data_2HRL
#
_entry.id 2HRL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2HRL pdb_00002hrl 10.2210/pdb2hrl/pdb
RCSB RCSB038680 ? ?
WWPDB D_1000038680 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-08-15
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2023-10-25
6 'Structure model' 2 2 2024-10-30
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' Advisory
5 4 'Structure model' 'Atomic model'
6 4 'Structure model' 'Data collection'
7 4 'Structure model' 'Derived calculations'
8 4 'Structure model' 'Structure summary'
9 5 'Structure model' Advisory
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Database references'
12 5 'Structure model' 'Refinement description'
13 5 'Structure model' 'Structure summary'
14 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' entity
4 4 'Structure model' pdbx_branch_scheme
5 4 'Structure model' pdbx_chem_comp_identifier
6 4 'Structure model' pdbx_entity_branch
7 4 'Structure model' pdbx_entity_branch_descriptor
8 4 'Structure model' pdbx_entity_branch_link
9 4 'Structure model' pdbx_entity_branch_list
10 4 'Structure model' pdbx_entity_nonpoly
11 4 'Structure model' pdbx_nonpoly_scheme
12 4 'Structure model' pdbx_struct_assembly_gen
13 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
14 4 'Structure model' struct_asym
15 4 'Structure model' struct_conn
16 4 'Structure model' struct_site
17 4 'Structure model' struct_site_gen
18 5 'Structure model' chem_comp
19 5 'Structure model' chem_comp_atom
20 5 'Structure model' chem_comp_bond
21 5 'Structure model' database_2
22 5 'Structure model' pdbx_initial_refinement_model
23 5 'Structure model' pdbx_unobs_or_zero_occ_atoms
24 6 'Structure model' pdbx_entry_details
25 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_asym_id'
6 4 'Structure model' '_atom_site.auth_atom_id'
7 4 'Structure model' '_atom_site.auth_comp_id'
8 4 'Structure model' '_atom_site.auth_seq_id'
9 4 'Structure model' '_atom_site.label_asym_id'
10 4 'Structure model' '_atom_site.label_atom_id'
11 4 'Structure model' '_atom_site.label_comp_id'
12 4 'Structure model' '_atom_site.label_entity_id'
13 4 'Structure model' '_atom_site.type_symbol'
14 4 'Structure model' '_chem_comp.name'
15 4 'Structure model' '_chem_comp.type'
16 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
17 4 'Structure model' '_struct_conn.pdbx_dist_value'
18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 4 'Structure model' '_struct_conn.pdbx_role'
20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
34 5 'Structure model' '_chem_comp.pdbx_synonyms'
35 5 'Structure model' '_database_2.pdbx_DOI'
36 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2HRL
_pdbx_database_status.recvd_initial_deposition_date 2006-07-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1O7S 'The same protein in APO form' unspecified
PDB 1O7V 'The same protein in APO form' unspecified
PDB 2DF3 'The same protein in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl' unspecified
PDB 2G5R 'The same protein in complex with methyl-9-(aminooxalyl-amino)-9-deoxyNeu5Ac (oxamido-Neu5Ac)' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Attrill, H.' 1
'Imamura, A.' 2
'Sharma, R.S.' 3
'Kiso, M.' 4
'Crocker, P.R.' 5
'van Aalten, D.M.F.' 6
#
_citation.id primary
_citation.title
'Siglec-7 Undergoes a Major Conformational Change When Complexed with the {alpha}(2,8)-Disialylganglioside GT1b'
_citation.journal_abbrev J.Biol.Chem.
_citation.journal_volume 281
_citation.page_first 32774
_citation.page_last 32783
_citation.year 2006
_citation.journal_id_ASTM JBCHA3
_citation.country US
_citation.journal_id_ISSN 0021-9258
_citation.journal_id_CSD 0071
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 16895906
_citation.pdbx_database_id_DOI 10.1074/jbc.M601714200
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Attrill, H.' 1 ?
primary 'Imamura, A.' 2 ?
primary 'Sharma, R.S.' 3 ?
primary 'Kiso, M.' 4 ?
primary 'Crocker, P.R.' 5 ?
primary 'van Aalten, D.M.F.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Sialic acid-binding Ig-like lectin 7' 14655.292 1 ? ? 'Ig-like V-type, N-terminal domain, residues 18-144' ?
2 branched man
;N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
;
1127.999 1 ? ? ? ?
3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ?
4 non-polymer syn ETHYL-TRIMETHYL-SILANE 102.250 1 ? ? ? ?
5 water nat water 18.015 60 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'Siglec-7, QA79 membrane protein, Adhesion inhibitory receptor molecule 1, AIRM-1, p75, D-siglec, CDw328 antigen'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL
LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT
;
_entity_poly.pdbx_seq_one_letter_code_can
;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL
LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
4 ETHYL-TRIMETHYL-SILANE CEQ
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 GLN n
1 3 LYS n
1 4 SER n
1 5 ASN n
1 6 ARG n
1 7 LYS n
1 8 ASP n
1 9 TYR n
1 10 SER n
1 11 LEU n
1 12 THR n
1 13 MET n
1 14 GLN n
1 15 SER n
1 16 SER n
1 17 VAL n
1 18 THR n
1 19 VAL n
1 20 GLN n
1 21 GLU n
1 22 GLY n
1 23 MET n
1 24 CYS n
1 25 VAL n
1 26 HIS n
1 27 VAL n
1 28 ARG n
1 29 CYS n
1 30 SER n
1 31 PHE n
1 32 SER n
1 33 TYR n
1 34 PRO n
1 35 VAL n
1 36 ASP n
1 37 SER n
1 38 GLN n
1 39 THR n
1 40 ASP n
1 41 SER n
1 42 ASP n
1 43 PRO n
1 44 VAL n
1 45 HIS n
1 46 GLY n
1 47 TYR n
1 48 TRP n
1 49 PHE n
1 50 ARG n
1 51 ALA n
1 52 GLY n
1 53 ASN n
1 54 ASP n
1 55 ILE n
1 56 SER n
1 57 TRP n
1 58 LYS n
1 59 ALA n
1 60 PRO n
1 61 VAL n
1 62 ALA n
1 63 THR n
1 64 ASN n
1 65 ASN n
1 66 PRO n
1 67 ALA n
1 68 TRP n
1 69 ALA n
1 70 VAL n
1 71 GLN n
1 72 GLU n
1 73 GLU n
1 74 THR n
1 75 ARG n
1 76 ASP n
1 77 ARG n
1 78 PHE n
1 79 HIS n
1 80 LEU n
1 81 LEU n
1 82 GLY n
1 83 ASP n
1 84 PRO n
1 85 GLN n
1 86 THR n
1 87 LYS n
1 88 ASN n
1 89 CYS n
1 90 THR n
1 91 LEU n
1 92 SER n
1 93 ILE n
1 94 ARG n
1 95 ASP n
1 96 ALA n
1 97 ARG n
1 98 MET n
1 99 SER n
1 100 ASP n
1 101 ALA n
1 102 GLY n
1 103 ARG n
1 104 TYR n
1 105 PHE n
1 106 PHE n
1 107 ARG n
1 108 MET n
1 109 GLU n
1 110 LYS n
1 111 GLY n
1 112 ASN n
1 113 ILE n
1 114 LYS n
1 115 TRP n
1 116 ASN n
1 117 TYR n
1 118 LYS n
1 119 TYR n
1 120 ASP n
1 121 GLN n
1 122 LEU n
1 123 SER n
1 124 VAL n
1 125 ASN n
1 126 VAL n
1 127 THR n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name 'Chinese hamster'
_entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line 'CHO Lec1'
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pDEF-Siglec-7
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'DNeup5Aca2-8DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0
2 2
;WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-3-4/a4-b1_b3-c2_b4-e1_c8-d2
;
WURCS PDB2Glycan 1.1.0
3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{[(8+2)][a-D-Neup5Ac]{}}[(4+1)][b-D-3-deoxy-GalpNAc]{}}}' LINUCS PDB-CARE
?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ?
2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ?
3 2 4 SIA C2 O2 3 SIA O8 HO8 sing ?
4 2 5 NGA C1 O1 2 GAL O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6'
180.156
CEQ non-polymer . ETHYL-TRIMETHYL-SILANE ? 'C5 H14 Si' 102.250
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose'
'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose
;N-acetyl-beta-D-galactosamine; 2-acetamido-2-deoxy-beta-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-D-GALACTOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid'
'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb
NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine
NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc
NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca
SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid'
SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac
SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 18 ? ? ? A . n
A 1 2 GLN 2 19 ? ? ? A . n
A 1 3 LYS 3 20 ? ? ? A . n
A 1 4 SER 4 21 ? ? ? A . n
A 1 5 ASN 5 22 ? ? ? A . n
A 1 6 ARG 6 23 ? ? ? A . n
A 1 7 LYS 7 24 ? ? ? A . n
A 1 8 ASP 8 25 25 ASP ALA A . n
A 1 9 TYR 9 26 26 TYR TYR A . n
A 1 10 SER 10 27 27 SER SER A . n
A 1 11 LEU 11 28 28 LEU LEU A . n
A 1 12 THR 12 29 29 THR THR A . n
A 1 13 MET 13 30 30 MET MET A . n
A 1 14 GLN 14 31 31 GLN GLN A . n
A 1 15 SER 15 32 32 SER SER A . n
A 1 16 SER 16 33 33 SER SER A . n
A 1 17 VAL 17 34 34 VAL VAL A . n
A 1 18 THR 18 35 35 THR THR A . n
A 1 19 VAL 19 36 36 VAL VAL A . n
A 1 20 GLN 20 37 37 GLN GLN A . n
A 1 21 GLU 21 38 38 GLU GLU A . n
A 1 22 GLY 22 39 39 GLY GLY A . n
A 1 23 MET 23 40 40 MET MET A . n
A 1 24 CYS 24 41 41 CYS CYS A . n
A 1 25 VAL 25 42 42 VAL VAL A . n
A 1 26 HIS 26 43 43 HIS HIS A . n
A 1 27 VAL 27 44 44 VAL VAL A . n
A 1 28 ARG 28 45 45 ARG ARG A . n
A 1 29 CYS 29 46 46 CYS CYS A . n
A 1 30 SER 30 47 47 SER SER A . n
A 1 31 PHE 31 48 48 PHE PHE A . n
A 1 32 SER 32 49 49 SER SER A . n
A 1 33 TYR 33 50 50 TYR TYR A . n
A 1 34 PRO 34 51 51 PRO PRO A . n
A 1 35 VAL 35 52 52 VAL VAL A . n
A 1 36 ASP 36 53 ? ? ? A . n
A 1 37 SER 37 54 ? ? ? A . n
A 1 38 GLN 38 55 ? ? ? A . n
A 1 39 THR 39 56 ? ? ? A . n
A 1 40 ASP 40 57 57 ASP ALA A . n
A 1 41 SER 41 58 58 SER SER A . n
A 1 42 ASP 42 59 59 ASP ASP A . n
A 1 43 PRO 43 60 60 PRO PRO A . n
A 1 44 VAL 44 61 61 VAL VAL A . n
A 1 45 HIS 45 62 62 HIS HIS A . n
A 1 46 GLY 46 63 63 GLY GLY A . n
A 1 47 TYR 47 64 64 TYR TYR A . n
A 1 48 TRP 48 65 65 TRP TRP A . n
A 1 49 PHE 49 66 66 PHE PHE A . n
A 1 50 ARG 50 67 67 ARG ARG A . n
A 1 51 ALA 51 68 68 ALA ALA A . n
A 1 52 GLY 52 69 69 GLY GLY A . n
A 1 53 ASN 53 70 70 ASN ASN A . n
A 1 54 ASP 54 71 71 ASP ASP A . n
A 1 55 ILE 55 72 72 ILE ILE A . n
A 1 56 SER 56 73 73 SER SER A . n
A 1 57 TRP 57 74 74 TRP TRP A . n
A 1 58 LYS 58 75 75 LYS ALA A . n
A 1 59 ALA 59 76 76 ALA ALA A . n
A 1 60 PRO 60 77 77 PRO PRO A . n
A 1 61 VAL 61 78 78 VAL VAL A . n
A 1 62 ALA 62 79 79 ALA ALA A . n
A 1 63 THR 63 80 80 THR THR A . n
A 1 64 ASN 64 81 81 ASN ASN A . n
A 1 65 ASN 65 82 82 ASN ASN A . n
A 1 66 PRO 66 83 83 PRO PRO A . n
A 1 67 ALA 67 84 84 ALA ALA A . n
A 1 68 TRP 68 85 85 TRP TRP A . n
A 1 69 ALA 69 86 86 ALA ALA A . n
A 1 70 VAL 70 87 87 VAL VAL A . n
A 1 71 GLN 71 88 88 GLN GLN A . n
A 1 72 GLU 72 89 89 GLU GLU A . n
A 1 73 GLU 73 90 90 GLU GLU A . n
A 1 74 THR 74 91 91 THR THR A . n
A 1 75 ARG 75 92 92 ARG ARG A . n
A 1 76 ASP 76 93 93 ASP ASP A . n
A 1 77 ARG 77 94 94 ARG ARG A . n
A 1 78 PHE 78 95 95 PHE PHE A . n
A 1 79 HIS 79 96 96 HIS HIS A . n
A 1 80 LEU 80 97 97 LEU LEU A . n
A 1 81 LEU 81 98 98 LEU LEU A . n
A 1 82 GLY 82 99 99 GLY GLY A . n
A 1 83 ASP 83 100 100 ASP ASP A . n
A 1 84 PRO 84 101 101 PRO PRO A . n
A 1 85 GLN 85 102 102 GLN GLN A . n
A 1 86 THR 86 103 103 THR THR A . n
A 1 87 LYS 87 104 104 LYS LYS A . n
A 1 88 ASN 88 105 105 ASN ASN A . n
A 1 89 CYS 89 106 106 CYS CYS A . n
A 1 90 THR 90 107 107 THR THR A . n
A 1 91 LEU 91 108 108 LEU LEU A . n
A 1 92 SER 92 109 109 SER SER A . n
A 1 93 ILE 93 110 110 ILE ILE A . n
A 1 94 ARG 94 111 111 ARG ARG A . n
A 1 95 ASP 95 112 112 ASP ASP A . n
A 1 96 ALA 96 113 113 ALA ALA A . n
A 1 97 ARG 97 114 114 ARG ARG A . n
A 1 98 MET 98 115 115 MET MET A . n
A 1 99 SER 99 116 116 SER SER A . n
A 1 100 ASP 100 117 117 ASP ASP A . n
A 1 101 ALA 101 118 118 ALA ALA A . n
A 1 102 GLY 102 119 119 GLY GLY A . n
A 1 103 ARG 103 120 120 ARG ARG A . n
A 1 104 TYR 104 121 121 TYR TYR A . n
A 1 105 PHE 105 122 122 PHE PHE A . n
A 1 106 PHE 106 123 123 PHE PHE A . n
A 1 107 ARG 107 124 124 ARG ARG A . n
A 1 108 MET 108 125 125 MET MET A . n
A 1 109 GLU 109 126 126 GLU GLU A . n
A 1 110 LYS 110 127 127 LYS LYS A . n
A 1 111 GLY 111 128 128 GLY GLY A . n
A 1 112 ASN 112 129 129 ASN ASN A . n
A 1 113 ILE 113 130 130 ILE ILE A . n
A 1 114 LYS 114 131 131 LYS LYS A . n
A 1 115 TRP 115 132 132 TRP TRP A . n
A 1 116 ASN 116 133 133 ASN ASN A . n
A 1 117 TYR 117 134 134 TYR TYR A . n
A 1 118 LYS 118 135 135 LYS LYS A . n
A 1 119 TYR 119 136 136 TYR TYR A . n
A 1 120 ASP 120 137 137 ASP ASP A . n
A 1 121 GLN 121 138 138 GLN GLN A . n
A 1 122 LEU 122 139 139 LEU LEU A . n
A 1 123 SER 123 140 140 SER SER A . n
A 1 124 VAL 124 141 141 VAL VAL A . n
A 1 125 ASN 125 142 142 ASN ASN A . n
A 1 126 VAL 126 143 143 VAL VAL A . n
A 1 127 THR 127 144 144 THR THR A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 BGC 1 B BGC 1 D GLC 205 n
B 2 GAL 2 B GAL 2 D GAL 203 n
B 2 SIA 3 B SIA 3 D SIA 202 n
B 2 SIA 4 B SIA 4 D SIA 201 n
B 2 NGA 5 B NGA 5 D NGA 204 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG 1 1 1 NAG NAG A .
D 4 CEQ 1 206 206 CEQ TMS A .
E 5 HOH 1 207 1 HOH HOH A .
E 5 HOH 2 208 2 HOH HOH A .
E 5 HOH 3 209 4 HOH HOH A .
E 5 HOH 4 210 5 HOH HOH A .
E 5 HOH 5 211 6 HOH HOH A .
E 5 HOH 6 212 8 HOH HOH A .
E 5 HOH 7 213 9 HOH HOH A .
E 5 HOH 8 214 10 HOH HOH A .
E 5 HOH 9 215 11 HOH HOH A .
E 5 HOH 10 216 12 HOH HOH A .
E 5 HOH 11 217 13 HOH HOH A .
E 5 HOH 12 218 14 HOH HOH A .
E 5 HOH 13 219 15 HOH HOH A .
E 5 HOH 14 220 17 HOH HOH A .
E 5 HOH 15 221 19 HOH HOH A .
E 5 HOH 16 222 20 HOH HOH A .
E 5 HOH 17 223 21 HOH HOH A .
E 5 HOH 18 224 22 HOH HOH A .
E 5 HOH 19 225 26 HOH HOH A .
E 5 HOH 20 226 27 HOH HOH A .
E 5 HOH 21 227 28 HOH HOH A .
E 5 HOH 22 228 29 HOH HOH A .
E 5 HOH 23 229 31 HOH HOH A .
E 5 HOH 24 230 32 HOH HOH A .
E 5 HOH 25 231 36 HOH HOH A .
E 5 HOH 26 232 38 HOH HOH A .
E 5 HOH 27 233 39 HOH HOH A .
E 5 HOH 28 234 40 HOH HOH A .
E 5 HOH 29 235 41 HOH HOH A .
E 5 HOH 30 236 45 HOH HOH A .
E 5 HOH 31 237 46 HOH HOH A .
E 5 HOH 32 238 47 HOH HOH A .
E 5 HOH 33 239 56 HOH HOH A .
E 5 HOH 34 240 57 HOH HOH A .
E 5 HOH 35 241 59 HOH HOH A .
E 5 HOH 36 242 60 HOH HOH A .
E 5 HOH 37 243 61 HOH HOH A .
E 5 HOH 38 244 62 HOH HOH A .
E 5 HOH 39 245 63 HOH HOH A .
E 5 HOH 40 246 64 HOH HOH A .
E 5 HOH 41 247 65 HOH HOH A .
E 5 HOH 42 248 66 HOH HOH A .
E 5 HOH 43 249 67 HOH HOH A .
E 5 HOH 44 250 68 HOH HOH A .
E 5 HOH 45 251 69 HOH HOH A .
E 5 HOH 46 252 70 HOH HOH A .
E 5 HOH 47 253 71 HOH HOH A .
E 5 HOH 48 254 72 HOH HOH A .
E 5 HOH 49 255 73 HOH HOH A .
E 5 HOH 50 256 74 HOH HOH A .
E 5 HOH 51 257 75 HOH HOH A .
E 5 HOH 52 258 76 HOH HOH A .
E 5 HOH 53 259 77 HOH HOH A .
E 5 HOH 54 260 78 HOH HOH A .
E 5 HOH 55 261 79 HOH HOH A .
E 5 HOH 56 262 80 HOH HOH A .
E 5 HOH 57 263 81 HOH HOH A .
E 5 HOH 58 264 82 HOH HOH A .
E 5 HOH 59 265 83 HOH HOH A .
E 5 HOH 60 266 84 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ASP 25 ? CG ? A ASP 8 CG
2 1 Y 1 A ASP 25 ? OD1 ? A ASP 8 OD1
3 1 Y 1 A ASP 25 ? OD2 ? A ASP 8 OD2
4 1 Y 0 A ARG 45 ? CG ? A ARG 28 CG
5 1 Y 0 A ARG 45 ? CD ? A ARG 28 CD
6 1 Y 0 A ARG 45 ? NE ? A ARG 28 NE
7 1 Y 0 A ARG 45 ? CZ ? A ARG 28 CZ
8 1 Y 0 A ARG 45 ? NH1 ? A ARG 28 NH1
9 1 Y 0 A ARG 45 ? NH2 ? A ARG 28 NH2
10 1 Y 1 A ASP 57 ? CG ? A ASP 40 CG
11 1 Y 1 A ASP 57 ? OD1 ? A ASP 40 OD1
12 1 Y 1 A ASP 57 ? OD2 ? A ASP 40 OD2
13 1 Y 1 A LYS 75 ? CG ? A LYS 58 CG
14 1 Y 1 A LYS 75 ? CD ? A LYS 58 CD
15 1 Y 1 A LYS 75 ? CE ? A LYS 58 CE
16 1 Y 1 A LYS 75 ? NZ ? A LYS 58 NZ
17 1 Y 0 A ARG 92 ? NE ? A ARG 75 NE
18 1 Y 0 A ARG 92 ? CZ ? A ARG 75 CZ
19 1 Y 0 A ARG 92 ? NH1 ? A ARG 75 NH1
20 1 Y 0 A ARG 92 ? NH2 ? A ARG 75 NH2
21 1 N 1 B NGA 5 ? O3 ? B NGA 5 O3
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
AMoRE phasing . ? 4
#
_cell.entry_id 2HRL
_cell.length_a 46.021
_cell.length_b 46.021
_cell.length_c 106.474
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2HRL
_symmetry.space_group_name_H-M 'P 32 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 154
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 2HRL
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.22
_exptl_crystal.density_percent_sol 44.60
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
'200mM sodium acetate, 100mM sodium cacodylate, 30 % w/v PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 4'
_diffrn_detector.pdbx_collection_date 2004-04-24
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9756
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID14-4'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID14-4
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9756
#
_reflns.entry_id 2HRL
_reflns.observed_criterion_sigma_F 2
_reflns.observed_criterion_sigma_I 2
_reflns.d_resolution_high 1.85
_reflns.d_resolution_low 15
_reflns.number_all ?
_reflns.number_obs 11626
_reflns.percent_possible_obs 98.3
_reflns.pdbx_Rmerge_I_obs 0.073
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 25.5
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 3.6
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.85
_reflns_shell.d_res_low 1.92
_reflns_shell.percent_possible_all 98.4
_reflns_shell.Rmerge_I_obs 0.52
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.3
_reflns_shell.pdbx_redundancy 2.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 11626
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 2HRL
_refine.ls_number_reflns_obs 11045
_refine.ls_number_reflns_all 11626
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 15.00
_refine.ls_d_res_high 1.85
_refine.ls_percent_reflns_obs 99.35
_refine.ls_R_factor_obs 0.19678
_refine.ls_R_factor_all 0.196
_refine.ls_R_factor_R_work 0.19505
_refine.ls_R_factor_R_free 0.23447
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.8
_refine.ls_number_reflns_R_free 551
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.955
_refine.correlation_coeff_Fo_to_Fc_free 0.935
_refine.B_iso_mean 24.459
_refine.aniso_B[1][1] -0.96
_refine.aniso_B[2][2] -0.96
_refine.aniso_B[3][3] 1.43
_refine.aniso_B[1][2] -0.48
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'PDB ENTRY 1O7V'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.152
_refine.pdbx_overall_ESU_R_Free 0.141
_refine.overall_SU_ML 0.101
_refine.overall_SU_B 3.430
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 933
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 96
_refine_hist.number_atoms_solvent 60
_refine_hist.number_atoms_total 1089
_refine_hist.d_res_high 1.85
_refine_hist.d_res_low 15.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.011 0.022 ? 1095 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.486 2.040 ? 1508 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5.613 5.000 ? 124 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.093 0.200 ? 171 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.004 0.020 ? 820 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.189 0.200 ? 408 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.173 0.200 ? 56 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.191 0.200 ? 33 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.192 0.200 ? 12 'X-RAY DIFFRACTION' ?
r_mcbond_it 1.331 3.000 ? 608 'X-RAY DIFFRACTION' ?
r_mcangle_it 2.112 3.200 ? 984 'X-RAY DIFFRACTION' ?
r_scbond_it 2.057 4.000 ? 487 'X-RAY DIFFRACTION' ?
r_scangle_it 2.573 3.500 ? 524 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.851
_refine_ls_shell.d_res_low 1.899
_refine_ls_shell.number_reflns_R_work 782
_refine_ls_shell.R_factor_R_work 0.265
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.284
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 48
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 2HRL
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2HRL
_struct.title 'Siglec-7 in complex with GT1b'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2HRL
_struct_keywords.pdbx_keywords 'CELL ADHESION'
_struct_keywords.text 'Ig-like domain, Siglec, Ganglioside, Siglec-7, CELL ADHESION'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code SIGL7_HUMAN
_struct_ref.pdbx_db_accession Q9Y286
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL
LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT
;
_struct_ref.pdbx_align_begin 18
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2HRL
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 127
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q9Y286
_struct_ref_seq.db_align_beg 18
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 144
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 18
_struct_ref_seq.pdbx_auth_seq_align_end 144
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ALA A 67 ? GLU A 72 ? ALA A 84 GLU A 89 1 ? 6
HELX_P HELX_P2 2 ASP A 83 ? LYS A 87 ? ASP A 100 LYS A 104 5 ? 5
HELX_P HELX_P3 3 ARG A 97 ? ALA A 101 ? ARG A 114 ALA A 118 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 29 SG A ? ? 1_555 A CYS 89 SG ? ? A CYS 46 A CYS 106 1_555 ? ? ? ? ? ? ? 2.036 ? ?
disulf2 disulf ? ? A CYS 29 SG B ? ? 1_555 A CYS 89 SG ? ? A CYS 46 A CYS 106 1_555 ? ? ? ? ? ? ? 2.046 ? ?
covale1 covale one ? C NAG . C1 ? ? ? 1_555 A ASN 88 ND2 ? ? A NAG 1 A ASN 105 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation
covale2 covale one ? D CEQ . C6 ? ? ? 1_555 B BGC . O1 ? ? A CEQ 206 B BGC 1 1_555 ? ? ? ? ? ? ? 1.463 ? ?
covale3 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.416 ? ?
covale4 covale both ? B GAL . O3 ? ? ? 1_555 B SIA . C2 ? ? B GAL 2 B SIA 3 1_555 ? ? ? ? ? ? ? 1.447 ? ?
covale5 covale both ? B GAL . O4 ? ? ? 1_555 B NGA . C1 ? ? B GAL 2 B NGA 5 1_555 ? ? ? ? ? ? ? 1.449 ? ?
covale6 covale both ? B SIA . O8 ? ? ? 1_555 B SIA . C2 ? ? B SIA 3 B SIA 4 1_555 ? ? ? ? ? ? ? 1.458 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG C . ? ASN A 88 ? NAG A 1 ? 1_555 ASN A 105 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 CYS A 29 A CYS A 89 ? CYS A 46 ? 1_555 CYS A 106 ? 1_555 SG SG . . . None 'Disulfide bridge'
3 CYS A 29 B CYS A 89 ? CYS A 46 ? 1_555 CYS A 106 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 2 ?
B ? 5 ?
C ? 4 ?
D ? 3 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
B 1 2 ? parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
C 1 2 ? parallel
C 2 3 ? anti-parallel
C 3 4 ? anti-parallel
D 1 2 ? anti-parallel
D 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 10 ? MET A 13 ? SER A 27 MET A 30
A 2 CYS A 29 ? SER A 32 ? CYS A 46 SER A 49
B 1 SER A 16 ? GLN A 20 ? SER A 33 GLN A 37
B 2 LEU A 122 ? THR A 127 ? LEU A 139 THR A 144
B 3 GLY A 102 ? LYS A 110 ? GLY A 119 LYS A 127
B 4 VAL A 44 ? ARG A 50 ? VAL A 61 ARG A 67
B 5 ALA A 62 ? THR A 63 ? ALA A 79 THR A 80
C 1 SER A 16 ? GLN A 20 ? SER A 33 GLN A 37
C 2 LEU A 122 ? THR A 127 ? LEU A 139 THR A 144
C 3 GLY A 102 ? LYS A 110 ? GLY A 119 LYS A 127
C 4 ILE A 113 ? ASN A 116 ? ILE A 130 ASN A 133
D 1 VAL A 25 ? VAL A 27 ? VAL A 42 VAL A 44
D 2 LEU A 91 ? ILE A 93 ? LEU A 108 ILE A 110
D 3 PHE A 78 ? LEU A 80 ? PHE A 95 LEU A 97
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N THR A 12 ? N THR A 29 O SER A 30 ? O SER A 47
B 1 2 N VAL A 19 ? N VAL A 36 O ASN A 125 ? O ASN A 142
B 2 3 O VAL A 124 ? O VAL A 141 N GLY A 102 ? N GLY A 119
B 3 4 O GLU A 109 ? O GLU A 126 N HIS A 45 ? N HIS A 62
B 4 5 N TRP A 48 ? N TRP A 65 O ALA A 62 ? O ALA A 79
C 1 2 N VAL A 19 ? N VAL A 36 O ASN A 125 ? O ASN A 142
C 2 3 O VAL A 124 ? O VAL A 141 N GLY A 102 ? N GLY A 119
C 3 4 N LYS A 110 ? N LYS A 127 O ILE A 113 ? O ILE A 130
D 1 2 N VAL A 27 ? N VAL A 44 O LEU A 91 ? O LEU A 108
D 2 3 O SER A 92 ? O SER A 109 N HIS A 79 ? N HIS A 96
#
_pdbx_entry_details.entry_id 2HRL
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 CB A ARG 45 ? ? CG A ARG 45 ? ? 1.317 1.521 -0.204 0.027 N
2 1 CD A ARG 92 ? ? NE A ARG 92 ? ? 0.971 1.460 -0.489 0.017 N
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 CD
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 ARG
_pdbx_validate_rmsd_angle.auth_seq_id_1 92
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 NE
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 ARG
_pdbx_validate_rmsd_angle.auth_seq_id_2 92
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 CZ
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 ARG
_pdbx_validate_rmsd_angle.auth_seq_id_3 92
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 143.74
_pdbx_validate_rmsd_angle.angle_target_value 123.60
_pdbx_validate_rmsd_angle.angle_deviation 20.14
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.40
_pdbx_validate_rmsd_angle.linker_flag N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id ARG
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 92
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.143
_pdbx_validate_planes.type 'SIDE CHAIN'
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id ASN
_pdbx_struct_mod_residue.label_seq_id 88
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id ASN
_pdbx_struct_mod_residue.auth_seq_id 105
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id ASN
_pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE'
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 18 ? A GLY 1
2 1 Y 1 A GLN 19 ? A GLN 2
3 1 Y 1 A LYS 20 ? A LYS 3
4 1 Y 1 A SER 21 ? A SER 4
5 1 Y 1 A ASN 22 ? A ASN 5
6 1 Y 1 A ARG 23 ? A ARG 6
7 1 Y 1 A LYS 24 ? A LYS 7
8 1 Y 1 A ASP 53 ? A ASP 36
9 1 Y 1 A SER 54 ? A SER 37
10 1 Y 1 A GLN 55 ? A GLN 38
11 1 Y 1 A THR 56 ? A THR 39
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BGC C2 C N R 74
BGC C3 C N S 75
BGC C4 C N S 76
BGC C5 C N R 77
BGC C6 C N N 78
BGC C1 C N R 79
BGC O1 O N N 80
BGC O2 O N N 81
BGC O3 O N N 82
BGC O4 O N N 83
BGC O5 O N N 84
BGC O6 O N N 85
BGC H2 H N N 86
BGC H3 H N N 87
BGC H4 H N N 88
BGC H5 H N N 89
BGC H61 H N N 90
BGC H62 H N N 91
BGC H1 H N N 92
BGC HO1 H N N 93
BGC HO2 H N N 94
BGC HO3 H N N 95
BGC HO4 H N N 96
BGC HO6 H N N 97
CEQ SI1 SI N N 98
CEQ C2 C N N 99
CEQ C3 C N N 100
CEQ C4 C N N 101
CEQ C5 C N N 102
CEQ C6 C N N 103
CEQ H21 H N N 104
CEQ H22 H N N 105
CEQ H23 H N N 106
CEQ H31 H N N 107
CEQ H32 H N N 108
CEQ H33 H N N 109
CEQ H41 H N N 110
CEQ H42 H N N 111
CEQ H43 H N N 112
CEQ H51 H N N 113
CEQ H52 H N N 114
CEQ H61 H N N 115
CEQ H62 H N N 116
CEQ H63 H N N 117
CYS N N N N 118
CYS CA C N R 119
CYS C C N N 120
CYS O O N N 121
CYS CB C N N 122
CYS SG S N N 123
CYS OXT O N N 124
CYS H H N N 125
CYS H2 H N N 126
CYS HA H N N 127
CYS HB2 H N N 128
CYS HB3 H N N 129
CYS HG H N N 130
CYS HXT H N N 131
GAL C1 C N R 132
GAL C2 C N R 133
GAL C3 C N S 134
GAL C4 C N R 135
GAL C5 C N R 136
GAL C6 C N N 137
GAL O1 O N N 138
GAL O2 O N N 139
GAL O3 O N N 140
GAL O4 O N N 141
GAL O5 O N N 142
GAL O6 O N N 143
GAL H1 H N N 144
GAL H2 H N N 145
GAL H3 H N N 146
GAL H4 H N N 147
GAL H5 H N N 148
GAL H61 H N N 149
GAL H62 H N N 150
GAL HO1 H N N 151
GAL HO2 H N N 152
GAL HO3 H N N 153
GAL HO4 H N N 154
GAL HO6 H N N 155
GLN N N N N 156
GLN CA C N S 157
GLN C C N N 158
GLN O O N N 159
GLN CB C N N 160
GLN CG C N N 161
GLN CD C N N 162
GLN OE1 O N N 163
GLN NE2 N N N 164
GLN OXT O N N 165
GLN H H N N 166
GLN H2 H N N 167
GLN HA H N N 168
GLN HB2 H N N 169
GLN HB3 H N N 170
GLN HG2 H N N 171
GLN HG3 H N N 172
GLN HE21 H N N 173
GLN HE22 H N N 174
GLN HXT H N N 175
GLU N N N N 176
GLU CA C N S 177
GLU C C N N 178
GLU O O N N 179
GLU CB C N N 180
GLU CG C N N 181
GLU CD C N N 182
GLU OE1 O N N 183
GLU OE2 O N N 184
GLU OXT O N N 185
GLU H H N N 186
GLU H2 H N N 187
GLU HA H N N 188
GLU HB2 H N N 189
GLU HB3 H N N 190
GLU HG2 H N N 191
GLU HG3 H N N 192
GLU HE2 H N N 193
GLU HXT H N N 194
GLY N N N N 195
GLY CA C N N 196
GLY C C N N 197
GLY O O N N 198
GLY OXT O N N 199
GLY H H N N 200
GLY H2 H N N 201
GLY HA2 H N N 202
GLY HA3 H N N 203
GLY HXT H N N 204
HIS N N N N 205
HIS CA C N S 206
HIS C C N N 207
HIS O O N N 208
HIS CB C N N 209
HIS CG C Y N 210
HIS ND1 N Y N 211
HIS CD2 C Y N 212
HIS CE1 C Y N 213
HIS NE2 N Y N 214
HIS OXT O N N 215
HIS H H N N 216
HIS H2 H N N 217
HIS HA H N N 218
HIS HB2 H N N 219
HIS HB3 H N N 220
HIS HD1 H N N 221
HIS HD2 H N N 222
HIS HE1 H N N 223
HIS HE2 H N N 224
HIS HXT H N N 225
HOH O O N N 226
HOH H1 H N N 227
HOH H2 H N N 228
ILE N N N N 229
ILE CA C N S 230
ILE C C N N 231
ILE O O N N 232
ILE CB C N S 233
ILE CG1 C N N 234
ILE CG2 C N N 235
ILE CD1 C N N 236
ILE OXT O N N 237
ILE H H N N 238
ILE H2 H N N 239
ILE HA H N N 240
ILE HB H N N 241
ILE HG12 H N N 242
ILE HG13 H N N 243
ILE HG21 H N N 244
ILE HG22 H N N 245
ILE HG23 H N N 246
ILE HD11 H N N 247
ILE HD12 H N N 248
ILE HD13 H N N 249
ILE HXT H N N 250
LEU N N N N 251
LEU CA C N S 252
LEU C C N N 253
LEU O O N N 254
LEU CB C N N 255
LEU CG C N N 256
LEU CD1 C N N 257
LEU CD2 C N N 258
LEU OXT O N N 259
LEU H H N N 260
LEU H2 H N N 261
LEU HA H N N 262
LEU HB2 H N N 263
LEU HB3 H N N 264
LEU HG H N N 265
LEU HD11 H N N 266
LEU HD12 H N N 267
LEU HD13 H N N 268
LEU HD21 H N N 269
LEU HD22 H N N 270
LEU HD23 H N N 271
LEU HXT H N N 272
LYS N N N N 273
LYS CA C N S 274
LYS C C N N 275
LYS O O N N 276
LYS CB C N N 277
LYS CG C N N 278
LYS CD C N N 279
LYS CE C N N 280
LYS NZ N N N 281
LYS OXT O N N 282
LYS H H N N 283
LYS H2 H N N 284
LYS HA H N N 285
LYS HB2 H N N 286
LYS HB3 H N N 287
LYS HG2 H N N 288
LYS HG3 H N N 289
LYS HD2 H N N 290
LYS HD3 H N N 291
LYS HE2 H N N 292
LYS HE3 H N N 293
LYS HZ1 H N N 294
LYS HZ2 H N N 295
LYS HZ3 H N N 296
LYS HXT H N N 297
MET N N N N 298
MET CA C N S 299
MET C C N N 300
MET O O N N 301
MET CB C N N 302
MET CG C N N 303
MET SD S N N 304
MET CE C N N 305
MET OXT O N N 306
MET H H N N 307
MET H2 H N N 308
MET HA H N N 309
MET HB2 H N N 310
MET HB3 H N N 311
MET HG2 H N N 312
MET HG3 H N N 313
MET HE1 H N N 314
MET HE2 H N N 315
MET HE3 H N N 316
MET HXT H N N 317
NAG C1 C N R 318
NAG C2 C N R 319
NAG C3 C N R 320
NAG C4 C N S 321
NAG C5 C N R 322
NAG C6 C N N 323
NAG C7 C N N 324
NAG C8 C N N 325
NAG N2 N N N 326
NAG O1 O N N 327
NAG O3 O N N 328
NAG O4 O N N 329
NAG O5 O N N 330
NAG O6 O N N 331
NAG O7 O N N 332
NAG H1 H N N 333
NAG H2 H N N 334
NAG H3 H N N 335
NAG H4 H N N 336
NAG H5 H N N 337
NAG H61 H N N 338
NAG H62 H N N 339
NAG H81 H N N 340
NAG H82 H N N 341
NAG H83 H N N 342
NAG HN2 H N N 343
NAG HO1 H N N 344
NAG HO3 H N N 345
NAG HO4 H N N 346
NAG HO6 H N N 347
NGA C1 C N R 348
NGA C2 C N R 349
NGA C3 C N R 350
NGA C4 C N R 351
NGA C5 C N R 352
NGA C6 C N N 353
NGA C7 C N N 354
NGA C8 C N N 355
NGA N2 N N N 356
NGA O1 O N N 357
NGA O3 O N N 358
NGA O4 O N N 359
NGA O5 O N N 360
NGA O6 O N N 361
NGA O7 O N N 362
NGA H1 H N N 363
NGA H2 H N N 364
NGA H3 H N N 365
NGA H4 H N N 366
NGA H5 H N N 367
NGA H61 H N N 368
NGA H62 H N N 369
NGA H81 H N N 370
NGA H82 H N N 371
NGA H83 H N N 372
NGA HN2 H N N 373
NGA HO1 H N N 374
NGA HO3 H N N 375
NGA HO4 H N N 376
NGA HO6 H N N 377
PHE N N N N 378
PHE CA C N S 379
PHE C C N N 380
PHE O O N N 381
PHE CB C N N 382
PHE CG C Y N 383
PHE CD1 C Y N 384
PHE CD2 C Y N 385
PHE CE1 C Y N 386
PHE CE2 C Y N 387
PHE CZ C Y N 388
PHE OXT O N N 389
PHE H H N N 390
PHE H2 H N N 391
PHE HA H N N 392
PHE HB2 H N N 393
PHE HB3 H N N 394
PHE HD1 H N N 395
PHE HD2 H N N 396
PHE HE1 H N N 397
PHE HE2 H N N 398
PHE HZ H N N 399
PHE HXT H N N 400
PRO N N N N 401
PRO CA C N S 402
PRO C C N N 403
PRO O O N N 404
PRO CB C N N 405
PRO CG C N N 406
PRO CD C N N 407
PRO OXT O N N 408
PRO H H N N 409
PRO HA H N N 410
PRO HB2 H N N 411
PRO HB3 H N N 412
PRO HG2 H N N 413
PRO HG3 H N N 414
PRO HD2 H N N 415
PRO HD3 H N N 416
PRO HXT H N N 417
SER N N N N 418
SER CA C N S 419
SER C C N N 420
SER O O N N 421
SER CB C N N 422
SER OG O N N 423
SER OXT O N N 424
SER H H N N 425
SER H2 H N N 426
SER HA H N N 427
SER HB2 H N N 428
SER HB3 H N N 429
SER HG H N N 430
SER HXT H N N 431
SIA C1 C N N 432
SIA C2 C N R 433
SIA C3 C N N 434
SIA C4 C N S 435
SIA C5 C N R 436
SIA C6 C N R 437
SIA C7 C N R 438
SIA C8 C N R 439
SIA C9 C N N 440
SIA C10 C N N 441
SIA C11 C N N 442
SIA N5 N N N 443
SIA O1A O N N 444
SIA O1B O N N 445
SIA O2 O N N 446
SIA O4 O N N 447
SIA O6 O N N 448
SIA O7 O N N 449
SIA O8 O N N 450
SIA O9 O N N 451
SIA O10 O N N 452
SIA H32 H N N 453
SIA H31 H N N 454
SIA H4 H N N 455
SIA H5 H N N 456
SIA H6 H N N 457
SIA H7 H N N 458
SIA H8 H N N 459
SIA H92 H N N 460
SIA H91 H N N 461
SIA H111 H N N 462
SIA H113 H N N 463
SIA H112 H N N 464
SIA HN5 H N N 465
SIA HO1B H N N 466
SIA HO2 H N N 467
SIA HO4 H N N 468
SIA HO7 H N N 469
SIA HO8 H N N 470
SIA HO9 H N N 471
THR N N N N 472
THR CA C N S 473
THR C C N N 474
THR O O N N 475
THR CB C N R 476
THR OG1 O N N 477
THR CG2 C N N 478
THR OXT O N N 479
THR H H N N 480
THR H2 H N N 481
THR HA H N N 482
THR HB H N N 483
THR HG1 H N N 484
THR HG21 H N N 485
THR HG22 H N N 486
THR HG23 H N N 487
THR HXT H N N 488
TRP N N N N 489
TRP CA C N S 490
TRP C C N N 491
TRP O O N N 492
TRP CB C N N 493
TRP CG C Y N 494
TRP CD1 C Y N 495
TRP CD2 C Y N 496
TRP NE1 N Y N 497
TRP CE2 C Y N 498
TRP CE3 C Y N 499
TRP CZ2 C Y N 500
TRP CZ3 C Y N 501
TRP CH2 C Y N 502
TRP OXT O N N 503
TRP H H N N 504
TRP H2 H N N 505
TRP HA H N N 506
TRP HB2 H N N 507
TRP HB3 H N N 508
TRP HD1 H N N 509
TRP HE1 H N N 510
TRP HE3 H N N 511
TRP HZ2 H N N 512
TRP HZ3 H N N 513
TRP HH2 H N N 514
TRP HXT H N N 515
TYR N N N N 516
TYR CA C N S 517
TYR C C N N 518
TYR O O N N 519
TYR CB C N N 520
TYR CG C Y N 521
TYR CD1 C Y N 522
TYR CD2 C Y N 523
TYR CE1 C Y N 524
TYR CE2 C Y N 525
TYR CZ C Y N 526
TYR OH O N N 527
TYR OXT O N N 528
TYR H H N N 529
TYR H2 H N N 530
TYR HA H N N 531
TYR HB2 H N N 532
TYR HB3 H N N 533
TYR HD1 H N N 534
TYR HD2 H N N 535
TYR HE1 H N N 536
TYR HE2 H N N 537
TYR HH H N N 538
TYR HXT H N N 539
VAL N N N N 540
VAL CA C N S 541
VAL C C N N 542
VAL O O N N 543
VAL CB C N N 544
VAL CG1 C N N 545
VAL CG2 C N N 546
VAL OXT O N N 547
VAL H H N N 548
VAL H2 H N N 549
VAL HA H N N 550
VAL HB H N N 551
VAL HG11 H N N 552
VAL HG12 H N N 553
VAL HG13 H N N 554
VAL HG21 H N N 555
VAL HG22 H N N 556
VAL HG23 H N N 557
VAL HXT H N N 558
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BGC C2 C3 sing N N 70
BGC C2 C1 sing N N 71
BGC C2 O2 sing N N 72
BGC C2 H2 sing N N 73
BGC C3 C4 sing N N 74
BGC C3 O3 sing N N 75
BGC C3 H3 sing N N 76
BGC C4 C5 sing N N 77
BGC C4 O4 sing N N 78
BGC C4 H4 sing N N 79
BGC C5 C6 sing N N 80
BGC C5 O5 sing N N 81
BGC C5 H5 sing N N 82
BGC C6 O6 sing N N 83
BGC C6 H61 sing N N 84
BGC C6 H62 sing N N 85
BGC C1 O1 sing N N 86
BGC C1 O5 sing N N 87
BGC C1 H1 sing N N 88
BGC O1 HO1 sing N N 89
BGC O2 HO2 sing N N 90
BGC O3 HO3 sing N N 91
BGC O4 HO4 sing N N 92
BGC O6 HO6 sing N N 93
CEQ SI1 C2 sing N N 94
CEQ SI1 C3 sing N N 95
CEQ SI1 C4 sing N N 96
CEQ SI1 C5 sing N N 97
CEQ C2 H21 sing N N 98
CEQ C2 H22 sing N N 99
CEQ C2 H23 sing N N 100
CEQ C3 H31 sing N N 101
CEQ C3 H32 sing N N 102
CEQ C3 H33 sing N N 103
CEQ C4 H41 sing N N 104
CEQ C4 H42 sing N N 105
CEQ C4 H43 sing N N 106
CEQ C5 C6 sing N N 107
CEQ C5 H51 sing N N 108
CEQ C5 H52 sing N N 109
CEQ C6 H61 sing N N 110
CEQ C6 H62 sing N N 111
CEQ C6 H63 sing N N 112
CYS N CA sing N N 113
CYS N H sing N N 114
CYS N H2 sing N N 115
CYS CA C sing N N 116
CYS CA CB sing N N 117
CYS CA HA sing N N 118
CYS C O doub N N 119
CYS C OXT sing N N 120
CYS CB SG sing N N 121
CYS CB HB2 sing N N 122
CYS CB HB3 sing N N 123
CYS SG HG sing N N 124
CYS OXT HXT sing N N 125
GAL C1 C2 sing N N 126
GAL C1 O1 sing N N 127
GAL C1 O5 sing N N 128
GAL C1 H1 sing N N 129
GAL C2 C3 sing N N 130
GAL C2 O2 sing N N 131
GAL C2 H2 sing N N 132
GAL C3 C4 sing N N 133
GAL C3 O3 sing N N 134
GAL C3 H3 sing N N 135
GAL C4 C5 sing N N 136
GAL C4 O4 sing N N 137
GAL C4 H4 sing N N 138
GAL C5 C6 sing N N 139
GAL C5 O5 sing N N 140
GAL C5 H5 sing N N 141
GAL C6 O6 sing N N 142
GAL C6 H61 sing N N 143
GAL C6 H62 sing N N 144
GAL O1 HO1 sing N N 145
GAL O2 HO2 sing N N 146
GAL O3 HO3 sing N N 147
GAL O4 HO4 sing N N 148
GAL O6 HO6 sing N N 149
GLN N CA sing N N 150
GLN N H sing N N 151
GLN N H2 sing N N 152
GLN CA C sing N N 153
GLN CA CB sing N N 154
GLN CA HA sing N N 155
GLN C O doub N N 156
GLN C OXT sing N N 157
GLN CB CG sing N N 158
GLN CB HB2 sing N N 159
GLN CB HB3 sing N N 160
GLN CG CD sing N N 161
GLN CG HG2 sing N N 162
GLN CG HG3 sing N N 163
GLN CD OE1 doub N N 164
GLN CD NE2 sing N N 165
GLN NE2 HE21 sing N N 166
GLN NE2 HE22 sing N N 167
GLN OXT HXT sing N N 168
GLU N CA sing N N 169
GLU N H sing N N 170
GLU N H2 sing N N 171
GLU CA C sing N N 172
GLU CA CB sing N N 173
GLU CA HA sing N N 174
GLU C O doub N N 175
GLU C OXT sing N N 176
GLU CB CG sing N N 177
GLU CB HB2 sing N N 178
GLU CB HB3 sing N N 179
GLU CG CD sing N N 180
GLU CG HG2 sing N N 181
GLU CG HG3 sing N N 182
GLU CD OE1 doub N N 183
GLU CD OE2 sing N N 184
GLU OE2 HE2 sing N N 185
GLU OXT HXT sing N N 186
GLY N CA sing N N 187
GLY N H sing N N 188
GLY N H2 sing N N 189
GLY CA C sing N N 190
GLY CA HA2 sing N N 191
GLY CA HA3 sing N N 192
GLY C O doub N N 193
GLY C OXT sing N N 194
GLY OXT HXT sing N N 195
HIS N CA sing N N 196
HIS N H sing N N 197
HIS N H2 sing N N 198
HIS CA C sing N N 199
HIS CA CB sing N N 200
HIS CA HA sing N N 201
HIS C O doub N N 202
HIS C OXT sing N N 203
HIS CB CG sing N N 204
HIS CB HB2 sing N N 205
HIS CB HB3 sing N N 206
HIS CG ND1 sing Y N 207
HIS CG CD2 doub Y N 208
HIS ND1 CE1 doub Y N 209
HIS ND1 HD1 sing N N 210
HIS CD2 NE2 sing Y N 211
HIS CD2 HD2 sing N N 212
HIS CE1 NE2 sing Y N 213
HIS CE1 HE1 sing N N 214
HIS NE2 HE2 sing N N 215
HIS OXT HXT sing N N 216
HOH O H1 sing N N 217
HOH O H2 sing N N 218
ILE N CA sing N N 219
ILE N H sing N N 220
ILE N H2 sing N N 221
ILE CA C sing N N 222
ILE CA CB sing N N 223
ILE CA HA sing N N 224
ILE C O doub N N 225
ILE C OXT sing N N 226
ILE CB CG1 sing N N 227
ILE CB CG2 sing N N 228
ILE CB HB sing N N 229
ILE CG1 CD1 sing N N 230
ILE CG1 HG12 sing N N 231
ILE CG1 HG13 sing N N 232
ILE CG2 HG21 sing N N 233
ILE CG2 HG22 sing N N 234
ILE CG2 HG23 sing N N 235
ILE CD1 HD11 sing N N 236
ILE CD1 HD12 sing N N 237
ILE CD1 HD13 sing N N 238
ILE OXT HXT sing N N 239
LEU N CA sing N N 240
LEU N H sing N N 241
LEU N H2 sing N N 242
LEU CA C sing N N 243
LEU CA CB sing N N 244
LEU CA HA sing N N 245
LEU C O doub N N 246
LEU C OXT sing N N 247
LEU CB CG sing N N 248
LEU CB HB2 sing N N 249
LEU CB HB3 sing N N 250
LEU CG CD1 sing N N 251
LEU CG CD2 sing N N 252
LEU CG HG sing N N 253
LEU CD1 HD11 sing N N 254
LEU CD1 HD12 sing N N 255
LEU CD1 HD13 sing N N 256
LEU CD2 HD21 sing N N 257
LEU CD2 HD22 sing N N 258
LEU CD2 HD23 sing N N 259
LEU OXT HXT sing N N 260
LYS N CA sing N N 261
LYS N H sing N N 262
LYS N H2 sing N N 263
LYS CA C sing N N 264
LYS CA CB sing N N 265
LYS CA HA sing N N 266
LYS C O doub N N 267
LYS C OXT sing N N 268
LYS CB CG sing N N 269
LYS CB HB2 sing N N 270
LYS CB HB3 sing N N 271
LYS CG CD sing N N 272
LYS CG HG2 sing N N 273
LYS CG HG3 sing N N 274
LYS CD CE sing N N 275
LYS CD HD2 sing N N 276
LYS CD HD3 sing N N 277
LYS CE NZ sing N N 278
LYS CE HE2 sing N N 279
LYS CE HE3 sing N N 280
LYS NZ HZ1 sing N N 281
LYS NZ HZ2 sing N N 282
LYS NZ HZ3 sing N N 283
LYS OXT HXT sing N N 284
MET N CA sing N N 285
MET N H sing N N 286
MET N H2 sing N N 287
MET CA C sing N N 288
MET CA CB sing N N 289
MET CA HA sing N N 290
MET C O doub N N 291
MET C OXT sing N N 292
MET CB CG sing N N 293
MET CB HB2 sing N N 294
MET CB HB3 sing N N 295
MET CG SD sing N N 296
MET CG HG2 sing N N 297
MET CG HG3 sing N N 298
MET SD CE sing N N 299
MET CE HE1 sing N N 300
MET CE HE2 sing N N 301
MET CE HE3 sing N N 302
MET OXT HXT sing N N 303
NAG C1 C2 sing N N 304
NAG C1 O1 sing N N 305
NAG C1 O5 sing N N 306
NAG C1 H1 sing N N 307
NAG C2 C3 sing N N 308
NAG C2 N2 sing N N 309
NAG C2 H2 sing N N 310
NAG C3 C4 sing N N 311
NAG C3 O3 sing N N 312
NAG C3 H3 sing N N 313
NAG C4 C5 sing N N 314
NAG C4 O4 sing N N 315
NAG C4 H4 sing N N 316
NAG C5 C6 sing N N 317
NAG C5 O5 sing N N 318
NAG C5 H5 sing N N 319
NAG C6 O6 sing N N 320
NAG C6 H61 sing N N 321
NAG C6 H62 sing N N 322
NAG C7 C8 sing N N 323
NAG C7 N2 sing N N 324
NAG C7 O7 doub N N 325
NAG C8 H81 sing N N 326
NAG C8 H82 sing N N 327
NAG C8 H83 sing N N 328
NAG N2 HN2 sing N N 329
NAG O1 HO1 sing N N 330
NAG O3 HO3 sing N N 331
NAG O4 HO4 sing N N 332
NAG O6 HO6 sing N N 333
NGA C1 C2 sing N N 334
NGA C1 O1 sing N N 335
NGA C1 O5 sing N N 336
NGA C1 H1 sing N N 337
NGA C2 C3 sing N N 338
NGA C2 N2 sing N N 339
NGA C2 H2 sing N N 340
NGA C3 C4 sing N N 341
NGA C3 O3 sing N N 342
NGA C3 H3 sing N N 343
NGA C4 C5 sing N N 344
NGA C4 O4 sing N N 345
NGA C4 H4 sing N N 346
NGA C5 C6 sing N N 347
NGA C5 O5 sing N N 348
NGA C5 H5 sing N N 349
NGA C6 O6 sing N N 350
NGA C6 H61 sing N N 351
NGA C6 H62 sing N N 352
NGA C7 C8 sing N N 353
NGA C7 N2 sing N N 354
NGA C7 O7 doub N N 355
NGA C8 H81 sing N N 356
NGA C8 H82 sing N N 357
NGA C8 H83 sing N N 358
NGA N2 HN2 sing N N 359
NGA O1 HO1 sing N N 360
NGA O3 HO3 sing N N 361
NGA O4 HO4 sing N N 362
NGA O6 HO6 sing N N 363
PHE N CA sing N N 364
PHE N H sing N N 365
PHE N H2 sing N N 366
PHE CA C sing N N 367
PHE CA CB sing N N 368
PHE CA HA sing N N 369
PHE C O doub N N 370
PHE C OXT sing N N 371
PHE CB CG sing N N 372
PHE CB HB2 sing N N 373
PHE CB HB3 sing N N 374
PHE CG CD1 doub Y N 375
PHE CG CD2 sing Y N 376
PHE CD1 CE1 sing Y N 377
PHE CD1 HD1 sing N N 378
PHE CD2 CE2 doub Y N 379
PHE CD2 HD2 sing N N 380
PHE CE1 CZ doub Y N 381
PHE CE1 HE1 sing N N 382
PHE CE2 CZ sing Y N 383
PHE CE2 HE2 sing N N 384
PHE CZ HZ sing N N 385
PHE OXT HXT sing N N 386
PRO N CA sing N N 387
PRO N CD sing N N 388
PRO N H sing N N 389
PRO CA C sing N N 390
PRO CA CB sing N N 391
PRO CA HA sing N N 392
PRO C O doub N N 393
PRO C OXT sing N N 394
PRO CB CG sing N N 395
PRO CB HB2 sing N N 396
PRO CB HB3 sing N N 397
PRO CG CD sing N N 398
PRO CG HG2 sing N N 399
PRO CG HG3 sing N N 400
PRO CD HD2 sing N N 401
PRO CD HD3 sing N N 402
PRO OXT HXT sing N N 403
SER N CA sing N N 404
SER N H sing N N 405
SER N H2 sing N N 406
SER CA C sing N N 407
SER CA CB sing N N 408
SER CA HA sing N N 409
SER C O doub N N 410
SER C OXT sing N N 411
SER CB OG sing N N 412
SER CB HB2 sing N N 413
SER CB HB3 sing N N 414
SER OG HG sing N N 415
SER OXT HXT sing N N 416
SIA C1 C2 sing N N 417
SIA C1 O1A doub N N 418
SIA C1 O1B sing N N 419
SIA C2 C3 sing N N 420
SIA C2 O2 sing N N 421
SIA C2 O6 sing N N 422
SIA C3 C4 sing N N 423
SIA C3 H32 sing N N 424
SIA C3 H31 sing N N 425
SIA C4 C5 sing N N 426
SIA C4 O4 sing N N 427
SIA C4 H4 sing N N 428
SIA C5 C6 sing N N 429
SIA C5 N5 sing N N 430
SIA C5 H5 sing N N 431
SIA C6 C7 sing N N 432
SIA C6 O6 sing N N 433
SIA C6 H6 sing N N 434
SIA C7 C8 sing N N 435
SIA C7 O7 sing N N 436
SIA C7 H7 sing N N 437
SIA C8 C9 sing N N 438
SIA C8 O8 sing N N 439
SIA C8 H8 sing N N 440
SIA C9 O9 sing N N 441
SIA C9 H92 sing N N 442
SIA C9 H91 sing N N 443
SIA C10 C11 sing N N 444
SIA C10 N5 sing N N 445
SIA C10 O10 doub N N 446
SIA C11 H111 sing N N 447
SIA C11 H113 sing N N 448
SIA C11 H112 sing N N 449
SIA N5 HN5 sing N N 450
SIA O1B HO1B sing N N 451
SIA O2 HO2 sing N N 452
SIA O4 HO4 sing N N 453
SIA O7 HO7 sing N N 454
SIA O8 HO8 sing N N 455
SIA O9 HO9 sing N N 456
THR N CA sing N N 457
THR N H sing N N 458
THR N H2 sing N N 459
THR CA C sing N N 460
THR CA CB sing N N 461
THR CA HA sing N N 462
THR C O doub N N 463
THR C OXT sing N N 464
THR CB OG1 sing N N 465
THR CB CG2 sing N N 466
THR CB HB sing N N 467
THR OG1 HG1 sing N N 468
THR CG2 HG21 sing N N 469
THR CG2 HG22 sing N N 470
THR CG2 HG23 sing N N 471
THR OXT HXT sing N N 472
TRP N CA sing N N 473
TRP N H sing N N 474
TRP N H2 sing N N 475
TRP CA C sing N N 476
TRP CA CB sing N N 477
TRP CA HA sing N N 478
TRP C O doub N N 479
TRP C OXT sing N N 480
TRP CB CG sing N N 481
TRP CB HB2 sing N N 482
TRP CB HB3 sing N N 483
TRP CG CD1 doub Y N 484
TRP CG CD2 sing Y N 485
TRP CD1 NE1 sing Y N 486
TRP CD1 HD1 sing N N 487
TRP CD2 CE2 doub Y N 488
TRP CD2 CE3 sing Y N 489
TRP NE1 CE2 sing Y N 490
TRP NE1 HE1 sing N N 491
TRP CE2 CZ2 sing Y N 492
TRP CE3 CZ3 doub Y N 493
TRP CE3 HE3 sing N N 494
TRP CZ2 CH2 doub Y N 495
TRP CZ2 HZ2 sing N N 496
TRP CZ3 CH2 sing Y N 497
TRP CZ3 HZ3 sing N N 498
TRP CH2 HH2 sing N N 499
TRP OXT HXT sing N N 500
TYR N CA sing N N 501
TYR N H sing N N 502
TYR N H2 sing N N 503
TYR CA C sing N N 504
TYR CA CB sing N N 505
TYR CA HA sing N N 506
TYR C O doub N N 507
TYR C OXT sing N N 508
TYR CB CG sing N N 509
TYR CB HB2 sing N N 510
TYR CB HB3 sing N N 511
TYR CG CD1 doub Y N 512
TYR CG CD2 sing Y N 513
TYR CD1 CE1 sing Y N 514
TYR CD1 HD1 sing N N 515
TYR CD2 CE2 doub Y N 516
TYR CD2 HD2 sing N N 517
TYR CE1 CZ doub Y N 518
TYR CE1 HE1 sing N N 519
TYR CE2 CZ sing Y N 520
TYR CE2 HE2 sing N N 521
TYR CZ OH sing N N 522
TYR OH HH sing N N 523
TYR OXT HXT sing N N 524
VAL N CA sing N N 525
VAL N H sing N N 526
VAL N H2 sing N N 527
VAL CA C sing N N 528
VAL CA CB sing N N 529
VAL CA HA sing N N 530
VAL C O doub N N 531
VAL C OXT sing N N 532
VAL CB CG1 sing N N 533
VAL CB CG2 sing N N 534
VAL CB HB sing N N 535
VAL CG1 HG11 sing N N 536
VAL CG1 HG12 sing N N 537
VAL CG1 HG13 sing N N 538
VAL CG2 HG21 sing N N 539
VAL CG2 HG22 sing N N 540
VAL CG2 HG23 sing N N 541
VAL OXT HXT sing N N 542
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 GAL 2 n
2 SIA 3 n
2 SIA 4 n
2 NGA 5 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1O7V
_pdbx_initial_refinement_model.details 'PDB ENTRY 1O7V'
#
_atom_sites.entry_id 2HRL
_atom_sites.fract_transf_matrix[1][1] 0.021729
_atom_sites.fract_transf_matrix[1][2] 0.012545
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025091
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.009392
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
SI
#
loop_