data_2HRL # _entry.id 2HRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HRL pdb_00002hrl 10.2210/pdb2hrl/pdb RCSB RCSB038680 ? ? WWPDB D_1000038680 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-10-25 6 'Structure model' 2 2 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' 14 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen 18 5 'Structure model' chem_comp 19 5 'Structure model' chem_comp_atom 20 5 'Structure model' chem_comp_bond 21 5 'Structure model' database_2 22 5 'Structure model' pdbx_initial_refinement_model 23 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 24 6 'Structure model' pdbx_entry_details 25 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.pdbx_role' 20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_chem_comp.pdbx_synonyms' 35 5 'Structure model' '_database_2.pdbx_DOI' 36 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HRL _pdbx_database_status.recvd_initial_deposition_date 2006-07-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1O7S 'The same protein in APO form' unspecified PDB 1O7V 'The same protein in APO form' unspecified PDB 2DF3 'The same protein in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl' unspecified PDB 2G5R 'The same protein in complex with methyl-9-(aminooxalyl-amino)-9-deoxyNeu5Ac (oxamido-Neu5Ac)' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Attrill, H.' 1 'Imamura, A.' 2 'Sharma, R.S.' 3 'Kiso, M.' 4 'Crocker, P.R.' 5 'van Aalten, D.M.F.' 6 # _citation.id primary _citation.title 'Siglec-7 Undergoes a Major Conformational Change When Complexed with the {alpha}(2,8)-Disialylganglioside GT1b' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 32774 _citation.page_last 32783 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16895906 _citation.pdbx_database_id_DOI 10.1074/jbc.M601714200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Attrill, H.' 1 ? primary 'Imamura, A.' 2 ? primary 'Sharma, R.S.' 3 ? primary 'Kiso, M.' 4 ? primary 'Crocker, P.R.' 5 ? primary 'van Aalten, D.M.F.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sialic acid-binding Ig-like lectin 7' 14655.292 1 ? ? 'Ig-like V-type, N-terminal domain, residues 18-144' ? 2 branched man ;N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose ; 1127.999 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn ETHYL-TRIMETHYL-SILANE 102.250 1 ? ? ? ? 5 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Siglec-7, QA79 membrane protein, Adhesion inhibitory receptor molecule 1, AIRM-1, p75, D-siglec, CDw328 antigen' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT ; _entity_poly.pdbx_seq_one_letter_code_can ;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 ETHYL-TRIMETHYL-SILANE CEQ 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 LYS n 1 4 SER n 1 5 ASN n 1 6 ARG n 1 7 LYS n 1 8 ASP n 1 9 TYR n 1 10 SER n 1 11 LEU n 1 12 THR n 1 13 MET n 1 14 GLN n 1 15 SER n 1 16 SER n 1 17 VAL n 1 18 THR n 1 19 VAL n 1 20 GLN n 1 21 GLU n 1 22 GLY n 1 23 MET n 1 24 CYS n 1 25 VAL n 1 26 HIS n 1 27 VAL n 1 28 ARG n 1 29 CYS n 1 30 SER n 1 31 PHE n 1 32 SER n 1 33 TYR n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 SER n 1 38 GLN n 1 39 THR n 1 40 ASP n 1 41 SER n 1 42 ASP n 1 43 PRO n 1 44 VAL n 1 45 HIS n 1 46 GLY n 1 47 TYR n 1 48 TRP n 1 49 PHE n 1 50 ARG n 1 51 ALA n 1 52 GLY n 1 53 ASN n 1 54 ASP n 1 55 ILE n 1 56 SER n 1 57 TRP n 1 58 LYS n 1 59 ALA n 1 60 PRO n 1 61 VAL n 1 62 ALA n 1 63 THR n 1 64 ASN n 1 65 ASN n 1 66 PRO n 1 67 ALA n 1 68 TRP n 1 69 ALA n 1 70 VAL n 1 71 GLN n 1 72 GLU n 1 73 GLU n 1 74 THR n 1 75 ARG n 1 76 ASP n 1 77 ARG n 1 78 PHE n 1 79 HIS n 1 80 LEU n 1 81 LEU n 1 82 GLY n 1 83 ASP n 1 84 PRO n 1 85 GLN n 1 86 THR n 1 87 LYS n 1 88 ASN n 1 89 CYS n 1 90 THR n 1 91 LEU n 1 92 SER n 1 93 ILE n 1 94 ARG n 1 95 ASP n 1 96 ALA n 1 97 ARG n 1 98 MET n 1 99 SER n 1 100 ASP n 1 101 ALA n 1 102 GLY n 1 103 ARG n 1 104 TYR n 1 105 PHE n 1 106 PHE n 1 107 ARG n 1 108 MET n 1 109 GLU n 1 110 LYS n 1 111 GLY n 1 112 ASN n 1 113 ILE n 1 114 LYS n 1 115 TRP n 1 116 ASN n 1 117 TYR n 1 118 LYS n 1 119 TYR n 1 120 ASP n 1 121 GLN n 1 122 LEU n 1 123 SER n 1 124 VAL n 1 125 ASN n 1 126 VAL n 1 127 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Chinese hamster' _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'CHO Lec1' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEF-Siglec-7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DNeup5Aca2-8DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 ;WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-3-4/a4-b1_b3-c2_b4-e1_c8-d2 ; WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{[(8+2)][a-D-Neup5Ac]{}}[(4+1)][b-D-3-deoxy-GalpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ? 3 2 4 SIA C2 O2 3 SIA O8 HO8 sing ? 4 2 5 NGA C1 O1 2 GAL O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CEQ non-polymer . ETHYL-TRIMETHYL-SILANE ? 'C5 H14 Si' 102.250 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose ;N-acetyl-beta-D-galactosamine; 2-acetamido-2-deoxy-beta-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-D-GALACTOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 18 ? ? ? A . n A 1 2 GLN 2 19 ? ? ? A . n A 1 3 LYS 3 20 ? ? ? A . n A 1 4 SER 4 21 ? ? ? A . n A 1 5 ASN 5 22 ? ? ? A . n A 1 6 ARG 6 23 ? ? ? A . n A 1 7 LYS 7 24 ? ? ? A . n A 1 8 ASP 8 25 25 ASP ALA A . n A 1 9 TYR 9 26 26 TYR TYR A . n A 1 10 SER 10 27 27 SER SER A . n A 1 11 LEU 11 28 28 LEU LEU A . n A 1 12 THR 12 29 29 THR THR A . n A 1 13 MET 13 30 30 MET MET A . n A 1 14 GLN 14 31 31 GLN GLN A . n A 1 15 SER 15 32 32 SER SER A . n A 1 16 SER 16 33 33 SER SER A . n A 1 17 VAL 17 34 34 VAL VAL A . n A 1 18 THR 18 35 35 THR THR A . n A 1 19 VAL 19 36 36 VAL VAL A . n A 1 20 GLN 20 37 37 GLN GLN A . n A 1 21 GLU 21 38 38 GLU GLU A . n A 1 22 GLY 22 39 39 GLY GLY A . n A 1 23 MET 23 40 40 MET MET A . n A 1 24 CYS 24 41 41 CYS CYS A . n A 1 25 VAL 25 42 42 VAL VAL A . n A 1 26 HIS 26 43 43 HIS HIS A . n A 1 27 VAL 27 44 44 VAL VAL A . n A 1 28 ARG 28 45 45 ARG ARG A . n A 1 29 CYS 29 46 46 CYS CYS A . n A 1 30 SER 30 47 47 SER SER A . n A 1 31 PHE 31 48 48 PHE PHE A . n A 1 32 SER 32 49 49 SER SER A . n A 1 33 TYR 33 50 50 TYR TYR A . n A 1 34 PRO 34 51 51 PRO PRO A . n A 1 35 VAL 35 52 52 VAL VAL A . n A 1 36 ASP 36 53 ? ? ? A . n A 1 37 SER 37 54 ? ? ? A . n A 1 38 GLN 38 55 ? ? ? A . n A 1 39 THR 39 56 ? ? ? A . n A 1 40 ASP 40 57 57 ASP ALA A . n A 1 41 SER 41 58 58 SER SER A . n A 1 42 ASP 42 59 59 ASP ASP A . n A 1 43 PRO 43 60 60 PRO PRO A . n A 1 44 VAL 44 61 61 VAL VAL A . n A 1 45 HIS 45 62 62 HIS HIS A . n A 1 46 GLY 46 63 63 GLY GLY A . n A 1 47 TYR 47 64 64 TYR TYR A . n A 1 48 TRP 48 65 65 TRP TRP A . n A 1 49 PHE 49 66 66 PHE PHE A . n A 1 50 ARG 50 67 67 ARG ARG A . n A 1 51 ALA 51 68 68 ALA ALA A . n A 1 52 GLY 52 69 69 GLY GLY A . n A 1 53 ASN 53 70 70 ASN ASN A . n A 1 54 ASP 54 71 71 ASP ASP A . n A 1 55 ILE 55 72 72 ILE ILE A . n A 1 56 SER 56 73 73 SER SER A . n A 1 57 TRP 57 74 74 TRP TRP A . n A 1 58 LYS 58 75 75 LYS ALA A . n A 1 59 ALA 59 76 76 ALA ALA A . n A 1 60 PRO 60 77 77 PRO PRO A . n A 1 61 VAL 61 78 78 VAL VAL A . n A 1 62 ALA 62 79 79 ALA ALA A . n A 1 63 THR 63 80 80 THR THR A . n A 1 64 ASN 64 81 81 ASN ASN A . n A 1 65 ASN 65 82 82 ASN ASN A . n A 1 66 PRO 66 83 83 PRO PRO A . n A 1 67 ALA 67 84 84 ALA ALA A . n A 1 68 TRP 68 85 85 TRP TRP A . n A 1 69 ALA 69 86 86 ALA ALA A . n A 1 70 VAL 70 87 87 VAL VAL A . n A 1 71 GLN 71 88 88 GLN GLN A . n A 1 72 GLU 72 89 89 GLU GLU A . n A 1 73 GLU 73 90 90 GLU GLU A . n A 1 74 THR 74 91 91 THR THR A . n A 1 75 ARG 75 92 92 ARG ARG A . n A 1 76 ASP 76 93 93 ASP ASP A . n A 1 77 ARG 77 94 94 ARG ARG A . n A 1 78 PHE 78 95 95 PHE PHE A . n A 1 79 HIS 79 96 96 HIS HIS A . n A 1 80 LEU 80 97 97 LEU LEU A . n A 1 81 LEU 81 98 98 LEU LEU A . n A 1 82 GLY 82 99 99 GLY GLY A . n A 1 83 ASP 83 100 100 ASP ASP A . n A 1 84 PRO 84 101 101 PRO PRO A . n A 1 85 GLN 85 102 102 GLN GLN A . n A 1 86 THR 86 103 103 THR THR A . n A 1 87 LYS 87 104 104 LYS LYS A . n A 1 88 ASN 88 105 105 ASN ASN A . n A 1 89 CYS 89 106 106 CYS CYS A . n A 1 90 THR 90 107 107 THR THR A . n A 1 91 LEU 91 108 108 LEU LEU A . n A 1 92 SER 92 109 109 SER SER A . n A 1 93 ILE 93 110 110 ILE ILE A . n A 1 94 ARG 94 111 111 ARG ARG A . n A 1 95 ASP 95 112 112 ASP ASP A . n A 1 96 ALA 96 113 113 ALA ALA A . n A 1 97 ARG 97 114 114 ARG ARG A . n A 1 98 MET 98 115 115 MET MET A . n A 1 99 SER 99 116 116 SER SER A . n A 1 100 ASP 100 117 117 ASP ASP A . n A 1 101 ALA 101 118 118 ALA ALA A . n A 1 102 GLY 102 119 119 GLY GLY A . n A 1 103 ARG 103 120 120 ARG ARG A . n A 1 104 TYR 104 121 121 TYR TYR A . n A 1 105 PHE 105 122 122 PHE PHE A . n A 1 106 PHE 106 123 123 PHE PHE A . n A 1 107 ARG 107 124 124 ARG ARG A . n A 1 108 MET 108 125 125 MET MET A . n A 1 109 GLU 109 126 126 GLU GLU A . n A 1 110 LYS 110 127 127 LYS LYS A . n A 1 111 GLY 111 128 128 GLY GLY A . n A 1 112 ASN 112 129 129 ASN ASN A . n A 1 113 ILE 113 130 130 ILE ILE A . n A 1 114 LYS 114 131 131 LYS LYS A . n A 1 115 TRP 115 132 132 TRP TRP A . n A 1 116 ASN 116 133 133 ASN ASN A . n A 1 117 TYR 117 134 134 TYR TYR A . n A 1 118 LYS 118 135 135 LYS LYS A . n A 1 119 TYR 119 136 136 TYR TYR A . n A 1 120 ASP 120 137 137 ASP ASP A . n A 1 121 GLN 121 138 138 GLN GLN A . n A 1 122 LEU 122 139 139 LEU LEU A . n A 1 123 SER 123 140 140 SER SER A . n A 1 124 VAL 124 141 141 VAL VAL A . n A 1 125 ASN 125 142 142 ASN ASN A . n A 1 126 VAL 126 143 143 VAL VAL A . n A 1 127 THR 127 144 144 THR THR A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 D GLC 205 n B 2 GAL 2 B GAL 2 D GAL 203 n B 2 SIA 3 B SIA 3 D SIA 202 n B 2 SIA 4 B SIA 4 D SIA 201 n B 2 NGA 5 B NGA 5 D NGA 204 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 1 1 NAG NAG A . D 4 CEQ 1 206 206 CEQ TMS A . E 5 HOH 1 207 1 HOH HOH A . E 5 HOH 2 208 2 HOH HOH A . E 5 HOH 3 209 4 HOH HOH A . E 5 HOH 4 210 5 HOH HOH A . E 5 HOH 5 211 6 HOH HOH A . E 5 HOH 6 212 8 HOH HOH A . E 5 HOH 7 213 9 HOH HOH A . E 5 HOH 8 214 10 HOH HOH A . E 5 HOH 9 215 11 HOH HOH A . E 5 HOH 10 216 12 HOH HOH A . E 5 HOH 11 217 13 HOH HOH A . E 5 HOH 12 218 14 HOH HOH A . E 5 HOH 13 219 15 HOH HOH A . E 5 HOH 14 220 17 HOH HOH A . E 5 HOH 15 221 19 HOH HOH A . E 5 HOH 16 222 20 HOH HOH A . E 5 HOH 17 223 21 HOH HOH A . E 5 HOH 18 224 22 HOH HOH A . E 5 HOH 19 225 26 HOH HOH A . E 5 HOH 20 226 27 HOH HOH A . E 5 HOH 21 227 28 HOH HOH A . E 5 HOH 22 228 29 HOH HOH A . E 5 HOH 23 229 31 HOH HOH A . E 5 HOH 24 230 32 HOH HOH A . E 5 HOH 25 231 36 HOH HOH A . E 5 HOH 26 232 38 HOH HOH A . E 5 HOH 27 233 39 HOH HOH A . E 5 HOH 28 234 40 HOH HOH A . E 5 HOH 29 235 41 HOH HOH A . E 5 HOH 30 236 45 HOH HOH A . E 5 HOH 31 237 46 HOH HOH A . E 5 HOH 32 238 47 HOH HOH A . E 5 HOH 33 239 56 HOH HOH A . E 5 HOH 34 240 57 HOH HOH A . E 5 HOH 35 241 59 HOH HOH A . E 5 HOH 36 242 60 HOH HOH A . E 5 HOH 37 243 61 HOH HOH A . E 5 HOH 38 244 62 HOH HOH A . E 5 HOH 39 245 63 HOH HOH A . E 5 HOH 40 246 64 HOH HOH A . E 5 HOH 41 247 65 HOH HOH A . E 5 HOH 42 248 66 HOH HOH A . E 5 HOH 43 249 67 HOH HOH A . E 5 HOH 44 250 68 HOH HOH A . E 5 HOH 45 251 69 HOH HOH A . E 5 HOH 46 252 70 HOH HOH A . E 5 HOH 47 253 71 HOH HOH A . E 5 HOH 48 254 72 HOH HOH A . E 5 HOH 49 255 73 HOH HOH A . E 5 HOH 50 256 74 HOH HOH A . E 5 HOH 51 257 75 HOH HOH A . E 5 HOH 52 258 76 HOH HOH A . E 5 HOH 53 259 77 HOH HOH A . E 5 HOH 54 260 78 HOH HOH A . E 5 HOH 55 261 79 HOH HOH A . E 5 HOH 56 262 80 HOH HOH A . E 5 HOH 57 263 81 HOH HOH A . E 5 HOH 58 264 82 HOH HOH A . E 5 HOH 59 265 83 HOH HOH A . E 5 HOH 60 266 84 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 25 ? CG ? A ASP 8 CG 2 1 Y 1 A ASP 25 ? OD1 ? A ASP 8 OD1 3 1 Y 1 A ASP 25 ? OD2 ? A ASP 8 OD2 4 1 Y 0 A ARG 45 ? CG ? A ARG 28 CG 5 1 Y 0 A ARG 45 ? CD ? A ARG 28 CD 6 1 Y 0 A ARG 45 ? NE ? A ARG 28 NE 7 1 Y 0 A ARG 45 ? CZ ? A ARG 28 CZ 8 1 Y 0 A ARG 45 ? NH1 ? A ARG 28 NH1 9 1 Y 0 A ARG 45 ? NH2 ? A ARG 28 NH2 10 1 Y 1 A ASP 57 ? CG ? A ASP 40 CG 11 1 Y 1 A ASP 57 ? OD1 ? A ASP 40 OD1 12 1 Y 1 A ASP 57 ? OD2 ? A ASP 40 OD2 13 1 Y 1 A LYS 75 ? CG ? A LYS 58 CG 14 1 Y 1 A LYS 75 ? CD ? A LYS 58 CD 15 1 Y 1 A LYS 75 ? CE ? A LYS 58 CE 16 1 Y 1 A LYS 75 ? NZ ? A LYS 58 NZ 17 1 Y 0 A ARG 92 ? NE ? A ARG 75 NE 18 1 Y 0 A ARG 92 ? CZ ? A ARG 75 CZ 19 1 Y 0 A ARG 92 ? NH1 ? A ARG 75 NH1 20 1 Y 0 A ARG 92 ? NH2 ? A ARG 75 NH2 21 1 N 1 B NGA 5 ? O3 ? B NGA 5 O3 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 2HRL _cell.length_a 46.021 _cell.length_b 46.021 _cell.length_c 106.474 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HRL _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HRL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '200mM sodium acetate, 100mM sodium cacodylate, 30 % w/v PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-04-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9756 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9756 # _reflns.entry_id 2HRL _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 15 _reflns.number_all ? _reflns.number_obs 11626 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.52 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 11626 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HRL _refine.ls_number_reflns_obs 11045 _refine.ls_number_reflns_all 11626 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 99.35 _refine.ls_R_factor_obs 0.19678 _refine.ls_R_factor_all 0.196 _refine.ls_R_factor_R_work 0.19505 _refine.ls_R_factor_R_free 0.23447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 551 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 24.459 _refine.aniso_B[1][1] -0.96 _refine.aniso_B[2][2] -0.96 _refine.aniso_B[3][3] 1.43 _refine.aniso_B[1][2] -0.48 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1O7V' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.152 _refine.pdbx_overall_ESU_R_Free 0.141 _refine.overall_SU_ML 0.101 _refine.overall_SU_B 3.430 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 933 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 96 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1089 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1095 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.486 2.040 ? 1508 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.613 5.000 ? 124 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 171 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 820 'X-RAY DIFFRACTION' ? r_nbd_refined 0.189 0.200 ? 408 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.191 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.192 0.200 ? 12 'X-RAY DIFFRACTION' ? r_mcbond_it 1.331 3.000 ? 608 'X-RAY DIFFRACTION' ? r_mcangle_it 2.112 3.200 ? 984 'X-RAY DIFFRACTION' ? r_scbond_it 2.057 4.000 ? 487 'X-RAY DIFFRACTION' ? r_scangle_it 2.573 3.500 ? 524 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.851 _refine_ls_shell.d_res_low 1.899 _refine_ls_shell.number_reflns_R_work 782 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2HRL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2HRL _struct.title 'Siglec-7 in complex with GT1b' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HRL _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Ig-like domain, Siglec, Ganglioside, Siglec-7, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SIGL7_HUMAN _struct_ref.pdbx_db_accession Q9Y286 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GQKSNRKDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL LGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVT ; _struct_ref.pdbx_align_begin 18 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y286 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 18 _struct_ref_seq.pdbx_auth_seq_align_end 144 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 67 ? GLU A 72 ? ALA A 84 GLU A 89 1 ? 6 HELX_P HELX_P2 2 ASP A 83 ? LYS A 87 ? ASP A 100 LYS A 104 5 ? 5 HELX_P HELX_P3 3 ARG A 97 ? ALA A 101 ? ARG A 114 ALA A 118 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 29 SG A ? ? 1_555 A CYS 89 SG ? ? A CYS 46 A CYS 106 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 29 SG B ? ? 1_555 A CYS 89 SG ? ? A CYS 46 A CYS 106 1_555 ? ? ? ? ? ? ? 2.046 ? ? covale1 covale one ? C NAG . C1 ? ? ? 1_555 A ASN 88 ND2 ? ? A NAG 1 A ASN 105 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale2 covale one ? D CEQ . C6 ? ? ? 1_555 B BGC . O1 ? ? A CEQ 206 B BGC 1 1_555 ? ? ? ? ? ? ? 1.463 ? ? covale3 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale4 covale both ? B GAL . O3 ? ? ? 1_555 B SIA . C2 ? ? B GAL 2 B SIA 3 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale5 covale both ? B GAL . O4 ? ? ? 1_555 B NGA . C1 ? ? B GAL 2 B NGA 5 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale6 covale both ? B SIA . O8 ? ? ? 1_555 B SIA . C2 ? ? B SIA 3 B SIA 4 1_555 ? ? ? ? ? ? ? 1.458 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 88 ? NAG A 1 ? 1_555 ASN A 105 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS A 29 A CYS A 89 ? CYS A 46 ? 1_555 CYS A 106 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 29 B CYS A 89 ? CYS A 46 ? 1_555 CYS A 106 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 10 ? MET A 13 ? SER A 27 MET A 30 A 2 CYS A 29 ? SER A 32 ? CYS A 46 SER A 49 B 1 SER A 16 ? GLN A 20 ? SER A 33 GLN A 37 B 2 LEU A 122 ? THR A 127 ? LEU A 139 THR A 144 B 3 GLY A 102 ? LYS A 110 ? GLY A 119 LYS A 127 B 4 VAL A 44 ? ARG A 50 ? VAL A 61 ARG A 67 B 5 ALA A 62 ? THR A 63 ? ALA A 79 THR A 80 C 1 SER A 16 ? GLN A 20 ? SER A 33 GLN A 37 C 2 LEU A 122 ? THR A 127 ? LEU A 139 THR A 144 C 3 GLY A 102 ? LYS A 110 ? GLY A 119 LYS A 127 C 4 ILE A 113 ? ASN A 116 ? ILE A 130 ASN A 133 D 1 VAL A 25 ? VAL A 27 ? VAL A 42 VAL A 44 D 2 LEU A 91 ? ILE A 93 ? LEU A 108 ILE A 110 D 3 PHE A 78 ? LEU A 80 ? PHE A 95 LEU A 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 12 ? N THR A 29 O SER A 30 ? O SER A 47 B 1 2 N VAL A 19 ? N VAL A 36 O ASN A 125 ? O ASN A 142 B 2 3 O VAL A 124 ? O VAL A 141 N GLY A 102 ? N GLY A 119 B 3 4 O GLU A 109 ? O GLU A 126 N HIS A 45 ? N HIS A 62 B 4 5 N TRP A 48 ? N TRP A 65 O ALA A 62 ? O ALA A 79 C 1 2 N VAL A 19 ? N VAL A 36 O ASN A 125 ? O ASN A 142 C 2 3 O VAL A 124 ? O VAL A 141 N GLY A 102 ? N GLY A 119 C 3 4 N LYS A 110 ? N LYS A 127 O ILE A 113 ? O ILE A 130 D 1 2 N VAL A 27 ? N VAL A 44 O LEU A 91 ? O LEU A 108 D 2 3 O SER A 92 ? O SER A 109 N HIS A 79 ? N HIS A 96 # _pdbx_entry_details.entry_id 2HRL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A ARG 45 ? ? CG A ARG 45 ? ? 1.317 1.521 -0.204 0.027 N 2 1 CD A ARG 92 ? ? NE A ARG 92 ? ? 0.971 1.460 -0.489 0.017 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CD _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 92 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 NE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 92 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CZ _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 92 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 143.74 _pdbx_validate_rmsd_angle.angle_target_value 123.60 _pdbx_validate_rmsd_angle.angle_deviation 20.14 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.40 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 92 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.143 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 88 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 105 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 18 ? A GLY 1 2 1 Y 1 A GLN 19 ? A GLN 2 3 1 Y 1 A LYS 20 ? A LYS 3 4 1 Y 1 A SER 21 ? A SER 4 5 1 Y 1 A ASN 22 ? A ASN 5 6 1 Y 1 A ARG 23 ? A ARG 6 7 1 Y 1 A LYS 24 ? A LYS 7 8 1 Y 1 A ASP 53 ? A ASP 36 9 1 Y 1 A SER 54 ? A SER 37 10 1 Y 1 A GLN 55 ? A GLN 38 11 1 Y 1 A THR 56 ? A THR 39 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CEQ SI1 SI N N 98 CEQ C2 C N N 99 CEQ C3 C N N 100 CEQ C4 C N N 101 CEQ C5 C N N 102 CEQ C6 C N N 103 CEQ H21 H N N 104 CEQ H22 H N N 105 CEQ H23 H N N 106 CEQ H31 H N N 107 CEQ H32 H N N 108 CEQ H33 H N N 109 CEQ H41 H N N 110 CEQ H42 H N N 111 CEQ H43 H N N 112 CEQ H51 H N N 113 CEQ H52 H N N 114 CEQ H61 H N N 115 CEQ H62 H N N 116 CEQ H63 H N N 117 CYS N N N N 118 CYS CA C N R 119 CYS C C N N 120 CYS O O N N 121 CYS CB C N N 122 CYS SG S N N 123 CYS OXT O N N 124 CYS H H N N 125 CYS H2 H N N 126 CYS HA H N N 127 CYS HB2 H N N 128 CYS HB3 H N N 129 CYS HG H N N 130 CYS HXT H N N 131 GAL C1 C N R 132 GAL C2 C N R 133 GAL C3 C N S 134 GAL C4 C N R 135 GAL C5 C N R 136 GAL C6 C N N 137 GAL O1 O N N 138 GAL O2 O N N 139 GAL O3 O N N 140 GAL O4 O N N 141 GAL O5 O N N 142 GAL O6 O N N 143 GAL H1 H N N 144 GAL H2 H N N 145 GAL H3 H N N 146 GAL H4 H N N 147 GAL H5 H N N 148 GAL H61 H N N 149 GAL H62 H N N 150 GAL HO1 H N N 151 GAL HO2 H N N 152 GAL HO3 H N N 153 GAL HO4 H N N 154 GAL HO6 H N N 155 GLN N N N N 156 GLN CA C N S 157 GLN C C N N 158 GLN O O N N 159 GLN CB C N N 160 GLN CG C N N 161 GLN CD C N N 162 GLN OE1 O N N 163 GLN NE2 N N N 164 GLN OXT O N N 165 GLN H H N N 166 GLN H2 H N N 167 GLN HA H N N 168 GLN HB2 H N N 169 GLN HB3 H N N 170 GLN HG2 H N N 171 GLN HG3 H N N 172 GLN HE21 H N N 173 GLN HE22 H N N 174 GLN HXT H N N 175 GLU N N N N 176 GLU CA C N S 177 GLU C C N N 178 GLU O O N N 179 GLU CB C N N 180 GLU CG C N N 181 GLU CD C N N 182 GLU OE1 O N N 183 GLU OE2 O N N 184 GLU OXT O N N 185 GLU H H N N 186 GLU H2 H N N 187 GLU HA H N N 188 GLU HB2 H N N 189 GLU HB3 H N N 190 GLU HG2 H N N 191 GLU HG3 H N N 192 GLU HE2 H N N 193 GLU HXT H N N 194 GLY N N N N 195 GLY CA C N N 196 GLY C C N N 197 GLY O O N N 198 GLY OXT O N N 199 GLY H H N N 200 GLY H2 H N N 201 GLY HA2 H N N 202 GLY HA3 H N N 203 GLY HXT H N N 204 HIS N N N N 205 HIS CA C N S 206 HIS C C N N 207 HIS O O N N 208 HIS CB C N N 209 HIS CG C Y N 210 HIS ND1 N Y N 211 HIS CD2 C Y N 212 HIS CE1 C Y N 213 HIS NE2 N Y N 214 HIS OXT O N N 215 HIS H H N N 216 HIS H2 H N N 217 HIS HA H N N 218 HIS HB2 H N N 219 HIS HB3 H N N 220 HIS HD1 H N N 221 HIS HD2 H N N 222 HIS HE1 H N N 223 HIS HE2 H N N 224 HIS HXT H N N 225 HOH O O N N 226 HOH H1 H N N 227 HOH H2 H N N 228 ILE N N N N 229 ILE CA C N S 230 ILE C C N N 231 ILE O O N N 232 ILE CB C N S 233 ILE CG1 C N N 234 ILE CG2 C N N 235 ILE CD1 C N N 236 ILE OXT O N N 237 ILE H H N N 238 ILE H2 H N N 239 ILE HA H N N 240 ILE HB H N N 241 ILE HG12 H N N 242 ILE HG13 H N N 243 ILE HG21 H N N 244 ILE HG22 H N N 245 ILE HG23 H N N 246 ILE HD11 H N N 247 ILE HD12 H N N 248 ILE HD13 H N N 249 ILE HXT H N N 250 LEU N N N N 251 LEU CA C N S 252 LEU C C N N 253 LEU O O N N 254 LEU CB C N N 255 LEU CG C N N 256 LEU CD1 C N N 257 LEU CD2 C N N 258 LEU OXT O N N 259 LEU H H N N 260 LEU H2 H N N 261 LEU HA H N N 262 LEU HB2 H N N 263 LEU HB3 H N N 264 LEU HG H N N 265 LEU HD11 H N N 266 LEU HD12 H N N 267 LEU HD13 H N N 268 LEU HD21 H N N 269 LEU HD22 H N N 270 LEU HD23 H N N 271 LEU HXT H N N 272 LYS N N N N 273 LYS CA C N S 274 LYS C C N N 275 LYS O O N N 276 LYS CB C N N 277 LYS CG C N N 278 LYS CD C N N 279 LYS CE C N N 280 LYS NZ N N N 281 LYS OXT O N N 282 LYS H H N N 283 LYS H2 H N N 284 LYS HA H N N 285 LYS HB2 H N N 286 LYS HB3 H N N 287 LYS HG2 H N N 288 LYS HG3 H N N 289 LYS HD2 H N N 290 LYS HD3 H N N 291 LYS HE2 H N N 292 LYS HE3 H N N 293 LYS HZ1 H N N 294 LYS HZ2 H N N 295 LYS HZ3 H N N 296 LYS HXT H N N 297 MET N N N N 298 MET CA C N S 299 MET C C N N 300 MET O O N N 301 MET CB C N N 302 MET CG C N N 303 MET SD S N N 304 MET CE C N N 305 MET OXT O N N 306 MET H H N N 307 MET H2 H N N 308 MET HA H N N 309 MET HB2 H N N 310 MET HB3 H N N 311 MET HG2 H N N 312 MET HG3 H N N 313 MET HE1 H N N 314 MET HE2 H N N 315 MET HE3 H N N 316 MET HXT H N N 317 NAG C1 C N R 318 NAG C2 C N R 319 NAG C3 C N R 320 NAG C4 C N S 321 NAG C5 C N R 322 NAG C6 C N N 323 NAG C7 C N N 324 NAG C8 C N N 325 NAG N2 N N N 326 NAG O1 O N N 327 NAG O3 O N N 328 NAG O4 O N N 329 NAG O5 O N N 330 NAG O6 O N N 331 NAG O7 O N N 332 NAG H1 H N N 333 NAG H2 H N N 334 NAG H3 H N N 335 NAG H4 H N N 336 NAG H5 H N N 337 NAG H61 H N N 338 NAG H62 H N N 339 NAG H81 H N N 340 NAG H82 H N N 341 NAG H83 H N N 342 NAG HN2 H N N 343 NAG HO1 H N N 344 NAG HO3 H N N 345 NAG HO4 H N N 346 NAG HO6 H N N 347 NGA C1 C N R 348 NGA C2 C N R 349 NGA C3 C N R 350 NGA C4 C N R 351 NGA C5 C N R 352 NGA C6 C N N 353 NGA C7 C N N 354 NGA C8 C N N 355 NGA N2 N N N 356 NGA O1 O N N 357 NGA O3 O N N 358 NGA O4 O N N 359 NGA O5 O N N 360 NGA O6 O N N 361 NGA O7 O N N 362 NGA H1 H N N 363 NGA H2 H N N 364 NGA H3 H N N 365 NGA H4 H N N 366 NGA H5 H N N 367 NGA H61 H N N 368 NGA H62 H N N 369 NGA H81 H N N 370 NGA H82 H N N 371 NGA H83 H N N 372 NGA HN2 H N N 373 NGA HO1 H N N 374 NGA HO3 H N N 375 NGA HO4 H N N 376 NGA HO6 H N N 377 PHE N N N N 378 PHE CA C N S 379 PHE C C N N 380 PHE O O N N 381 PHE CB C N N 382 PHE CG C Y N 383 PHE CD1 C Y N 384 PHE CD2 C Y N 385 PHE CE1 C Y N 386 PHE CE2 C Y N 387 PHE CZ C Y N 388 PHE OXT O N N 389 PHE H H N N 390 PHE H2 H N N 391 PHE HA H N N 392 PHE HB2 H N N 393 PHE HB3 H N N 394 PHE HD1 H N N 395 PHE HD2 H N N 396 PHE HE1 H N N 397 PHE HE2 H N N 398 PHE HZ H N N 399 PHE HXT H N N 400 PRO N N N N 401 PRO CA C N S 402 PRO C C N N 403 PRO O O N N 404 PRO CB C N N 405 PRO CG C N N 406 PRO CD C N N 407 PRO OXT O N N 408 PRO H H N N 409 PRO HA H N N 410 PRO HB2 H N N 411 PRO HB3 H N N 412 PRO HG2 H N N 413 PRO HG3 H N N 414 PRO HD2 H N N 415 PRO HD3 H N N 416 PRO HXT H N N 417 SER N N N N 418 SER CA C N S 419 SER C C N N 420 SER O O N N 421 SER CB C N N 422 SER OG O N N 423 SER OXT O N N 424 SER H H N N 425 SER H2 H N N 426 SER HA H N N 427 SER HB2 H N N 428 SER HB3 H N N 429 SER HG H N N 430 SER HXT H N N 431 SIA C1 C N N 432 SIA C2 C N R 433 SIA C3 C N N 434 SIA C4 C N S 435 SIA C5 C N R 436 SIA C6 C N R 437 SIA C7 C N R 438 SIA C8 C N R 439 SIA C9 C N N 440 SIA C10 C N N 441 SIA C11 C N N 442 SIA N5 N N N 443 SIA O1A O N N 444 SIA O1B O N N 445 SIA O2 O N N 446 SIA O4 O N N 447 SIA O6 O N N 448 SIA O7 O N N 449 SIA O8 O N N 450 SIA O9 O N N 451 SIA O10 O N N 452 SIA H32 H N N 453 SIA H31 H N N 454 SIA H4 H N N 455 SIA H5 H N N 456 SIA H6 H N N 457 SIA H7 H N N 458 SIA H8 H N N 459 SIA H92 H N N 460 SIA H91 H N N 461 SIA H111 H N N 462 SIA H113 H N N 463 SIA H112 H N N 464 SIA HN5 H N N 465 SIA HO1B H N N 466 SIA HO2 H N N 467 SIA HO4 H N N 468 SIA HO7 H N N 469 SIA HO8 H N N 470 SIA HO9 H N N 471 THR N N N N 472 THR CA C N S 473 THR C C N N 474 THR O O N N 475 THR CB C N R 476 THR OG1 O N N 477 THR CG2 C N N 478 THR OXT O N N 479 THR H H N N 480 THR H2 H N N 481 THR HA H N N 482 THR HB H N N 483 THR HG1 H N N 484 THR HG21 H N N 485 THR HG22 H N N 486 THR HG23 H N N 487 THR HXT H N N 488 TRP N N N N 489 TRP CA C N S 490 TRP C C N N 491 TRP O O N N 492 TRP CB C N N 493 TRP CG C Y N 494 TRP CD1 C Y N 495 TRP CD2 C Y N 496 TRP NE1 N Y N 497 TRP CE2 C Y N 498 TRP CE3 C Y N 499 TRP CZ2 C Y N 500 TRP CZ3 C Y N 501 TRP CH2 C Y N 502 TRP OXT O N N 503 TRP H H N N 504 TRP H2 H N N 505 TRP HA H N N 506 TRP HB2 H N N 507 TRP HB3 H N N 508 TRP HD1 H N N 509 TRP HE1 H N N 510 TRP HE3 H N N 511 TRP HZ2 H N N 512 TRP HZ3 H N N 513 TRP HH2 H N N 514 TRP HXT H N N 515 TYR N N N N 516 TYR CA C N S 517 TYR C C N N 518 TYR O O N N 519 TYR CB C N N 520 TYR CG C Y N 521 TYR CD1 C Y N 522 TYR CD2 C Y N 523 TYR CE1 C Y N 524 TYR CE2 C Y N 525 TYR CZ C Y N 526 TYR OH O N N 527 TYR OXT O N N 528 TYR H H N N 529 TYR H2 H N N 530 TYR HA H N N 531 TYR HB2 H N N 532 TYR HB3 H N N 533 TYR HD1 H N N 534 TYR HD2 H N N 535 TYR HE1 H N N 536 TYR HE2 H N N 537 TYR HH H N N 538 TYR HXT H N N 539 VAL N N N N 540 VAL CA C N S 541 VAL C C N N 542 VAL O O N N 543 VAL CB C N N 544 VAL CG1 C N N 545 VAL CG2 C N N 546 VAL OXT O N N 547 VAL H H N N 548 VAL H2 H N N 549 VAL HA H N N 550 VAL HB H N N 551 VAL HG11 H N N 552 VAL HG12 H N N 553 VAL HG13 H N N 554 VAL HG21 H N N 555 VAL HG22 H N N 556 VAL HG23 H N N 557 VAL HXT H N N 558 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CEQ SI1 C2 sing N N 94 CEQ SI1 C3 sing N N 95 CEQ SI1 C4 sing N N 96 CEQ SI1 C5 sing N N 97 CEQ C2 H21 sing N N 98 CEQ C2 H22 sing N N 99 CEQ C2 H23 sing N N 100 CEQ C3 H31 sing N N 101 CEQ C3 H32 sing N N 102 CEQ C3 H33 sing N N 103 CEQ C4 H41 sing N N 104 CEQ C4 H42 sing N N 105 CEQ C4 H43 sing N N 106 CEQ C5 C6 sing N N 107 CEQ C5 H51 sing N N 108 CEQ C5 H52 sing N N 109 CEQ C6 H61 sing N N 110 CEQ C6 H62 sing N N 111 CEQ C6 H63 sing N N 112 CYS N CA sing N N 113 CYS N H sing N N 114 CYS N H2 sing N N 115 CYS CA C sing N N 116 CYS CA CB sing N N 117 CYS CA HA sing N N 118 CYS C O doub N N 119 CYS C OXT sing N N 120 CYS CB SG sing N N 121 CYS CB HB2 sing N N 122 CYS CB HB3 sing N N 123 CYS SG HG sing N N 124 CYS OXT HXT sing N N 125 GAL C1 C2 sing N N 126 GAL C1 O1 sing N N 127 GAL C1 O5 sing N N 128 GAL C1 H1 sing N N 129 GAL C2 C3 sing N N 130 GAL C2 O2 sing N N 131 GAL C2 H2 sing N N 132 GAL C3 C4 sing N N 133 GAL C3 O3 sing N N 134 GAL C3 H3 sing N N 135 GAL C4 C5 sing N N 136 GAL C4 O4 sing N N 137 GAL C4 H4 sing N N 138 GAL C5 C6 sing N N 139 GAL C5 O5 sing N N 140 GAL C5 H5 sing N N 141 GAL C6 O6 sing N N 142 GAL C6 H61 sing N N 143 GAL C6 H62 sing N N 144 GAL O1 HO1 sing N N 145 GAL O2 HO2 sing N N 146 GAL O3 HO3 sing N N 147 GAL O4 HO4 sing N N 148 GAL O6 HO6 sing N N 149 GLN N CA sing N N 150 GLN N H sing N N 151 GLN N H2 sing N N 152 GLN CA C sing N N 153 GLN CA CB sing N N 154 GLN CA HA sing N N 155 GLN C O doub N N 156 GLN C OXT sing N N 157 GLN CB CG sing N N 158 GLN CB HB2 sing N N 159 GLN CB HB3 sing N N 160 GLN CG CD sing N N 161 GLN CG HG2 sing N N 162 GLN CG HG3 sing N N 163 GLN CD OE1 doub N N 164 GLN CD NE2 sing N N 165 GLN NE2 HE21 sing N N 166 GLN NE2 HE22 sing N N 167 GLN OXT HXT sing N N 168 GLU N CA sing N N 169 GLU N H sing N N 170 GLU N H2 sing N N 171 GLU CA C sing N N 172 GLU CA CB sing N N 173 GLU CA HA sing N N 174 GLU C O doub N N 175 GLU C OXT sing N N 176 GLU CB CG sing N N 177 GLU CB HB2 sing N N 178 GLU CB HB3 sing N N 179 GLU CG CD sing N N 180 GLU CG HG2 sing N N 181 GLU CG HG3 sing N N 182 GLU CD OE1 doub N N 183 GLU CD OE2 sing N N 184 GLU OE2 HE2 sing N N 185 GLU OXT HXT sing N N 186 GLY N CA sing N N 187 GLY N H sing N N 188 GLY N H2 sing N N 189 GLY CA C sing N N 190 GLY CA HA2 sing N N 191 GLY CA HA3 sing N N 192 GLY C O doub N N 193 GLY C OXT sing N N 194 GLY OXT HXT sing N N 195 HIS N CA sing N N 196 HIS N H sing N N 197 HIS N H2 sing N N 198 HIS CA C sing N N 199 HIS CA CB sing N N 200 HIS CA HA sing N N 201 HIS C O doub N N 202 HIS C OXT sing N N 203 HIS CB CG sing N N 204 HIS CB HB2 sing N N 205 HIS CB HB3 sing N N 206 HIS CG ND1 sing Y N 207 HIS CG CD2 doub Y N 208 HIS ND1 CE1 doub Y N 209 HIS ND1 HD1 sing N N 210 HIS CD2 NE2 sing Y N 211 HIS CD2 HD2 sing N N 212 HIS CE1 NE2 sing Y N 213 HIS CE1 HE1 sing N N 214 HIS NE2 HE2 sing N N 215 HIS OXT HXT sing N N 216 HOH O H1 sing N N 217 HOH O H2 sing N N 218 ILE N CA sing N N 219 ILE N H sing N N 220 ILE N H2 sing N N 221 ILE CA C sing N N 222 ILE CA CB sing N N 223 ILE CA HA sing N N 224 ILE C O doub N N 225 ILE C OXT sing N N 226 ILE CB CG1 sing N N 227 ILE CB CG2 sing N N 228 ILE CB HB sing N N 229 ILE CG1 CD1 sing N N 230 ILE CG1 HG12 sing N N 231 ILE CG1 HG13 sing N N 232 ILE CG2 HG21 sing N N 233 ILE CG2 HG22 sing N N 234 ILE CG2 HG23 sing N N 235 ILE CD1 HD11 sing N N 236 ILE CD1 HD12 sing N N 237 ILE CD1 HD13 sing N N 238 ILE OXT HXT sing N N 239 LEU N CA sing N N 240 LEU N H sing N N 241 LEU N H2 sing N N 242 LEU CA C sing N N 243 LEU CA CB sing N N 244 LEU CA HA sing N N 245 LEU C O doub N N 246 LEU C OXT sing N N 247 LEU CB CG sing N N 248 LEU CB HB2 sing N N 249 LEU CB HB3 sing N N 250 LEU CG CD1 sing N N 251 LEU CG CD2 sing N N 252 LEU CG HG sing N N 253 LEU CD1 HD11 sing N N 254 LEU CD1 HD12 sing N N 255 LEU CD1 HD13 sing N N 256 LEU CD2 HD21 sing N N 257 LEU CD2 HD22 sing N N 258 LEU CD2 HD23 sing N N 259 LEU OXT HXT sing N N 260 LYS N CA sing N N 261 LYS N H sing N N 262 LYS N H2 sing N N 263 LYS CA C sing N N 264 LYS CA CB sing N N 265 LYS CA HA sing N N 266 LYS C O doub N N 267 LYS C OXT sing N N 268 LYS CB CG sing N N 269 LYS CB HB2 sing N N 270 LYS CB HB3 sing N N 271 LYS CG CD sing N N 272 LYS CG HG2 sing N N 273 LYS CG HG3 sing N N 274 LYS CD CE sing N N 275 LYS CD HD2 sing N N 276 LYS CD HD3 sing N N 277 LYS CE NZ sing N N 278 LYS CE HE2 sing N N 279 LYS CE HE3 sing N N 280 LYS NZ HZ1 sing N N 281 LYS NZ HZ2 sing N N 282 LYS NZ HZ3 sing N N 283 LYS OXT HXT sing N N 284 MET N CA sing N N 285 MET N H sing N N 286 MET N H2 sing N N 287 MET CA C sing N N 288 MET CA CB sing N N 289 MET CA HA sing N N 290 MET C O doub N N 291 MET C OXT sing N N 292 MET CB CG sing N N 293 MET CB HB2 sing N N 294 MET CB HB3 sing N N 295 MET CG SD sing N N 296 MET CG HG2 sing N N 297 MET CG HG3 sing N N 298 MET SD CE sing N N 299 MET CE HE1 sing N N 300 MET CE HE2 sing N N 301 MET CE HE3 sing N N 302 MET OXT HXT sing N N 303 NAG C1 C2 sing N N 304 NAG C1 O1 sing N N 305 NAG C1 O5 sing N N 306 NAG C1 H1 sing N N 307 NAG C2 C3 sing N N 308 NAG C2 N2 sing N N 309 NAG C2 H2 sing N N 310 NAG C3 C4 sing N N 311 NAG C3 O3 sing N N 312 NAG C3 H3 sing N N 313 NAG C4 C5 sing N N 314 NAG C4 O4 sing N N 315 NAG C4 H4 sing N N 316 NAG C5 C6 sing N N 317 NAG C5 O5 sing N N 318 NAG C5 H5 sing N N 319 NAG C6 O6 sing N N 320 NAG C6 H61 sing N N 321 NAG C6 H62 sing N N 322 NAG C7 C8 sing N N 323 NAG C7 N2 sing N N 324 NAG C7 O7 doub N N 325 NAG C8 H81 sing N N 326 NAG C8 H82 sing N N 327 NAG C8 H83 sing N N 328 NAG N2 HN2 sing N N 329 NAG O1 HO1 sing N N 330 NAG O3 HO3 sing N N 331 NAG O4 HO4 sing N N 332 NAG O6 HO6 sing N N 333 NGA C1 C2 sing N N 334 NGA C1 O1 sing N N 335 NGA C1 O5 sing N N 336 NGA C1 H1 sing N N 337 NGA C2 C3 sing N N 338 NGA C2 N2 sing N N 339 NGA C2 H2 sing N N 340 NGA C3 C4 sing N N 341 NGA C3 O3 sing N N 342 NGA C3 H3 sing N N 343 NGA C4 C5 sing N N 344 NGA C4 O4 sing N N 345 NGA C4 H4 sing N N 346 NGA C5 C6 sing N N 347 NGA C5 O5 sing N N 348 NGA C5 H5 sing N N 349 NGA C6 O6 sing N N 350 NGA C6 H61 sing N N 351 NGA C6 H62 sing N N 352 NGA C7 C8 sing N N 353 NGA C7 N2 sing N N 354 NGA C7 O7 doub N N 355 NGA C8 H81 sing N N 356 NGA C8 H82 sing N N 357 NGA C8 H83 sing N N 358 NGA N2 HN2 sing N N 359 NGA O1 HO1 sing N N 360 NGA O3 HO3 sing N N 361 NGA O4 HO4 sing N N 362 NGA O6 HO6 sing N N 363 PHE N CA sing N N 364 PHE N H sing N N 365 PHE N H2 sing N N 366 PHE CA C sing N N 367 PHE CA CB sing N N 368 PHE CA HA sing N N 369 PHE C O doub N N 370 PHE C OXT sing N N 371 PHE CB CG sing N N 372 PHE CB HB2 sing N N 373 PHE CB HB3 sing N N 374 PHE CG CD1 doub Y N 375 PHE CG CD2 sing Y N 376 PHE CD1 CE1 sing Y N 377 PHE CD1 HD1 sing N N 378 PHE CD2 CE2 doub Y N 379 PHE CD2 HD2 sing N N 380 PHE CE1 CZ doub Y N 381 PHE CE1 HE1 sing N N 382 PHE CE2 CZ sing Y N 383 PHE CE2 HE2 sing N N 384 PHE CZ HZ sing N N 385 PHE OXT HXT sing N N 386 PRO N CA sing N N 387 PRO N CD sing N N 388 PRO N H sing N N 389 PRO CA C sing N N 390 PRO CA CB sing N N 391 PRO CA HA sing N N 392 PRO C O doub N N 393 PRO C OXT sing N N 394 PRO CB CG sing N N 395 PRO CB HB2 sing N N 396 PRO CB HB3 sing N N 397 PRO CG CD sing N N 398 PRO CG HG2 sing N N 399 PRO CG HG3 sing N N 400 PRO CD HD2 sing N N 401 PRO CD HD3 sing N N 402 PRO OXT HXT sing N N 403 SER N CA sing N N 404 SER N H sing N N 405 SER N H2 sing N N 406 SER CA C sing N N 407 SER CA CB sing N N 408 SER CA HA sing N N 409 SER C O doub N N 410 SER C OXT sing N N 411 SER CB OG sing N N 412 SER CB HB2 sing N N 413 SER CB HB3 sing N N 414 SER OG HG sing N N 415 SER OXT HXT sing N N 416 SIA C1 C2 sing N N 417 SIA C1 O1A doub N N 418 SIA C1 O1B sing N N 419 SIA C2 C3 sing N N 420 SIA C2 O2 sing N N 421 SIA C2 O6 sing N N 422 SIA C3 C4 sing N N 423 SIA C3 H32 sing N N 424 SIA C3 H31 sing N N 425 SIA C4 C5 sing N N 426 SIA C4 O4 sing N N 427 SIA C4 H4 sing N N 428 SIA C5 C6 sing N N 429 SIA C5 N5 sing N N 430 SIA C5 H5 sing N N 431 SIA C6 C7 sing N N 432 SIA C6 O6 sing N N 433 SIA C6 H6 sing N N 434 SIA C7 C8 sing N N 435 SIA C7 O7 sing N N 436 SIA C7 H7 sing N N 437 SIA C8 C9 sing N N 438 SIA C8 O8 sing N N 439 SIA C8 H8 sing N N 440 SIA C9 O9 sing N N 441 SIA C9 H92 sing N N 442 SIA C9 H91 sing N N 443 SIA C10 C11 sing N N 444 SIA C10 N5 sing N N 445 SIA C10 O10 doub N N 446 SIA C11 H111 sing N N 447 SIA C11 H113 sing N N 448 SIA C11 H112 sing N N 449 SIA N5 HN5 sing N N 450 SIA O1B HO1B sing N N 451 SIA O2 HO2 sing N N 452 SIA O4 HO4 sing N N 453 SIA O7 HO7 sing N N 454 SIA O8 HO8 sing N N 455 SIA O9 HO9 sing N N 456 THR N CA sing N N 457 THR N H sing N N 458 THR N H2 sing N N 459 THR CA C sing N N 460 THR CA CB sing N N 461 THR CA HA sing N N 462 THR C O doub N N 463 THR C OXT sing N N 464 THR CB OG1 sing N N 465 THR CB CG2 sing N N 466 THR CB HB sing N N 467 THR OG1 HG1 sing N N 468 THR CG2 HG21 sing N N 469 THR CG2 HG22 sing N N 470 THR CG2 HG23 sing N N 471 THR OXT HXT sing N N 472 TRP N CA sing N N 473 TRP N H sing N N 474 TRP N H2 sing N N 475 TRP CA C sing N N 476 TRP CA CB sing N N 477 TRP CA HA sing N N 478 TRP C O doub N N 479 TRP C OXT sing N N 480 TRP CB CG sing N N 481 TRP CB HB2 sing N N 482 TRP CB HB3 sing N N 483 TRP CG CD1 doub Y N 484 TRP CG CD2 sing Y N 485 TRP CD1 NE1 sing Y N 486 TRP CD1 HD1 sing N N 487 TRP CD2 CE2 doub Y N 488 TRP CD2 CE3 sing Y N 489 TRP NE1 CE2 sing Y N 490 TRP NE1 HE1 sing N N 491 TRP CE2 CZ2 sing Y N 492 TRP CE3 CZ3 doub Y N 493 TRP CE3 HE3 sing N N 494 TRP CZ2 CH2 doub Y N 495 TRP CZ2 HZ2 sing N N 496 TRP CZ3 CH2 sing Y N 497 TRP CZ3 HZ3 sing N N 498 TRP CH2 HH2 sing N N 499 TRP OXT HXT sing N N 500 TYR N CA sing N N 501 TYR N H sing N N 502 TYR N H2 sing N N 503 TYR CA C sing N N 504 TYR CA CB sing N N 505 TYR CA HA sing N N 506 TYR C O doub N N 507 TYR C OXT sing N N 508 TYR CB CG sing N N 509 TYR CB HB2 sing N N 510 TYR CB HB3 sing N N 511 TYR CG CD1 doub Y N 512 TYR CG CD2 sing Y N 513 TYR CD1 CE1 sing Y N 514 TYR CD1 HD1 sing N N 515 TYR CD2 CE2 doub Y N 516 TYR CD2 HD2 sing N N 517 TYR CE1 CZ doub Y N 518 TYR CE1 HE1 sing N N 519 TYR CE2 CZ sing Y N 520 TYR CE2 HE2 sing N N 521 TYR CZ OH sing N N 522 TYR OH HH sing N N 523 TYR OXT HXT sing N N 524 VAL N CA sing N N 525 VAL N H sing N N 526 VAL N H2 sing N N 527 VAL CA C sing N N 528 VAL CA CB sing N N 529 VAL CA HA sing N N 530 VAL C O doub N N 531 VAL C OXT sing N N 532 VAL CB CG1 sing N N 533 VAL CB CG2 sing N N 534 VAL CB HB sing N N 535 VAL CG1 HG11 sing N N 536 VAL CG1 HG12 sing N N 537 VAL CG1 HG13 sing N N 538 VAL CG2 HG21 sing N N 539 VAL CG2 HG22 sing N N 540 VAL CG2 HG23 sing N N 541 VAL OXT HXT sing N N 542 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 SIA 3 n 2 SIA 4 n 2 NGA 5 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O7V _pdbx_initial_refinement_model.details 'PDB ENTRY 1O7V' # _atom_sites.entry_id 2HRL _atom_sites.fract_transf_matrix[1][1] 0.021729 _atom_sites.fract_transf_matrix[1][2] 0.012545 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025091 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009392 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SI # loop_