HEADER OXIDOREDUCTASE 17-JUL-06 2HPV TITLE CRYSTAL STRUCTURE OF FMN-DEPENDENT AZOREDUCTASE FROM ENTEROCOCCUS TITLE 2 FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN-DEPENDENT NADH-AZOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.7.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: AZOR, AZOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) KEYWDS AZOREDUCTASE, ENTEROCOCCUS FAECALIS, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.J.LIU,L.CHEN,H.CHEN,J.ROSE,B.C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 2 STRUCTURAL GENOMICS (SECSG) REVDAT 4 13-SEP-17 2HPV 1 REMARK REVDAT 3 13-JUL-11 2HPV 1 VERSN REVDAT 2 24-FEB-09 2HPV 1 VERSN REVDAT 1 12-SEP-06 2HPV 0 JRNL AUTH Z.J.LIU,H.CHEN,L.CHEN,N.SHAH,J.P.ROSE,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF FMN-DEPENDENT AZOREDUCTASE FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 64925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6792 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9236 ; 1.660 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 824 ; 5.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;40.816 ;25.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1140 ;15.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1024 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5132 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2961 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4622 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 489 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 87 ; 0.263 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4304 ; 1.455 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6652 ; 1.908 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3058 ; 3.011 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2584 ; 4.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 208 5 REMARK 3 1 B 2 B 208 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 828 ; 0.19 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 803 ; 0.54 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 828 ; 2.15 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 803 ; 2.97 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 208 5 REMARK 3 1 C 2 C 208 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 828 ; 0.13 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 B (A): 803 ; 0.59 ; 5.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 828 ; 1.10 ; 2.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 803 ; 2.00 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 2 C 208 5 REMARK 3 1 D 2 D 208 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 C (A): 828 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 3 C (A): 803 ; 0.53 ; 5.00 REMARK 3 MEDIUM THERMAL 3 C (A**2): 828 ; 1.97 ; 2.00 REMARK 3 LOOSE THERMAL 3 C (A**2): 803 ; 2.54 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SCA2STRUCTURE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY HANGING DROP REMARK 280 VAPOR DIFFUSION USING 1 MICROLITER DROPS CONTAINING EQUAL REMARK 280 VOLUMES OF PROTEIN SOLUTION (10 MG/ML) AND A PRECIPITANT REMARK 280 SOLUTION CONTAINING 0.09M HEPES/NAOH BUFFER, 1.26M TRI-SODIUM REMARK 280 CITRATE DIHYDRATE, 10% V/V GLYCEROL, PH 7.5, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.01900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.36850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.36850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.01900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE B 1 REMARK 465 MSE C 1 REMARK 465 MSE D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 198 CG - SE - CE ANGL. DEV. = -13.5 DEGREES REMARK 500 SER D 2 N - CA - C ANGL. DEV. = 26.8 DEGREES REMARK 500 ARG D 21 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 21 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 53.98 -109.75 REMARK 500 LYS A 125 -50.40 -124.61 REMARK 500 GLU A 154 56.79 -99.29 REMARK 500 ALA B 9 68.05 -118.88 REMARK 500 ALA C 9 60.37 -109.52 REMARK 500 GLU C 154 41.41 -100.37 REMARK 500 ALA D 9 54.15 -117.13 REMARK 500 PHE D 71 -33.31 -34.94 REMARK 500 SER D 75 170.09 -59.63 REMARK 500 ASN D 121 78.98 -119.69 REMARK 500 GLU D 154 54.74 -111.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN D 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: FS-AZOA RELATED DB: TARGETDB DBREF 2HPV A 1 208 UNP Q831B2 AZOR_ENTFA 1 208 DBREF 2HPV B 1 208 UNP Q831B2 AZOR_ENTFA 1 208 DBREF 2HPV C 1 208 UNP Q831B2 AZOR_ENTFA 1 208 DBREF 2HPV D 1 208 UNP Q831B2 AZOR_ENTFA 1 208 SEQADV 2HPV MSE A 1 UNP Q831B2 MET 1 MODIFIED RESIDUE SEQADV 2HPV MSE A 51 UNP Q831B2 MET 51 MODIFIED RESIDUE SEQADV 2HPV MSE A 104 UNP Q831B2 MET 104 MODIFIED RESIDUE SEQADV 2HPV MSE A 198 UNP Q831B2 MET 198 MODIFIED RESIDUE SEQADV 2HPV MSE B 1 UNP Q831B2 MET 1 MODIFIED RESIDUE SEQADV 2HPV MSE B 51 UNP Q831B2 MET 51 MODIFIED RESIDUE SEQADV 2HPV MSE B 104 UNP Q831B2 MET 104 MODIFIED RESIDUE SEQADV 2HPV MSE B 198 UNP Q831B2 MET 198 MODIFIED RESIDUE SEQADV 2HPV MSE C 1 UNP Q831B2 MET 1 MODIFIED RESIDUE SEQADV 2HPV MSE C 51 UNP Q831B2 MET 51 MODIFIED RESIDUE SEQADV 2HPV MSE C 104 UNP Q831B2 MET 104 MODIFIED RESIDUE SEQADV 2HPV MSE C 198 UNP Q831B2 MET 198 MODIFIED RESIDUE SEQADV 2HPV MSE D 1 UNP Q831B2 MET 1 MODIFIED RESIDUE SEQADV 2HPV MSE D 51 UNP Q831B2 MET 51 MODIFIED RESIDUE SEQADV 2HPV MSE D 104 UNP Q831B2 MET 104 MODIFIED RESIDUE SEQADV 2HPV MSE D 198 UNP Q831B2 MET 198 MODIFIED RESIDUE SEQRES 1 A 208 MSE SER LYS LEU LEU VAL VAL LYS ALA HIS PRO LEU THR SEQRES 2 A 208 LYS GLU GLU SER ARG SER VAL ARG ALA LEU GLU THR PHE SEQRES 3 A 208 LEU ALA SER TYR ARG GLU THR ASN PRO SER ASP GLU ILE SEQRES 4 A 208 GLU ILE LEU ASP VAL TYR ALA PRO GLU THR ASN MSE PRO SEQRES 5 A 208 GLU ILE ASP GLU GLU LEU LEU SER ALA TRP GLY ALA LEU SEQRES 6 A 208 ARG ALA GLY ALA ALA PHE GLU THR LEU SER GLU ASN GLN SEQRES 7 A 208 GLN GLN LYS VAL ALA ARG PHE ASN GLU LEU THR ASP GLN SEQRES 8 A 208 PHE LEU SER ALA ASP LYS VAL VAL ILE ALA ASN PRO MSE SEQRES 9 A 208 TRP ASN LEU ASN VAL PRO THR ARG LEU LYS ALA TRP VAL SEQRES 10 A 208 ASP THR ILE ASN VAL ALA GLY LYS THR PHE GLN TYR THR SEQRES 11 A 208 ALA GLU GLY PRO LYS PRO LEU THR SER GLY LYS LYS ALA SEQRES 12 A 208 LEU HIS ILE GLN SER ASN GLY GLY PHE TYR GLU GLY LYS SEQRES 13 A 208 ASP PHE ALA SER GLN TYR ILE LYS ALA ILE LEU ASN PHE SEQRES 14 A 208 ILE GLY VAL ASP GLN VAL ASP GLY LEU PHE ILE GLU GLY SEQRES 15 A 208 ILE ASP HIS PHE PRO ASP ARG ALA GLU GLU LEU LEU ASN SEQRES 16 A 208 THR ALA MSE THR LYS ALA THR GLU TYR GLY LYS THR PHE SEQRES 1 B 208 MSE SER LYS LEU LEU VAL VAL LYS ALA HIS PRO LEU THR SEQRES 2 B 208 LYS GLU GLU SER ARG SER VAL ARG ALA LEU GLU THR PHE SEQRES 3 B 208 LEU ALA SER TYR ARG GLU THR ASN PRO SER ASP GLU ILE SEQRES 4 B 208 GLU ILE LEU ASP VAL TYR ALA PRO GLU THR ASN MSE PRO SEQRES 5 B 208 GLU ILE ASP GLU GLU LEU LEU SER ALA TRP GLY ALA LEU SEQRES 6 B 208 ARG ALA GLY ALA ALA PHE GLU THR LEU SER GLU ASN GLN SEQRES 7 B 208 GLN GLN LYS VAL ALA ARG PHE ASN GLU LEU THR ASP GLN SEQRES 8 B 208 PHE LEU SER ALA ASP LYS VAL VAL ILE ALA ASN PRO MSE SEQRES 9 B 208 TRP ASN LEU ASN VAL PRO THR ARG LEU LYS ALA TRP VAL SEQRES 10 B 208 ASP THR ILE ASN VAL ALA GLY LYS THR PHE GLN TYR THR SEQRES 11 B 208 ALA GLU GLY PRO LYS PRO LEU THR SER GLY LYS LYS ALA SEQRES 12 B 208 LEU HIS ILE GLN SER ASN GLY GLY PHE TYR GLU GLY LYS SEQRES 13 B 208 ASP PHE ALA SER GLN TYR ILE LYS ALA ILE LEU ASN PHE SEQRES 14 B 208 ILE GLY VAL ASP GLN VAL ASP GLY LEU PHE ILE GLU GLY SEQRES 15 B 208 ILE ASP HIS PHE PRO ASP ARG ALA GLU GLU LEU LEU ASN SEQRES 16 B 208 THR ALA MSE THR LYS ALA THR GLU TYR GLY LYS THR PHE SEQRES 1 C 208 MSE SER LYS LEU LEU VAL VAL LYS ALA HIS PRO LEU THR SEQRES 2 C 208 LYS GLU GLU SER ARG SER VAL ARG ALA LEU GLU THR PHE SEQRES 3 C 208 LEU ALA SER TYR ARG GLU THR ASN PRO SER ASP GLU ILE SEQRES 4 C 208 GLU ILE LEU ASP VAL TYR ALA PRO GLU THR ASN MSE PRO SEQRES 5 C 208 GLU ILE ASP GLU GLU LEU LEU SER ALA TRP GLY ALA LEU SEQRES 6 C 208 ARG ALA GLY ALA ALA PHE GLU THR LEU SER GLU ASN GLN SEQRES 7 C 208 GLN GLN LYS VAL ALA ARG PHE ASN GLU LEU THR ASP GLN SEQRES 8 C 208 PHE LEU SER ALA ASP LYS VAL VAL ILE ALA ASN PRO MSE SEQRES 9 C 208 TRP ASN LEU ASN VAL PRO THR ARG LEU LYS ALA TRP VAL SEQRES 10 C 208 ASP THR ILE ASN VAL ALA GLY LYS THR PHE GLN TYR THR SEQRES 11 C 208 ALA GLU GLY PRO LYS PRO LEU THR SER GLY LYS LYS ALA SEQRES 12 C 208 LEU HIS ILE GLN SER ASN GLY GLY PHE TYR GLU GLY LYS SEQRES 13 C 208 ASP PHE ALA SER GLN TYR ILE LYS ALA ILE LEU ASN PHE SEQRES 14 C 208 ILE GLY VAL ASP GLN VAL ASP GLY LEU PHE ILE GLU GLY SEQRES 15 C 208 ILE ASP HIS PHE PRO ASP ARG ALA GLU GLU LEU LEU ASN SEQRES 16 C 208 THR ALA MSE THR LYS ALA THR GLU TYR GLY LYS THR PHE SEQRES 1 D 208 MSE SER LYS LEU LEU VAL VAL LYS ALA HIS PRO LEU THR SEQRES 2 D 208 LYS GLU GLU SER ARG SER VAL ARG ALA LEU GLU THR PHE SEQRES 3 D 208 LEU ALA SER TYR ARG GLU THR ASN PRO SER ASP GLU ILE SEQRES 4 D 208 GLU ILE LEU ASP VAL TYR ALA PRO GLU THR ASN MSE PRO SEQRES 5 D 208 GLU ILE ASP GLU GLU LEU LEU SER ALA TRP GLY ALA LEU SEQRES 6 D 208 ARG ALA GLY ALA ALA PHE GLU THR LEU SER GLU ASN GLN SEQRES 7 D 208 GLN GLN LYS VAL ALA ARG PHE ASN GLU LEU THR ASP GLN SEQRES 8 D 208 PHE LEU SER ALA ASP LYS VAL VAL ILE ALA ASN PRO MSE SEQRES 9 D 208 TRP ASN LEU ASN VAL PRO THR ARG LEU LYS ALA TRP VAL SEQRES 10 D 208 ASP THR ILE ASN VAL ALA GLY LYS THR PHE GLN TYR THR SEQRES 11 D 208 ALA GLU GLY PRO LYS PRO LEU THR SER GLY LYS LYS ALA SEQRES 12 D 208 LEU HIS ILE GLN SER ASN GLY GLY PHE TYR GLU GLY LYS SEQRES 13 D 208 ASP PHE ALA SER GLN TYR ILE LYS ALA ILE LEU ASN PHE SEQRES 14 D 208 ILE GLY VAL ASP GLN VAL ASP GLY LEU PHE ILE GLU GLY SEQRES 15 D 208 ILE ASP HIS PHE PRO ASP ARG ALA GLU GLU LEU LEU ASN SEQRES 16 D 208 THR ALA MSE THR LYS ALA THR GLU TYR GLY LYS THR PHE MODRES 2HPV MSE A 51 MET SELENOMETHIONINE MODRES 2HPV MSE A 104 MET SELENOMETHIONINE MODRES 2HPV MSE A 198 MET SELENOMETHIONINE MODRES 2HPV MSE B 51 MET SELENOMETHIONINE MODRES 2HPV MSE B 104 MET SELENOMETHIONINE MODRES 2HPV MSE B 198 MET SELENOMETHIONINE MODRES 2HPV MSE C 51 MET SELENOMETHIONINE MODRES 2HPV MSE C 104 MET SELENOMETHIONINE MODRES 2HPV MSE C 198 MET SELENOMETHIONINE MODRES 2HPV MSE D 51 MET SELENOMETHIONINE MODRES 2HPV MSE D 104 MET SELENOMETHIONINE MODRES 2HPV MSE D 198 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 104 8 HET MSE A 198 8 HET MSE B 51 8 HET MSE B 104 8 HET MSE B 198 8 HET MSE C 51 8 HET MSE C 104 8 HET MSE C 198 8 HET MSE D 51 8 HET MSE D 104 8 HET MSE D 198 8 HET FMN A1200 31 HET FMN B1201 31 HET FMN C1202 31 HET FMN D1203 31 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *494(H2 O) HELIX 1 1 SER A 17 ASN A 34 1 18 HELIX 2 2 ALA A 46 ASN A 50 5 5 HELIX 3 3 ASP A 55 GLY A 68 1 14 HELIX 4 4 ALA A 70 LEU A 74 5 5 HELIX 5 5 SER A 75 ALA A 95 1 21 HELIX 6 6 PRO A 110 ASN A 121 1 12 HELIX 7 7 ASP A 157 ILE A 170 1 14 HELIX 8 8 PHE A 186 ASP A 188 5 3 HELIX 9 9 ARG A 189 PHE A 208 1 20 HELIX 10 10 SER B 17 ASN B 34 1 18 HELIX 11 11 ALA B 46 ASN B 50 5 5 HELIX 12 12 ASP B 55 ALA B 67 1 13 HELIX 13 13 ALA B 70 LEU B 74 5 5 HELIX 14 14 SER B 75 SER B 94 1 20 HELIX 15 15 PRO B 110 ASN B 121 1 12 HELIX 16 16 ASP B 157 ILE B 170 1 14 HELIX 17 17 PHE B 186 ASP B 188 5 3 HELIX 18 18 ARG B 189 PHE B 208 1 20 HELIX 19 19 SER C 17 ASN C 34 1 18 HELIX 20 20 ALA C 46 ASN C 50 5 5 HELIX 21 21 ASP C 55 ALA C 67 1 13 HELIX 22 22 ALA C 70 LEU C 74 5 5 HELIX 23 23 SER C 75 ALA C 95 1 21 HELIX 24 24 PRO C 110 ASN C 121 1 12 HELIX 25 25 ASP C 157 ILE C 170 1 14 HELIX 26 26 PHE C 186 ASP C 188 5 3 HELIX 27 27 ARG C 189 PHE C 208 1 20 HELIX 28 28 SER D 17 ASN D 34 1 18 HELIX 29 29 ALA D 46 ASN D 50 5 5 HELIX 30 30 ASP D 55 ALA D 67 1 13 HELIX 31 31 ALA D 70 LEU D 74 5 5 HELIX 32 32 SER D 75 ALA D 95 1 21 HELIX 33 33 PRO D 110 ASN D 121 1 12 HELIX 34 34 ASP D 157 ILE D 170 1 14 HELIX 35 35 PHE D 186 ASP D 188 5 3 HELIX 36 36 ARG D 189 PHE D 208 1 20 SHEET 1 A 5 GLU A 38 ASP A 43 0 SHEET 2 A 5 LYS A 3 LYS A 8 1 N VAL A 6 O GLU A 40 SHEET 3 A 5 LYS A 97 PRO A 103 1 O VAL A 99 N VAL A 7 SHEET 4 A 5 LYS A 142 ASN A 149 1 O ILE A 146 N ILE A 100 SHEET 5 A 5 GLN A 174 GLU A 181 1 O ASP A 176 N HIS A 145 SHEET 1 B 2 PHE A 127 THR A 130 0 SHEET 2 B 2 GLY A 133 PRO A 136 -1 O LYS A 135 N GLN A 128 SHEET 1 C 5 GLU B 38 ASP B 43 0 SHEET 2 C 5 LYS B 3 LYS B 8 1 N VAL B 6 O LEU B 42 SHEET 3 C 5 LYS B 97 PRO B 103 1 O VAL B 99 N VAL B 7 SHEET 4 C 5 LYS B 142 ASN B 149 1 O ILE B 146 N ILE B 100 SHEET 5 C 5 GLN B 174 GLU B 181 1 O ASP B 176 N ALA B 143 SHEET 1 D 2 PHE B 127 GLN B 128 0 SHEET 2 D 2 LYS B 135 PRO B 136 -1 O LYS B 135 N GLN B 128 SHEET 1 E 5 GLU C 38 ASP C 43 0 SHEET 2 E 5 LYS C 3 LYS C 8 1 N LEU C 4 O GLU C 38 SHEET 3 E 5 LYS C 97 PRO C 103 1 O LYS C 97 N LEU C 5 SHEET 4 E 5 LYS C 142 ASN C 149 1 O ILE C 146 N ILE C 100 SHEET 5 E 5 GLN C 174 GLU C 181 1 O ASP C 176 N ALA C 143 SHEET 1 F 2 PHE C 127 GLN C 128 0 SHEET 2 F 2 LYS C 135 PRO C 136 -1 O LYS C 135 N GLN C 128 SHEET 1 G 5 GLU D 38 ASP D 43 0 SHEET 2 G 5 LYS D 3 LYS D 8 1 N LEU D 4 O GLU D 38 SHEET 3 G 5 LYS D 97 PRO D 103 1 O VAL D 99 N VAL D 7 SHEET 4 G 5 LYS D 142 ASN D 149 1 O ILE D 146 N ILE D 100 SHEET 5 G 5 GLN D 174 GLU D 181 1 O ASP D 176 N ALA D 143 SHEET 1 H 2 PHE D 127 THR D 130 0 SHEET 2 H 2 GLY D 133 PRO D 136 -1 O LYS D 135 N GLN D 128 LINK C ASN A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N PRO A 52 1555 1555 1.33 LINK C PRO A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N TRP A 105 1555 1555 1.33 LINK C ALA A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N THR A 199 1555 1555 1.34 LINK C ASN B 50 N MSE B 51 1555 1555 1.32 LINK C MSE B 51 N PRO B 52 1555 1555 1.33 LINK C PRO B 103 N MSE B 104 1555 1555 1.32 LINK C MSE B 104 N TRP B 105 1555 1555 1.34 LINK C ALA B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N THR B 199 1555 1555 1.32 LINK C ASN C 50 N MSE C 51 1555 1555 1.33 LINK C MSE C 51 N PRO C 52 1555 1555 1.33 LINK C PRO C 103 N MSE C 104 1555 1555 1.33 LINK C MSE C 104 N TRP C 105 1555 1555 1.34 LINK C ALA C 197 N MSE C 198 1555 1555 1.32 LINK C MSE C 198 N THR C 199 1555 1555 1.33 LINK C ASN D 50 N MSE D 51 1555 1555 1.33 LINK C MSE D 51 N PRO D 52 1555 1555 1.32 LINK C PRO D 103 N MSE D 104 1555 1555 1.33 LINK C MSE D 104 N TRP D 105 1555 1555 1.34 LINK C ALA D 197 N MSE D 198 1555 1555 1.33 LINK C MSE D 198 N THR D 199 1555 1555 1.32 SITE 1 AC1 19 HIS A 10 SER A 17 ARG A 18 SER A 19 SITE 2 AC1 19 PRO A 103 MSE A 104 TRP A 105 ASN A 106 SITE 3 AC1 19 LEU A 107 SER A 148 GLY A 150 GLY A 151 SITE 4 AC1 19 TYR A 153 ASP A 184 HOH A1210 HOH A1237 SITE 5 AC1 19 HOH A1245 HOH A1262 ILE B 54 SITE 1 AC2 20 ILE A 54 HIS B 10 SER B 17 ARG B 18 SITE 2 AC2 20 SER B 19 PRO B 103 MSE B 104 TRP B 105 SITE 3 AC2 20 ASN B 106 LEU B 107 SER B 148 ASN B 149 SITE 4 AC2 20 GLY B 150 GLY B 151 TYR B 153 ASP B 184 SITE 5 AC2 20 HOH B1204 HOH B1217 HOH B1227 HOH B1252 SITE 1 AC3 20 HIS C 10 SER C 17 ARG C 18 SER C 19 SITE 2 AC3 20 PRO C 103 MSE C 104 TRP C 105 ASN C 106 SITE 3 AC3 20 LEU C 107 SER C 148 ASN C 149 GLY C 150 SITE 4 AC3 20 GLY C 151 TYR C 153 ASP C 184 HOH C1204 SITE 5 AC3 20 HOH C1219 HOH C1258 HOH C1297 ILE D 54 SITE 1 AC4 17 HIS D 10 SER D 17 ARG D 18 SER D 19 SITE 2 AC4 17 PRO D 103 MSE D 104 TRP D 105 ASN D 106 SITE 3 AC4 17 LEU D 107 SER D 148 ASN D 149 GLY D 150 SITE 4 AC4 17 GLY D 151 TYR D 153 ASP D 184 HOH D1223 SITE 5 AC4 17 HOH D1271 CRYST1 98.038 99.629 106.737 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009369 0.00000