data_2HQB # _entry.id 2HQB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HQB RCSB RCSB038635 WWPDB D_1000038635 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id BSGCAIR31267 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HQB _pdbx_database_status.recvd_initial_deposition_date 2006-07-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, Q.S.' 1 'Berkeley Structural Genomics Center (BSGC)' 2 # _citation.id primary _citation.title 'Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans.' _citation.journal_abbrev Proteins _citation.journal_volume 69 _citation.page_first 409 _citation.page_last 414 _citation.year 2007 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17636568 _citation.pdbx_database_id_DOI 10.1002/prot.21292 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xu, Q.S.' 1 primary 'Ankoudinova, I.' 2 primary 'Lou, Y.' 3 primary 'Yokota, H.' 4 primary 'Kim, R.' 5 primary 'Kim, S.H.' 6 # _cell.entry_id 2HQB _cell.length_a 90.117 _cell.length_b 90.117 _cell.length_c 242.826 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HQB _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional activator of comK gene' 32899.359 1 ? ? ? ? 2 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGGGGG(MSE)VGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAE YFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYA(MSE)GYFGG(MSE)VAAS(MSE)SETHKVGVIAAFPWQPEVEGF VDGAKY(MSE)NESEAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGS TILTSTVQHVDDLYVLVAKRFQEGKLESGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPHEEER ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGGGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST IHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNESEAFVRY VGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKR FQEGKLESGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPHEEER ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier BSGCAIR31267 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLY n 1 4 GLY n 1 5 GLY n 1 6 GLY n 1 7 MSE n 1 8 VAL n 1 9 GLY n 1 10 LEU n 1 11 LEU n 1 12 VAL n 1 13 GLU n 1 14 ASP n 1 15 THR n 1 16 ILE n 1 17 ASP n 1 18 ASP n 1 19 GLN n 1 20 GLY n 1 21 TRP n 1 22 ASN n 1 23 ARG n 1 24 LYS n 1 25 ALA n 1 26 TYR n 1 27 GLU n 1 28 GLY n 1 29 LEU n 1 30 LEU n 1 31 ASN n 1 32 ILE n 1 33 HIS n 1 34 SER n 1 35 ASN n 1 36 LEU n 1 37 ASP n 1 38 VAL n 1 39 ASP n 1 40 VAL n 1 41 VAL n 1 42 LEU n 1 43 GLU n 1 44 GLU n 1 45 GLY n 1 46 VAL n 1 47 ASN n 1 48 SER n 1 49 GLU n 1 50 GLN n 1 51 LYS n 1 52 ALA n 1 53 HIS n 1 54 ARG n 1 55 ARG n 1 56 ILE n 1 57 LYS n 1 58 GLU n 1 59 LEU n 1 60 VAL n 1 61 ASP n 1 62 GLY n 1 63 GLY n 1 64 VAL n 1 65 ASN n 1 66 LEU n 1 67 ILE n 1 68 PHE n 1 69 GLY n 1 70 HIS n 1 71 GLY n 1 72 HIS n 1 73 ALA n 1 74 PHE n 1 75 ALA n 1 76 GLU n 1 77 TYR n 1 78 PHE n 1 79 SER n 1 80 THR n 1 81 ILE n 1 82 HIS n 1 83 ASN n 1 84 GLN n 1 85 TYR n 1 86 PRO n 1 87 ASP n 1 88 VAL n 1 89 HIS n 1 90 PHE n 1 91 VAL n 1 92 SER n 1 93 PHE n 1 94 ASN n 1 95 GLY n 1 96 GLU n 1 97 VAL n 1 98 LYS n 1 99 GLY n 1 100 GLU n 1 101 ASN n 1 102 ILE n 1 103 THR n 1 104 SER n 1 105 LEU n 1 106 HIS n 1 107 PHE n 1 108 GLU n 1 109 GLY n 1 110 TYR n 1 111 ALA n 1 112 MSE n 1 113 GLY n 1 114 TYR n 1 115 PHE n 1 116 GLY n 1 117 GLY n 1 118 MSE n 1 119 VAL n 1 120 ALA n 1 121 ALA n 1 122 SER n 1 123 MSE n 1 124 SER n 1 125 GLU n 1 126 THR n 1 127 HIS n 1 128 LYS n 1 129 VAL n 1 130 GLY n 1 131 VAL n 1 132 ILE n 1 133 ALA n 1 134 ALA n 1 135 PHE n 1 136 PRO n 1 137 TRP n 1 138 GLN n 1 139 PRO n 1 140 GLU n 1 141 VAL n 1 142 GLU n 1 143 GLY n 1 144 PHE n 1 145 VAL n 1 146 ASP n 1 147 GLY n 1 148 ALA n 1 149 LYS n 1 150 TYR n 1 151 MSE n 1 152 ASN n 1 153 GLU n 1 154 SER n 1 155 GLU n 1 156 ALA n 1 157 PHE n 1 158 VAL n 1 159 ARG n 1 160 TYR n 1 161 VAL n 1 162 GLY n 1 163 GLU n 1 164 TRP n 1 165 THR n 1 166 ASP n 1 167 ALA n 1 168 ASP n 1 169 LYS n 1 170 ALA n 1 171 LEU n 1 172 GLU n 1 173 LEU n 1 174 PHE n 1 175 GLN n 1 176 GLU n 1 177 LEU n 1 178 GLN n 1 179 LYS n 1 180 GLU n 1 181 GLN n 1 182 VAL n 1 183 ASP n 1 184 VAL n 1 185 PHE n 1 186 TYR n 1 187 PRO n 1 188 ALA n 1 189 GLY n 1 190 ASP n 1 191 GLY n 1 192 TYR n 1 193 HIS n 1 194 VAL n 1 195 PRO n 1 196 VAL n 1 197 VAL n 1 198 GLU n 1 199 ALA n 1 200 ILE n 1 201 LYS n 1 202 ASP n 1 203 GLN n 1 204 GLY n 1 205 ASP n 1 206 PHE n 1 207 ALA n 1 208 ILE n 1 209 GLY n 1 210 TYR n 1 211 VAL n 1 212 GLY n 1 213 ASP n 1 214 GLN n 1 215 ALA n 1 216 ASP n 1 217 LEU n 1 218 GLY n 1 219 GLY n 1 220 SER n 1 221 THR n 1 222 ILE n 1 223 LEU n 1 224 THR n 1 225 SER n 1 226 THR n 1 227 VAL n 1 228 GLN n 1 229 HIS n 1 230 VAL n 1 231 ASP n 1 232 ASP n 1 233 LEU n 1 234 TYR n 1 235 VAL n 1 236 LEU n 1 237 VAL n 1 238 ALA n 1 239 LYS n 1 240 ARG n 1 241 PHE n 1 242 GLN n 1 243 GLU n 1 244 GLY n 1 245 LYS n 1 246 LEU n 1 247 GLU n 1 248 SER n 1 249 GLY n 1 250 ASN n 1 251 LEU n 1 252 TYR n 1 253 TYR n 1 254 ASP n 1 255 PHE n 1 256 GLN n 1 257 ASP n 1 258 GLY n 1 259 VAL n 1 260 VAL n 1 261 SER n 1 262 LEU n 1 263 GLY n 1 264 GLU n 1 265 PHE n 1 266 SER n 1 267 SER n 1 268 VAL n 1 269 VAL n 1 270 PRO n 1 271 ASP n 1 272 GLU n 1 273 VAL n 1 274 ARG n 1 275 GLU n 1 276 GLN n 1 277 ILE n 1 278 THR n 1 279 ASP n 1 280 ALA n 1 281 ILE n 1 282 SER n 1 283 THR n 1 284 TYR n 1 285 ILE n 1 286 GLN n 1 287 THR n 1 288 GLY n 1 289 GLN n 1 290 PHE n 1 291 PRO n 1 292 HIS n 1 293 GLU n 1 294 GLU n 1 295 GLU n 1 296 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene med _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pLIC.B3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9K8W3_BACHD _struct_ref.pdbx_db_accession Q9K8W3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYP DVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNESEAFVRYVGEWTD ADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKRFQEGKL ESGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPHEEER ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HQB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 296 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9K8W3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 290 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 290 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HQB GLY A 1 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' -5 1 1 2HQB GLY A 2 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' -4 2 1 2HQB GLY A 3 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' -3 3 1 2HQB GLY A 4 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' -2 4 1 2HQB GLY A 5 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' -1 5 1 2HQB GLY A 6 ? UNP Q9K8W3 ? ? 'EXPRESSION TAG' 0 6 1 2HQB MSE A 7 ? UNP Q9K8W3 MET 1 'MODIFIED RESIDUE' 1 7 1 2HQB MSE A 112 ? UNP Q9K8W3 MET 106 'MODIFIED RESIDUE' 106 8 1 2HQB MSE A 118 ? UNP Q9K8W3 MET 112 'MODIFIED RESIDUE' 112 9 1 2HQB MSE A 123 ? UNP Q9K8W3 MET 117 'MODIFIED RESIDUE' 117 10 1 2HQB MSE A 151 ? UNP Q9K8W3 MET 145 'MODIFIED RESIDUE' 145 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HQB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.32 _exptl_crystal.density_percent_sol 71.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris, pH 8.5, 2.2M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-04-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97964 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97964 # _reflns.entry_id 2HQB _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 42.2 _reflns.d_resolution_high 2.70 _reflns.number_obs 15980 _reflns.number_all 15980 _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI 19.3 _reflns.B_iso_Wilson_estimate 44.7 _reflns.pdbx_redundancy 9.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs 0.358 _reflns_shell.pdbx_Rsym_value 0.358 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1540 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HQB _refine.ls_number_reflns_obs 15976 _refine.ls_number_reflns_all 15976 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2564103.14 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.24 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_all 0.241 _refine.ls_R_factor_R_work 0.237 _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1571 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 58.7 _refine.aniso_B[1][1] 10.87 _refine.aniso_B[2][2] 10.87 _refine.aniso_B[3][3] -21.73 _refine.aniso_B[1][2] 16.30 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.355405 _refine.solvent_model_param_bsol 52.0148 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HQB _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.60 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.67 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2217 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 2229 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 42.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.88 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.66 2.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.77 4.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 8.23 4.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.14 6.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.80 _refine_ls_shell.number_reflns_R_work 1397 _refine_ls_shell.R_factor_R_work 0.372 _refine_ls_shell.percent_reflns_obs 95.1 _refine_ls_shell.R_factor_R_free 0.415 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 9.3 _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1540 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2HQB _struct.title 'Crystal Structure of a Transcriptional Activator of comK gene from Bacillus halodurans' _struct.pdbx_descriptor 'Transcriptional activator of comK gene' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HQB _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Berkeley Structure Genomics Center Target 1957B, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center, BSGC, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 22 ? LEU A 36 ? ASN A 16 LEU A 30 1 ? 15 HELX_P HELX_P2 2 SER A 48 ? GLY A 62 ? SER A 42 GLY A 56 1 ? 15 HELX_P HELX_P3 3 HIS A 72 ? THR A 80 ? HIS A 66 THR A 74 1 ? 9 HELX_P HELX_P4 4 GLY A 109 ? MSE A 123 ? GLY A 103 MSE A 117 1 ? 15 HELX_P HELX_P5 5 GLN A 138 ? MSE A 151 ? GLN A 132 MSE A 145 1 ? 14 HELX_P HELX_P6 6 ASP A 166 ? LYS A 179 ? ASP A 160 LYS A 173 1 ? 14 HELX_P HELX_P7 7 TYR A 192 ? GLY A 204 ? TYR A 186 GLY A 198 1 ? 13 HELX_P HELX_P8 8 HIS A 229 ? PHE A 241 ? HIS A 223 PHE A 235 1 ? 13 HELX_P HELX_P9 9 ASP A 254 ? GLY A 258 ? ASP A 248 GLY A 252 5 ? 5 HELX_P HELX_P10 10 PRO A 270 ? THR A 287 ? PRO A 264 THR A 281 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 6 C ? ? ? 1_555 A MSE 7 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 7 C ? ? ? 1_555 A VAL 8 N ? ? A MSE 1 A VAL 2 1_555 ? ? ? ? ? ? ? 1.339 ? covale3 covale ? ? A ALA 111 C ? ? ? 1_555 A MSE 112 N ? ? A ALA 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 112 C ? ? ? 1_555 A GLY 113 N ? ? A MSE 106 A GLY 107 1_555 ? ? ? ? ? ? ? 1.323 ? covale5 covale ? ? A GLY 117 C ? ? ? 1_555 A MSE 118 N ? ? A GLY 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A MSE 118 C ? ? ? 1_555 A VAL 119 N ? ? A MSE 112 A VAL 113 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A SER 122 C ? ? ? 1_555 A MSE 123 N ? ? A SER 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.317 ? covale8 covale ? ? A MSE 123 C ? ? ? 1_555 A SER 124 N ? ? A MSE 117 A SER 118 1_555 ? ? ? ? ? ? ? 1.324 ? covale9 covale ? ? A TYR 150 C ? ? ? 1_555 A MSE 151 N ? ? A TYR 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.316 ? covale10 covale ? ? A MSE 151 C ? ? ? 1_555 A ASN 152 N ? ? A MSE 145 A ASN 146 1_555 ? ? ? ? ? ? ? 1.316 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 39 ? GLU A 43 ? ASP A 33 GLU A 37 A 2 MSE A 7 ? LEU A 11 ? MSE A 1 LEU A 5 A 3 LEU A 66 ? GLY A 69 ? LEU A 60 GLY A 63 A 4 HIS A 89 ? PHE A 93 ? HIS A 83 PHE A 87 A 5 ILE A 102 ? PHE A 107 ? ILE A 96 PHE A 101 A 6 GLY A 249 ? TYR A 253 ? GLY A 243 TYR A 247 B 1 GLU A 155 ? TYR A 160 ? GLU A 149 TYR A 154 B 2 LYS A 128 ? ALA A 133 ? LYS A 122 ALA A 127 B 3 VAL A 184 ? TYR A 186 ? VAL A 178 TYR A 180 B 4 PHE A 206 ? VAL A 211 ? PHE A 200 VAL A 205 B 5 ILE A 222 ? GLN A 228 ? ILE A 216 GLN A 222 B 6 VAL A 260 ? LEU A 262 ? VAL A 254 LEU A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 43 ? O GLU A 37 N LEU A 10 ? N LEU A 4 A 2 3 N GLY A 9 ? N GLY A 3 O PHE A 68 ? O PHE A 62 A 3 4 N ILE A 67 ? N ILE A 61 O VAL A 91 ? O VAL A 85 A 4 5 N PHE A 90 ? N PHE A 84 O THR A 103 ? O THR A 97 A 5 6 N HIS A 106 ? N HIS A 100 O TYR A 253 ? O TYR A 247 B 1 2 O PHE A 157 ? O PHE A 151 N VAL A 131 ? N VAL A 125 B 2 3 N GLY A 130 ? N GLY A 124 O VAL A 184 ? O VAL A 178 B 3 4 N PHE A 185 ? N PHE A 179 O PHE A 206 ? O PHE A 200 B 4 5 N GLY A 209 ? N GLY A 203 O THR A 224 ? O THR A 218 B 5 6 N VAL A 227 ? N VAL A 221 O SER A 261 ? O SER A 255 # _database_PDB_matrix.entry_id 2HQB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HQB _atom_sites.fract_transf_matrix[1][1] 0.011097 _atom_sites.fract_transf_matrix[1][2] 0.006407 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012813 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 GLY 2 -4 ? ? ? A . n A 1 3 GLY 3 -3 ? ? ? A . n A 1 4 GLY 4 -2 ? ? ? A . n A 1 5 GLY 5 -1 ? ? ? A . n A 1 6 GLY 6 0 0 GLY GLY A . n A 1 7 MSE 7 1 1 MSE MSE A . n A 1 8 VAL 8 2 2 VAL VAL A . n A 1 9 GLY 9 3 3 GLY GLY A . n A 1 10 LEU 10 4 4 LEU LEU A . n A 1 11 LEU 11 5 5 LEU LEU A . n A 1 12 VAL 12 6 6 VAL VAL A . n A 1 13 GLU 13 7 7 GLU GLU A . n A 1 14 ASP 14 8 8 ASP ASP A . n A 1 15 THR 15 9 9 THR THR A . n A 1 16 ILE 16 10 ? ? ? A . n A 1 17 ASP 17 11 ? ? ? A . n A 1 18 ASP 18 12 ? ? ? A . n A 1 19 GLN 19 13 ? ? ? A . n A 1 20 GLY 20 14 14 GLY GLY A . n A 1 21 TRP 21 15 15 TRP TRP A . n A 1 22 ASN 22 16 16 ASN ASN A . n A 1 23 ARG 23 17 17 ARG ARG A . n A 1 24 LYS 24 18 18 LYS LYS A . n A 1 25 ALA 25 19 19 ALA ALA A . n A 1 26 TYR 26 20 20 TYR TYR A . n A 1 27 GLU 27 21 21 GLU GLU A . n A 1 28 GLY 28 22 22 GLY GLY A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 LEU 30 24 24 LEU LEU A . n A 1 31 ASN 31 25 25 ASN ASN A . n A 1 32 ILE 32 26 26 ILE ILE A . n A 1 33 HIS 33 27 27 HIS HIS A . n A 1 34 SER 34 28 28 SER SER A . n A 1 35 ASN 35 29 29 ASN ASN A . n A 1 36 LEU 36 30 30 LEU LEU A . n A 1 37 ASP 37 31 31 ASP ASP A . n A 1 38 VAL 38 32 32 VAL VAL A . n A 1 39 ASP 39 33 33 ASP ASP A . n A 1 40 VAL 40 34 34 VAL VAL A . n A 1 41 VAL 41 35 35 VAL VAL A . n A 1 42 LEU 42 36 36 LEU LEU A . n A 1 43 GLU 43 37 37 GLU GLU A . n A 1 44 GLU 44 38 38 GLU GLU A . n A 1 45 GLY 45 39 39 GLY GLY A . n A 1 46 VAL 46 40 40 VAL VAL A . n A 1 47 ASN 47 41 41 ASN ASN A . n A 1 48 SER 48 42 42 SER SER A . n A 1 49 GLU 49 43 43 GLU GLU A . n A 1 50 GLN 50 44 44 GLN GLN A . n A 1 51 LYS 51 45 45 LYS LYS A . n A 1 52 ALA 52 46 46 ALA ALA A . n A 1 53 HIS 53 47 47 HIS HIS A . n A 1 54 ARG 54 48 48 ARG ARG A . n A 1 55 ARG 55 49 49 ARG ARG A . n A 1 56 ILE 56 50 50 ILE ILE A . n A 1 57 LYS 57 51 51 LYS LYS A . n A 1 58 GLU 58 52 52 GLU GLU A . n A 1 59 LEU 59 53 53 LEU LEU A . n A 1 60 VAL 60 54 54 VAL VAL A . n A 1 61 ASP 61 55 55 ASP ASP A . n A 1 62 GLY 62 56 56 GLY GLY A . n A 1 63 GLY 63 57 57 GLY GLY A . n A 1 64 VAL 64 58 58 VAL VAL A . n A 1 65 ASN 65 59 59 ASN ASN A . n A 1 66 LEU 66 60 60 LEU LEU A . n A 1 67 ILE 67 61 61 ILE ILE A . n A 1 68 PHE 68 62 62 PHE PHE A . n A 1 69 GLY 69 63 63 GLY GLY A . n A 1 70 HIS 70 64 64 HIS HIS A . n A 1 71 GLY 71 65 65 GLY GLY A . n A 1 72 HIS 72 66 66 HIS HIS A . n A 1 73 ALA 73 67 67 ALA ALA A . n A 1 74 PHE 74 68 68 PHE PHE A . n A 1 75 ALA 75 69 69 ALA ALA A . n A 1 76 GLU 76 70 70 GLU GLU A . n A 1 77 TYR 77 71 71 TYR TYR A . n A 1 78 PHE 78 72 72 PHE PHE A . n A 1 79 SER 79 73 73 SER SER A . n A 1 80 THR 80 74 74 THR THR A . n A 1 81 ILE 81 75 75 ILE ILE A . n A 1 82 HIS 82 76 76 HIS HIS A . n A 1 83 ASN 83 77 77 ASN ASN A . n A 1 84 GLN 84 78 78 GLN GLN A . n A 1 85 TYR 85 79 79 TYR TYR A . n A 1 86 PRO 86 80 80 PRO PRO A . n A 1 87 ASP 87 81 81 ASP ASP A . n A 1 88 VAL 88 82 82 VAL VAL A . n A 1 89 HIS 89 83 83 HIS HIS A . n A 1 90 PHE 90 84 84 PHE PHE A . n A 1 91 VAL 91 85 85 VAL VAL A . n A 1 92 SER 92 86 86 SER SER A . n A 1 93 PHE 93 87 87 PHE PHE A . n A 1 94 ASN 94 88 88 ASN ASN A . n A 1 95 GLY 95 89 89 GLY GLY A . n A 1 96 GLU 96 90 90 GLU GLU A . n A 1 97 VAL 97 91 91 VAL VAL A . n A 1 98 LYS 98 92 92 LYS LYS A . n A 1 99 GLY 99 93 93 GLY GLY A . n A 1 100 GLU 100 94 94 GLU GLU A . n A 1 101 ASN 101 95 95 ASN ASN A . n A 1 102 ILE 102 96 96 ILE ILE A . n A 1 103 THR 103 97 97 THR THR A . n A 1 104 SER 104 98 98 SER SER A . n A 1 105 LEU 105 99 99 LEU LEU A . n A 1 106 HIS 106 100 100 HIS HIS A . n A 1 107 PHE 107 101 101 PHE PHE A . n A 1 108 GLU 108 102 102 GLU GLU A . n A 1 109 GLY 109 103 103 GLY GLY A . n A 1 110 TYR 110 104 104 TYR TYR A . n A 1 111 ALA 111 105 105 ALA ALA A . n A 1 112 MSE 112 106 106 MSE MSE A . n A 1 113 GLY 113 107 107 GLY GLY A . n A 1 114 TYR 114 108 108 TYR TYR A . n A 1 115 PHE 115 109 109 PHE PHE A . n A 1 116 GLY 116 110 110 GLY GLY A . n A 1 117 GLY 117 111 111 GLY GLY A . n A 1 118 MSE 118 112 112 MSE MSE A . n A 1 119 VAL 119 113 113 VAL VAL A . n A 1 120 ALA 120 114 114 ALA ALA A . n A 1 121 ALA 121 115 115 ALA ALA A . n A 1 122 SER 122 116 116 SER SER A . n A 1 123 MSE 123 117 117 MSE MSE A . n A 1 124 SER 124 118 118 SER SER A . n A 1 125 GLU 125 119 119 GLU GLU A . n A 1 126 THR 126 120 120 THR THR A . n A 1 127 HIS 127 121 121 HIS HIS A . n A 1 128 LYS 128 122 122 LYS LYS A . n A 1 129 VAL 129 123 123 VAL VAL A . n A 1 130 GLY 130 124 124 GLY GLY A . n A 1 131 VAL 131 125 125 VAL VAL A . n A 1 132 ILE 132 126 126 ILE ILE A . n A 1 133 ALA 133 127 127 ALA ALA A . n A 1 134 ALA 134 128 128 ALA ALA A . n A 1 135 PHE 135 129 129 PHE PHE A . n A 1 136 PRO 136 130 130 PRO PRO A . n A 1 137 TRP 137 131 131 TRP TRP A . n A 1 138 GLN 138 132 132 GLN GLN A . n A 1 139 PRO 139 133 133 PRO PRO A . n A 1 140 GLU 140 134 134 GLU GLU A . n A 1 141 VAL 141 135 135 VAL VAL A . n A 1 142 GLU 142 136 136 GLU GLU A . n A 1 143 GLY 143 137 137 GLY GLY A . n A 1 144 PHE 144 138 138 PHE PHE A . n A 1 145 VAL 145 139 139 VAL VAL A . n A 1 146 ASP 146 140 140 ASP ASP A . n A 1 147 GLY 147 141 141 GLY GLY A . n A 1 148 ALA 148 142 142 ALA ALA A . n A 1 149 LYS 149 143 143 LYS LYS A . n A 1 150 TYR 150 144 144 TYR TYR A . n A 1 151 MSE 151 145 145 MSE MSE A . n A 1 152 ASN 152 146 146 ASN ASN A . n A 1 153 GLU 153 147 147 GLU GLU A . n A 1 154 SER 154 148 148 SER SER A . n A 1 155 GLU 155 149 149 GLU GLU A . n A 1 156 ALA 156 150 150 ALA ALA A . n A 1 157 PHE 157 151 151 PHE PHE A . n A 1 158 VAL 158 152 152 VAL VAL A . n A 1 159 ARG 159 153 153 ARG ARG A . n A 1 160 TYR 160 154 154 TYR TYR A . n A 1 161 VAL 161 155 155 VAL VAL A . n A 1 162 GLY 162 156 156 GLY GLY A . n A 1 163 GLU 163 157 157 GLU GLU A . n A 1 164 TRP 164 158 158 TRP TRP A . n A 1 165 THR 165 159 159 THR THR A . n A 1 166 ASP 166 160 160 ASP ASP A . n A 1 167 ALA 167 161 161 ALA ALA A . n A 1 168 ASP 168 162 162 ASP ASP A . n A 1 169 LYS 169 163 163 LYS LYS A . n A 1 170 ALA 170 164 164 ALA ALA A . n A 1 171 LEU 171 165 165 LEU LEU A . n A 1 172 GLU 172 166 166 GLU GLU A . n A 1 173 LEU 173 167 167 LEU LEU A . n A 1 174 PHE 174 168 168 PHE PHE A . n A 1 175 GLN 175 169 169 GLN GLN A . n A 1 176 GLU 176 170 170 GLU GLU A . n A 1 177 LEU 177 171 171 LEU LEU A . n A 1 178 GLN 178 172 172 GLN GLN A . n A 1 179 LYS 179 173 173 LYS LYS A . n A 1 180 GLU 180 174 174 GLU GLU A . n A 1 181 GLN 181 175 175 GLN GLN A . n A 1 182 VAL 182 176 176 VAL VAL A . n A 1 183 ASP 183 177 177 ASP ASP A . n A 1 184 VAL 184 178 178 VAL VAL A . n A 1 185 PHE 185 179 179 PHE PHE A . n A 1 186 TYR 186 180 180 TYR TYR A . n A 1 187 PRO 187 181 181 PRO PRO A . n A 1 188 ALA 188 182 182 ALA ALA A . n A 1 189 GLY 189 183 183 GLY GLY A . n A 1 190 ASP 190 184 184 ASP ASP A . n A 1 191 GLY 191 185 185 GLY GLY A . n A 1 192 TYR 192 186 186 TYR TYR A . n A 1 193 HIS 193 187 187 HIS HIS A . n A 1 194 VAL 194 188 188 VAL VAL A . n A 1 195 PRO 195 189 189 PRO PRO A . n A 1 196 VAL 196 190 190 VAL VAL A . n A 1 197 VAL 197 191 191 VAL VAL A . n A 1 198 GLU 198 192 192 GLU GLU A . n A 1 199 ALA 199 193 193 ALA ALA A . n A 1 200 ILE 200 194 194 ILE ILE A . n A 1 201 LYS 201 195 195 LYS LYS A . n A 1 202 ASP 202 196 196 ASP ASP A . n A 1 203 GLN 203 197 197 GLN GLN A . n A 1 204 GLY 204 198 198 GLY GLY A . n A 1 205 ASP 205 199 199 ASP ASP A . n A 1 206 PHE 206 200 200 PHE PHE A . n A 1 207 ALA 207 201 201 ALA ALA A . n A 1 208 ILE 208 202 202 ILE ILE A . n A 1 209 GLY 209 203 203 GLY GLY A . n A 1 210 TYR 210 204 204 TYR TYR A . n A 1 211 VAL 211 205 205 VAL VAL A . n A 1 212 GLY 212 206 206 GLY GLY A . n A 1 213 ASP 213 207 207 ASP ASP A . n A 1 214 GLN 214 208 208 GLN GLN A . n A 1 215 ALA 215 209 209 ALA ALA A . n A 1 216 ASP 216 210 210 ASP ASP A . n A 1 217 LEU 217 211 211 LEU LEU A . n A 1 218 GLY 218 212 212 GLY GLY A . n A 1 219 GLY 219 213 213 GLY GLY A . n A 1 220 SER 220 214 214 SER SER A . n A 1 221 THR 221 215 215 THR THR A . n A 1 222 ILE 222 216 216 ILE ILE A . n A 1 223 LEU 223 217 217 LEU LEU A . n A 1 224 THR 224 218 218 THR THR A . n A 1 225 SER 225 219 219 SER SER A . n A 1 226 THR 226 220 220 THR THR A . n A 1 227 VAL 227 221 221 VAL VAL A . n A 1 228 GLN 228 222 222 GLN GLN A . n A 1 229 HIS 229 223 223 HIS HIS A . n A 1 230 VAL 230 224 224 VAL VAL A . n A 1 231 ASP 231 225 225 ASP ASP A . n A 1 232 ASP 232 226 226 ASP ASP A . n A 1 233 LEU 233 227 227 LEU LEU A . n A 1 234 TYR 234 228 228 TYR TYR A . n A 1 235 VAL 235 229 229 VAL VAL A . n A 1 236 LEU 236 230 230 LEU LEU A . n A 1 237 VAL 237 231 231 VAL VAL A . n A 1 238 ALA 238 232 232 ALA ALA A . n A 1 239 LYS 239 233 233 LYS LYS A . n A 1 240 ARG 240 234 234 ARG ARG A . n A 1 241 PHE 241 235 235 PHE PHE A . n A 1 242 GLN 242 236 236 GLN GLN A . n A 1 243 GLU 243 237 237 GLU GLU A . n A 1 244 GLY 244 238 238 GLY GLY A . n A 1 245 LYS 245 239 239 LYS LYS A . n A 1 246 LEU 246 240 240 LEU LEU A . n A 1 247 GLU 247 241 241 GLU GLU A . n A 1 248 SER 248 242 242 SER SER A . n A 1 249 GLY 249 243 243 GLY GLY A . n A 1 250 ASN 250 244 244 ASN ASN A . n A 1 251 LEU 251 245 245 LEU LEU A . n A 1 252 TYR 252 246 246 TYR TYR A . n A 1 253 TYR 253 247 247 TYR TYR A . n A 1 254 ASP 254 248 248 ASP ASP A . n A 1 255 PHE 255 249 249 PHE PHE A . n A 1 256 GLN 256 250 250 GLN GLN A . n A 1 257 ASP 257 251 251 ASP ASP A . n A 1 258 GLY 258 252 252 GLY GLY A . n A 1 259 VAL 259 253 253 VAL VAL A . n A 1 260 VAL 260 254 254 VAL VAL A . n A 1 261 SER 261 255 255 SER SER A . n A 1 262 LEU 262 256 256 LEU LEU A . n A 1 263 GLY 263 257 257 GLY GLY A . n A 1 264 GLU 264 258 258 GLU GLU A . n A 1 265 PHE 265 259 259 PHE PHE A . n A 1 266 SER 266 260 260 SER SER A . n A 1 267 SER 267 261 261 SER SER A . n A 1 268 VAL 268 262 262 VAL VAL A . n A 1 269 VAL 269 263 263 VAL VAL A . n A 1 270 PRO 270 264 264 PRO PRO A . n A 1 271 ASP 271 265 265 ASP ASP A . n A 1 272 GLU 272 266 266 GLU GLU A . n A 1 273 VAL 273 267 267 VAL VAL A . n A 1 274 ARG 274 268 268 ARG ARG A . n A 1 275 GLU 275 269 269 GLU GLU A . n A 1 276 GLN 276 270 270 GLN GLN A . n A 1 277 ILE 277 271 271 ILE ILE A . n A 1 278 THR 278 272 272 THR THR A . n A 1 279 ASP 279 273 273 ASP ASP A . n A 1 280 ALA 280 274 274 ALA ALA A . n A 1 281 ILE 281 275 275 ILE ILE A . n A 1 282 SER 282 276 276 SER SER A . n A 1 283 THR 283 277 277 THR THR A . n A 1 284 TYR 284 278 278 TYR TYR A . n A 1 285 ILE 285 279 279 ILE ILE A . n A 1 286 GLN 286 280 280 GLN GLN A . n A 1 287 THR 287 281 281 THR THR A . n A 1 288 GLY 288 282 282 GLY GLY A . n A 1 289 GLN 289 283 283 GLN GLN A . n A 1 290 PHE 290 284 284 PHE PHE A . n A 1 291 PRO 291 285 285 PRO PRO A . n A 1 292 HIS 292 286 286 HIS HIS A . n A 1 293 GLU 293 287 ? ? ? A . n A 1 294 GLU 294 288 ? ? ? A . n A 1 295 GLU 295 289 ? ? ? A . n A 1 296 ARG 296 290 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Berkeley Structural Genomics Center' _pdbx_SG_project.initial_of_center BSGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 301 HOH HOH A . B 2 HOH 2 302 302 HOH HOH A . B 2 HOH 3 303 303 HOH HOH A . B 2 HOH 4 304 304 HOH HOH A . B 2 HOH 5 305 305 HOH HOH A . B 2 HOH 6 306 306 HOH HOH A . B 2 HOH 7 307 307 HOH HOH A . B 2 HOH 8 308 308 HOH HOH A . B 2 HOH 9 309 309 HOH HOH A . B 2 HOH 10 310 310 HOH HOH A . B 2 HOH 11 311 311 HOH HOH A . B 2 HOH 12 312 312 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 7 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 112 A MSE 106 ? MET SELENOMETHIONINE 3 A MSE 118 A MSE 112 ? MET SELENOMETHIONINE 4 A MSE 123 A MSE 117 ? MET SELENOMETHIONINE 5 A MSE 151 A MSE 145 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-29 2 'Structure model' 1 1 2007-10-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 212 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 212 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 212 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 93.25 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -19.85 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 15 ? ? -51.21 108.64 2 1 ASN A 16 ? ? -64.92 0.53 3 1 ILE A 75 ? ? -153.24 -10.32 4 1 ASN A 88 ? ? 89.09 -6.56 5 1 ASN A 95 ? ? -98.45 33.40 6 1 ASN A 146 ? ? 163.41 -16.99 7 1 LYS A 173 ? ? -68.77 29.95 8 1 GLU A 174 ? ? -141.24 16.65 9 1 VAL A 205 ? ? 60.32 -16.35 10 1 GLN A 208 ? ? 40.85 -3.18 11 1 LEU A 211 ? ? -108.60 67.14 12 1 SER A 214 ? ? 68.27 -8.78 13 1 GLU A 237 ? ? -78.84 24.91 14 1 LYS A 239 ? ? -89.97 41.25 15 1 ARG A 268 ? ? -57.59 -71.50 16 1 THR A 281 ? ? -67.68 -74.60 17 1 PRO A 285 ? ? -48.92 42.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A GLY -4 ? A GLY 2 3 1 Y 1 A GLY -3 ? A GLY 3 4 1 Y 1 A GLY -2 ? A GLY 4 5 1 Y 1 A GLY -1 ? A GLY 5 6 1 Y 1 A ILE 10 ? A ILE 16 7 1 Y 1 A ASP 11 ? A ASP 17 8 1 Y 1 A ASP 12 ? A ASP 18 9 1 Y 1 A GLN 13 ? A GLN 19 10 1 Y 1 A GLU 287 ? A GLU 293 11 1 Y 1 A GLU 288 ? A GLU 294 12 1 Y 1 A GLU 289 ? A GLU 295 13 1 Y 1 A ARG 290 ? A ARG 296 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #