINK MG MG A 212 OD1 ASP A 172 1555 1555 2.23 LINK MG MG A 212 OD1 ASP A 174 1555 1555 2.29 LINK MG MG A 212 O LYS A 178 1555 1555 2.25 LINK MG MG A 212 OE1 GLU A 180 1555 1555 1.96 LINK MG MG A 212 OE1 GLU A 183 1555 1555 2.50 LINK MG MG A 212 OE2 GLU A 183 1555 1555 2.58 LINK MG MG A 212 OG SER A 176 1555 1555 2.25 LINK MG MG A 213 O HOH A 240 1555 1555 2.11 LINK MG MG A 213 O HOH A 249 1555 1555 2.08 LINK MG MG A 213 O HOH A 231 1555 1555 2.14 LINK MG MG A 213 O HOH A 234 1555 1555 2.20 LINK MG MG A 213 O HOH A 224 1555 1555 2.25 LINK MG MG A 213 O HOH A 221 1555 2656 2.19 SITE 1 AC1 6 ASP A 46 ASP A 48 ASP A 50 LYS A 52 SITE 2 AC1 6 GLU A 57 MG A 210 SITE 1 AC2 6 ASP A 48 ASP A 50 LYS A 52 GLU A 54 SITE 2 AC2 6 GLU A 57 MG A 209 SITE 1 AC3 6 ASP A 138 ASP A 140 ASP A 142 THR A 144 SITE 2 AC3 6 GLU A 149 HOH A 366 SITE 1 AC4 6 ASP A 172 ASP A 174 SER A 176 LYS A 178 SITE 2 AC4 6 GLU A 180 GLU A 183 SITE 1 AC5 6 HOH A 221 HOH A 224 HOH A 231 HOH A 234 SITE 2 AC5 6 HOH A 240 HOH A 249 CRYST1 101.770 33.899 77.406 90.00 126.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009826 0.000000 0.007335 0.00000 SCALE2 0.000000 0.029499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016121 0.00000