HEADER TRANSCRIPTION 18-JUL-06 2HQE TITLE CRYSTAL STRUCTURE OF HUMAN P100 TUDOR DOMAIN: LARGE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: P100 CO-ACTIVATOR TUDOR DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LARGE FRAGMENT, RESIDUES 665-910; COMPND 5 SYNONYM: P100 CO- ACTIVATOR, 100 KDA COACTIVATOR, EBNA2 COACTIVATOR COMPND 6 P100; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SND1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS P100 TUDOR DOMAIN, LARGE FRAGMENT, HUMAN, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.SHAH,M.ZHAO,C.CHENG,H.XU,J.YANG,O.SILVENNOINEN,Z.J.LIU,B.C.WANG, AUTHOR 2 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 3 30-AUG-23 2HQE 1 SEQADV REVDAT 2 24-FEB-09 2HQE 1 VERSN REVDAT 1 03-JUL-07 2HQE 0 JRNL AUTH N.SHAH,M.ZHAO,C.CHENG,H.XU,J.YANG,O.SILVENNOINEN,B.C.WANG, JRNL AUTH 2 Z.J.LIU JRNL TITL CRYSTAL STRUCTURE OF A LARGE FRAGMENT OF THE HUMAN P100 JRNL TITL 2 TUDOR DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2493 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3381 ; 1.080 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.123 ;23.520 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;13.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;10.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1933 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1062 ; 0.219 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1708 ; 0.319 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.177 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.167 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.122 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 1.159 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2465 ; 1.837 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 1.128 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 916 ; 1.728 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81600 REMARK 200 FOR SHELL : 12.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICOR LITER DROPS CONTAINING EQUAL REMARK 280 VOLUMES OF PROTEIN SOLUTION (10.0 MG/ML) AND PRECIPITATE REMARK 280 SOLUTION (20% PEG 8000, 100.0 MM PHOSPHATE, 0.1M HEPES), PH 4.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.96550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.63950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.70650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.63950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.96550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.70650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 640 REMARK 465 VAL A 641 REMARK 465 GLU A 642 REMARK 465 GLU A 643 REMARK 465 VAL A 644 REMARK 465 MET A 645 REMARK 465 PRO A 646 REMARK 465 VAL A 647 REMARK 465 LEU A 648 REMARK 465 GLU A 649 REMARK 465 GLU A 650 REMARK 465 LYS A 651 REMARK 465 GLU A 652 REMARK 465 ARG A 653 REMARK 465 GLY A 871 REMARK 465 ASP A 872 REMARK 465 PHE A 873 REMARK 465 ARG A 874 REMARK 465 ALA A 875 REMARK 465 ASP A 876 REMARK 465 ASP A 877 REMARK 465 ALA A 878 REMARK 465 ASP A 879 REMARK 465 GLU A 880 REMARK 465 PHE A 881 REMARK 465 GLY A 882 REMARK 465 TYR A 883 REMARK 465 SER A 884 REMARK 465 ARG A 885 REMARK 465 PRO B 640 REMARK 465 VAL B 641 REMARK 465 GLU B 642 REMARK 465 GLU B 643 REMARK 465 VAL B 644 REMARK 465 MET B 645 REMARK 465 PRO B 646 REMARK 465 VAL B 647 REMARK 465 LEU B 648 REMARK 465 GLU B 649 REMARK 465 GLU B 650 REMARK 465 LYS B 651 REMARK 465 GLU B 652 REMARK 465 ARG B 653 REMARK 465 SER B 654 REMARK 465 ALA B 655 REMARK 465 SER B 656 REMARK 465 TYR B 657 REMARK 465 LYS B 658 REMARK 465 PRO B 659 REMARK 465 VAL B 660 REMARK 465 PHE B 661 REMARK 465 VAL B 662 REMARK 465 THR B 663 REMARK 465 GLU B 664 REMARK 465 ILE B 665 REMARK 465 THR B 666 REMARK 465 ASP B 667 REMARK 465 ASP B 668 REMARK 465 LEU B 669 REMARK 465 HIS B 670 REMARK 465 PHE B 671 REMARK 465 TYR B 672 REMARK 465 VAL B 673 REMARK 465 GLN B 674 REMARK 465 ASP B 675 REMARK 465 VAL B 676 REMARK 465 GLU B 677 REMARK 465 THR B 678 REMARK 465 GLY B 679 REMARK 465 VAL B 699 REMARK 465 GLU B 700 REMARK 465 GLY B 701 REMARK 465 SER B 702 REMARK 465 TYR B 771 REMARK 465 ALA B 772 REMARK 465 PHE B 773 REMARK 465 ALA B 774 REMARK 465 PHE B 775 REMARK 465 ILE B 776 REMARK 465 GLN B 777 REMARK 465 VAL B 778 REMARK 465 PRO B 779 REMARK 465 GLN B 780 REMARK 465 ASP B 781 REMARK 465 ASP B 782 REMARK 465 ASP B 783 REMARK 465 ALA B 784 REMARK 465 ARG B 785 REMARK 465 THR B 786 REMARK 465 ASP B 787 REMARK 465 ALA B 788 REMARK 465 VAL B 789 REMARK 465 ASP B 790 REMARK 465 SER B 791 REMARK 465 VAL B 792 REMARK 465 VAL B 793 REMARK 465 ARG B 794 REMARK 465 ASP B 795 REMARK 465 ILE B 796 REMARK 465 GLN B 797 REMARK 465 ASN B 798 REMARK 465 THR B 799 REMARK 465 GLN B 800 REMARK 465 CYS B 801 REMARK 465 LEU B 802 REMARK 465 LEU B 803 REMARK 465 ASN B 804 REMARK 465 VAL B 805 REMARK 465 GLU B 806 REMARK 465 HIS B 807 REMARK 465 LEU B 808 REMARK 465 SER B 809 REMARK 465 ALA B 810 REMARK 465 GLY B 811 REMARK 465 CYS B 812 REMARK 465 PRO B 813 REMARK 465 HIS B 814 REMARK 465 VAL B 815 REMARK 465 THR B 816 REMARK 465 LEU B 817 REMARK 465 GLN B 818 REMARK 465 PHE B 819 REMARK 465 ALA B 820 REMARK 465 ASP B 821 REMARK 465 SER B 822 REMARK 465 LYS B 823 REMARK 465 GLY B 824 REMARK 465 ASP B 825 REMARK 465 VAL B 826 REMARK 465 GLY B 827 REMARK 465 LEU B 828 REMARK 465 GLY B 829 REMARK 465 LEU B 830 REMARK 465 VAL B 831 REMARK 465 LYS B 832 REMARK 465 GLU B 833 REMARK 465 GLY B 834 REMARK 465 LEU B 835 REMARK 465 VAL B 836 REMARK 465 MET B 837 REMARK 465 VAL B 838 REMARK 465 GLU B 839 REMARK 465 VAL B 840 REMARK 465 ARG B 841 REMARK 465 LYS B 842 REMARK 465 GLU B 843 REMARK 465 LYS B 844 REMARK 465 GLN B 845 REMARK 465 PHE B 846 REMARK 465 GLN B 847 REMARK 465 LYS B 848 REMARK 465 VAL B 849 REMARK 465 ILE B 850 REMARK 465 THR B 851 REMARK 465 GLU B 852 REMARK 465 TYR B 853 REMARK 465 LEU B 854 REMARK 465 ASN B 855 REMARK 465 ALA B 856 REMARK 465 GLN B 857 REMARK 465 GLU B 858 REMARK 465 SER B 859 REMARK 465 ALA B 860 REMARK 465 LYS B 861 REMARK 465 SER B 862 REMARK 465 ALA B 863 REMARK 465 ARG B 864 REMARK 465 LEU B 865 REMARK 465 ASN B 866 REMARK 465 LEU B 867 REMARK 465 TRP B 868 REMARK 465 ARG B 869 REMARK 465 TYR B 870 REMARK 465 GLY B 871 REMARK 465 ASP B 872 REMARK 465 PHE B 873 REMARK 465 ARG B 874 REMARK 465 ALA B 875 REMARK 465 ASP B 876 REMARK 465 ASP B 877 REMARK 465 ALA B 878 REMARK 465 ASP B 879 REMARK 465 GLU B 880 REMARK 465 PHE B 881 REMARK 465 GLY B 882 REMARK 465 TYR B 883 REMARK 465 SER B 884 REMARK 465 ARG B 885 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 726 -117.80 -105.92 REMARK 500 SER A 822 38.29 36.86 REMARK 500 ASN A 866 -105.05 48.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: P100-TDS RELATED DB: TARGETDB REMARK 900 RELATED ID: 2HQX RELATED DB: PDB REMARK 900 P100 TUDOR DOMAIN CONSERVED REGION REMARK 900 RELATED ID: P100-TLD RELATED DB: TARGETDB DBREF 2HQE A 640 885 UNP Q7KZF4 SND1_HUMAN 665 910 DBREF 2HQE B 640 885 UNP Q7KZF4 SND1_HUMAN 665 910 SEQADV 2HQE PHE A 682 UNP Q7KZF4 LEU 707 VARIANT SEQADV 2HQE GLN A 683 UNP Q7KZF4 GLU 708 VARIANT SEQADV 2HQE PHE B 682 UNP Q7KZF4 LEU 707 VARIANT SEQADV 2HQE GLN B 683 UNP Q7KZF4 GLU 708 VARIANT SEQRES 1 A 246 PRO VAL GLU GLU VAL MET PRO VAL LEU GLU GLU LYS GLU SEQRES 2 A 246 ARG SER ALA SER TYR LYS PRO VAL PHE VAL THR GLU ILE SEQRES 3 A 246 THR ASP ASP LEU HIS PHE TYR VAL GLN ASP VAL GLU THR SEQRES 4 A 246 GLY THR GLN PHE GLN LYS LEU MET GLU ASN MET ARG ASN SEQRES 5 A 246 ASP ILE ALA SER HIS PRO PRO VAL GLU GLY SER TYR ALA SEQRES 6 A 246 PRO ARG ARG GLY GLU PHE CYS ILE ALA LYS PHE VAL ASP SEQRES 7 A 246 GLY GLU TRP TYR ARG ALA ARG VAL GLU LYS VAL GLU SER SEQRES 8 A 246 PRO ALA LYS ILE HIS VAL PHE TYR ILE ASP TYR GLY ASN SEQRES 9 A 246 ARG GLU VAL LEU PRO SER THR ARG LEU GLY THR LEU SER SEQRES 10 A 246 PRO ALA PHE SER THR ARG VAL LEU PRO ALA GLN ALA THR SEQRES 11 A 246 GLU TYR ALA PHE ALA PHE ILE GLN VAL PRO GLN ASP ASP SEQRES 12 A 246 ASP ALA ARG THR ASP ALA VAL ASP SER VAL VAL ARG ASP SEQRES 13 A 246 ILE GLN ASN THR GLN CYS LEU LEU ASN VAL GLU HIS LEU SEQRES 14 A 246 SER ALA GLY CYS PRO HIS VAL THR LEU GLN PHE ALA ASP SEQRES 15 A 246 SER LYS GLY ASP VAL GLY LEU GLY LEU VAL LYS GLU GLY SEQRES 16 A 246 LEU VAL MET VAL GLU VAL ARG LYS GLU LYS GLN PHE GLN SEQRES 17 A 246 LYS VAL ILE THR GLU TYR LEU ASN ALA GLN GLU SER ALA SEQRES 18 A 246 LYS SER ALA ARG LEU ASN LEU TRP ARG TYR GLY ASP PHE SEQRES 19 A 246 ARG ALA ASP ASP ALA ASP GLU PHE GLY TYR SER ARG SEQRES 1 B 246 PRO VAL GLU GLU VAL MET PRO VAL LEU GLU GLU LYS GLU SEQRES 2 B 246 ARG SER ALA SER TYR LYS PRO VAL PHE VAL THR GLU ILE SEQRES 3 B 246 THR ASP ASP LEU HIS PHE TYR VAL GLN ASP VAL GLU THR SEQRES 4 B 246 GLY THR GLN PHE GLN LYS LEU MET GLU ASN MET ARG ASN SEQRES 5 B 246 ASP ILE ALA SER HIS PRO PRO VAL GLU GLY SER TYR ALA SEQRES 6 B 246 PRO ARG ARG GLY GLU PHE CYS ILE ALA LYS PHE VAL ASP SEQRES 7 B 246 GLY GLU TRP TYR ARG ALA ARG VAL GLU LYS VAL GLU SER SEQRES 8 B 246 PRO ALA LYS ILE HIS VAL PHE TYR ILE ASP TYR GLY ASN SEQRES 9 B 246 ARG GLU VAL LEU PRO SER THR ARG LEU GLY THR LEU SER SEQRES 10 B 246 PRO ALA PHE SER THR ARG VAL LEU PRO ALA GLN ALA THR SEQRES 11 B 246 GLU TYR ALA PHE ALA PHE ILE GLN VAL PRO GLN ASP ASP SEQRES 12 B 246 ASP ALA ARG THR ASP ALA VAL ASP SER VAL VAL ARG ASP SEQRES 13 B 246 ILE GLN ASN THR GLN CYS LEU LEU ASN VAL GLU HIS LEU SEQRES 14 B 246 SER ALA GLY CYS PRO HIS VAL THR LEU GLN PHE ALA ASP SEQRES 15 B 246 SER LYS GLY ASP VAL GLY LEU GLY LEU VAL LYS GLU GLY SEQRES 16 B 246 LEU VAL MET VAL GLU VAL ARG LYS GLU LYS GLN PHE GLN SEQRES 17 B 246 LYS VAL ILE THR GLU TYR LEU ASN ALA GLN GLU SER ALA SEQRES 18 B 246 LYS SER ALA ARG LEU ASN LEU TRP ARG TYR GLY ASP PHE SEQRES 19 B 246 ARG ALA ASP ASP ALA ASP GLU PHE GLY TYR SER ARG FORMUL 3 HOH *156(H2 O) HELIX 1 1 THR A 678 HIS A 696 1 19 HELIX 2 2 PRO A 748 THR A 750 5 3 HELIX 3 3 SER A 756 SER A 760 5 5 HELIX 4 4 ASP A 781 GLN A 797 1 17 HELIX 5 5 ASP A 825 GLU A 833 1 9 HELIX 6 6 GLU A 843 GLN A 845 5 3 HELIX 7 7 PHE A 846 ALA A 863 1 18 HELIX 8 8 LEU A 865 ARG A 869 5 5 HELIX 9 9 THR B 680 HIS B 696 1 17 HELIX 10 10 PRO B 748 THR B 750 5 3 HELIX 11 11 SER B 756 SER B 760 5 5 SHEET 1 A 6 LYS A 658 ILE A 665 0 SHEET 2 A 6 HIS A 670 ASP A 675 -1 O GLN A 674 N PHE A 661 SHEET 3 A 6 THR A 769 PHE A 773 -1 O TYR A 771 N PHE A 671 SHEET 4 A 6 HIS A 814 GLN A 818 1 O VAL A 815 N ALA A 772 SHEET 5 A 6 THR A 799 HIS A 807 -1 N LEU A 802 O GLN A 818 SHEET 6 A 6 LYS A 658 ILE A 665 -1 N VAL A 662 O THR A 799 SHEET 1 B 5 ARG A 744 LEU A 747 0 SHEET 2 B 5 LYS A 733 TYR A 738 -1 N VAL A 736 O GLU A 745 SHEET 3 B 5 TRP A 720 SER A 730 -1 N LYS A 727 O HIS A 735 SHEET 4 B 5 PHE A 710 LYS A 714 -1 N CYS A 711 O ALA A 723 SHEET 5 B 5 LEU A 752 GLY A 753 -1 O GLY A 753 N ILE A 712 SHEET 1 C 2 ILE A 776 GLN A 777 0 SHEET 2 C 2 MET A 837 VAL A 838 -1 O MET A 837 N GLN A 777 SHEET 1 D 5 ARG B 744 LEU B 747 0 SHEET 2 D 5 LYS B 733 TYR B 738 -1 N VAL B 736 O GLU B 745 SHEET 3 D 5 TRP B 720 SER B 730 -1 N GLU B 726 O HIS B 735 SHEET 4 D 5 PHE B 710 LYS B 714 -1 N ALA B 713 O TYR B 721 SHEET 5 D 5 LEU B 752 GLY B 753 -1 O GLY B 753 N ILE B 712 CISPEP 1 GLU A 700 GLY A 701 0 -2.68 CRYST1 49.931 93.413 95.279 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010495 0.00000