data_2HSB # _entry.id 2HSB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HSB pdb_00002hsb 10.2210/pdb2hsb/pdb RCSB RCSB038704 ? ? WWPDB D_1000038704 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367071 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HSB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (NP_069135.1) from Archaeoglobus Fulgidus at 1.95 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2HSB _cell.length_a 60.665 _cell.length_b 60.665 _cell.length_c 80.412 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HSB _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical UPF0332 protein AF0298' 14812.375 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 5 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DELELRIRKAEKLVQDAKKEFE(MSE)GLYERCCSTAYYA(MSE)FHAAKA(MSE)LLGYGRDSKTHRGTIYLI WECREELGLSDDDCSKLSRAFDLREESDYGIYKEVSKDLAIKILKDAEIFVQKAKNAVNKNR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDELELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAKAMLLGYGRDSKTHRGTIYLIWECREELGLSDDDCSK LSRAFDLREESDYGIYKEVSKDLAIKILKDAEIFVQKAKNAVNKNR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367071 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 GLU n 1 5 LEU n 1 6 GLU n 1 7 LEU n 1 8 ARG n 1 9 ILE n 1 10 ARG n 1 11 LYS n 1 12 ALA n 1 13 GLU n 1 14 LYS n 1 15 LEU n 1 16 VAL n 1 17 GLN n 1 18 ASP n 1 19 ALA n 1 20 LYS n 1 21 LYS n 1 22 GLU n 1 23 PHE n 1 24 GLU n 1 25 MSE n 1 26 GLY n 1 27 LEU n 1 28 TYR n 1 29 GLU n 1 30 ARG n 1 31 CYS n 1 32 CYS n 1 33 SER n 1 34 THR n 1 35 ALA n 1 36 TYR n 1 37 TYR n 1 38 ALA n 1 39 MSE n 1 40 PHE n 1 41 HIS n 1 42 ALA n 1 43 ALA n 1 44 LYS n 1 45 ALA n 1 46 MSE n 1 47 LEU n 1 48 LEU n 1 49 GLY n 1 50 TYR n 1 51 GLY n 1 52 ARG n 1 53 ASP n 1 54 SER n 1 55 LYS n 1 56 THR n 1 57 HIS n 1 58 ARG n 1 59 GLY n 1 60 THR n 1 61 ILE n 1 62 TYR n 1 63 LEU n 1 64 ILE n 1 65 TRP n 1 66 GLU n 1 67 CYS n 1 68 ARG n 1 69 GLU n 1 70 GLU n 1 71 LEU n 1 72 GLY n 1 73 LEU n 1 74 SER n 1 75 ASP n 1 76 ASP n 1 77 ASP n 1 78 CYS n 1 79 SER n 1 80 LYS n 1 81 LEU n 1 82 SER n 1 83 ARG n 1 84 ALA n 1 85 PHE n 1 86 ASP n 1 87 LEU n 1 88 ARG n 1 89 GLU n 1 90 GLU n 1 91 SER n 1 92 ASP n 1 93 TYR n 1 94 GLY n 1 95 ILE n 1 96 TYR n 1 97 LYS n 1 98 GLU n 1 99 VAL n 1 100 SER n 1 101 LYS n 1 102 ASP n 1 103 LEU n 1 104 ALA n 1 105 ILE n 1 106 LYS n 1 107 ILE n 1 108 LEU n 1 109 LYS n 1 110 ASP n 1 111 ALA n 1 112 GLU n 1 113 ILE n 1 114 PHE n 1 115 VAL n 1 116 GLN n 1 117 LYS n 1 118 ALA n 1 119 LYS n 1 120 ASN n 1 121 ALA n 1 122 VAL n 1 123 ASN n 1 124 LYS n 1 125 ASN n 1 126 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene NP_069135.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2234 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y298_ARCFU _struct_ref.pdbx_db_accession O29944 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDELELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAKAMLLGYGRDSKTHRGTIYLIWECREELGLSDDDCSKL SRAFDLREESDYGIYKEVSKDLAIKILKDAEIFVQKAKNAVNKNR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HSB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O29944 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HSB GLY A 1 ? UNP O29944 ? ? 'expression tag' 0 1 1 2HSB MSE A 2 ? UNP O29944 MET 1 'modified residue' 1 2 1 2HSB MSE A 25 ? UNP O29944 MET 24 'modified residue' 24 3 1 2HSB MSE A 39 ? UNP O29944 MET 38 'modified residue' 38 4 1 2HSB MSE A 46 ? UNP O29944 MET 45 'modified residue' 45 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HSB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details '0.05M Li2SO4, 50.0% PEG-200, 0.1M TRIS, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K, pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2006-06-17 _diffrn_detector.details 'FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97936 1.0 3 0.97918 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91837,0.97936,0.97918 # _reflns.entry_id 2HSB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.336 _reflns.d_resolution_high 1.900 _reflns.number_obs 11515 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 14.3 _reflns.B_iso_Wilson_estimate 30.41 _reflns.pdbx_redundancy 7.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.925 _reflns_shell.pdbx_Rsym_value 0.925 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 7.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HSB _refine.ls_number_reflns_obs 11471 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.34 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.21 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 552 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 40.51 _refine.aniso_B[1][1] -0.08000 _refine.aniso_B[2][2] -0.08000 _refine.aniso_B[3][3] 0.16000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. SO4 AND PEG-200 (PG4) MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE MODELED. 4. OCCUPANCIES OF SO4 1 AND PG4 7 ARE REDUCED BECAUSE THEY LIE ON SPECIAL POSITIONS. 5. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 6.819 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1020 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1131 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 29.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1102 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 810 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.275 2.018 ? 1456 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.872 3.000 ? 1966 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.521 5.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.552 23.846 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.857 15.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.019 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 148 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1160 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 220 'X-RAY DIFFRACTION' ? r_nbd_refined 0.216 0.200 ? 240 'X-RAY DIFFRACTION' ? r_nbd_other 0.179 0.200 ? 752 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.181 0.200 ? 527 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 569 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.168 0.200 ? 45 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.245 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.248 0.200 ? 94 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.159 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.134 3.000 ? 685 'X-RAY DIFFRACTION' ? r_mcbond_other 0.450 3.000 ? 260 'X-RAY DIFFRACTION' ? r_mcangle_it 2.913 5.000 ? 1000 'X-RAY DIFFRACTION' ? r_scbond_it 5.166 8.000 ? 521 'X-RAY DIFFRACTION' ? r_scangle_it 6.644 11.000 ? 454 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 778 _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.353 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HSB _struct.title 'Crystal structure of a hepn domain containing protein (af_0298) from archaeoglobus fulgidus at 1.95 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Duf103 family, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2HSB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? MSE A 25 ? ASP A 2 MSE A 24 1 ? 23 HELX_P HELX_P2 2 LEU A 27 ? TYR A 50 ? LEU A 26 TYR A 49 1 ? 24 HELX_P HELX_P3 3 THR A 56 ? CYS A 67 ? THR A 55 CYS A 66 1 ? 12 HELX_P HELX_P4 4 CYS A 67 ? GLY A 72 ? CYS A 66 GLY A 71 1 ? 6 HELX_P HELX_P5 5 SER A 74 ? GLY A 94 ? SER A 73 GLY A 93 1 ? 21 HELX_P HELX_P6 6 SER A 100 ? VAL A 122 ? SER A 99 VAL A 121 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ASP 3 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A GLU 24 C ? ? ? 1_555 A MSE 25 N ? ? A GLU 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 25 C ? ? ? 1_555 A GLY 26 N ? ? A MSE 24 A GLY 25 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A ALA 38 C ? ? ? 1_555 A MSE 39 N ? ? A ALA 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale6 covale both ? A MSE 39 C ? ? ? 1_555 A PHE 40 N ? ? A MSE 38 A PHE 39 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale7 covale both ? A ALA 45 C ? ? ? 1_555 A MSE 46 N ? ? A ALA 44 A MSE 45 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A MSE 46 C ? ? ? 1_555 A LEU 47 N ? ? A MSE 45 A LEU 46 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 126 ? 9 'BINDING SITE FOR RESIDUE SO4 A 126' AC2 Software A SO4 127 ? 4 'BINDING SITE FOR RESIDUE SO4 A 127' AC3 Software A SO4 128 ? 5 'BINDING SITE FOR RESIDUE SO4 A 128' AC4 Software A PG4 129 ? 8 'BINDING SITE FOR RESIDUE PG4 A 129' AC5 Software A PG4 130 ? 6 'BINDING SITE FOR RESIDUE PG4 A 130' AC6 Software A PG4 131 ? 7 'BINDING SITE FOR RESIDUE PG4 A 131' AC7 Software A PG4 132 ? 14 'BINDING SITE FOR RESIDUE PG4 A 132' AC8 Software A PG4 133 ? 7 'BINDING SITE FOR RESIDUE PG4 A 133' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 TYR A 37 ? TYR A 36 . ? 1_555 ? 2 AC1 9 HIS A 57 ? HIS A 56 . ? 1_555 ? 3 AC1 9 HIS A 57 ? HIS A 56 . ? 7_556 ? 4 AC1 9 ARG A 88 ? ARG A 87 . ? 7_556 ? 5 AC1 9 ARG A 88 ? ARG A 87 . ? 1_555 ? 6 AC1 9 TYR A 93 ? TYR A 92 . ? 1_555 ? 7 AC1 9 TYR A 93 ? TYR A 92 . ? 7_556 ? 8 AC1 9 ARG A 126 ? ARG A 125 . ? 5_655 ? 9 AC1 9 ARG A 126 ? ARG A 125 . ? 4_565 ? 10 AC2 4 SER A 54 ? SER A 53 . ? 1_555 ? 11 AC2 4 LYS A 55 ? LYS A 54 . ? 1_555 ? 12 AC2 4 THR A 56 ? THR A 55 . ? 1_555 ? 13 AC2 4 GLY A 59 ? GLY A 58 . ? 1_555 ? 14 AC3 5 ARG A 10 ? ARG A 9 . ? 1_555 ? 15 AC3 5 GLU A 13 ? GLU A 12 . ? 1_555 ? 16 AC3 5 ARG A 58 ? ARG A 57 . ? 5_645 ? 17 AC3 5 GLY A 59 ? GLY A 58 . ? 5_645 ? 18 AC3 5 TYR A 62 ? TYR A 61 . ? 5_645 ? 19 AC4 8 GLY A 1 ? GLY A 0 . ? 1_555 ? 20 AC4 8 GLU A 6 ? GLU A 5 . ? 1_555 ? 21 AC4 8 TYR A 62 ? TYR A 61 . ? 5_645 ? 22 AC4 8 TRP A 65 ? TRP A 64 . ? 5_645 ? 23 AC4 8 SER A 82 ? SER A 81 . ? 5_645 ? 24 AC4 8 ASP A 86 ? ASP A 85 . ? 5_645 ? 25 AC4 8 LYS A 124 ? LYS A 123 . ? 1_555 ? 26 AC4 8 HOH J . ? HOH A 150 . ? 1_555 ? 27 AC5 6 GLU A 112 ? GLU A 111 . ? 1_555 ? 28 AC5 6 ILE A 113 ? ILE A 112 . ? 1_555 ? 29 AC5 6 GLN A 116 ? GLN A 115 . ? 8_665 ? 30 AC5 6 GLN A 116 ? GLN A 115 . ? 1_555 ? 31 AC5 6 ASN A 120 ? ASN A 119 . ? 8_665 ? 32 AC5 6 HOH J . ? HOH A 178 . ? 8_665 ? 33 AC6 7 GLU A 24 ? GLU A 23 . ? 8_665 ? 34 AC6 7 ASP A 76 ? ASP A 75 . ? 1_555 ? 35 AC6 7 LYS A 80 ? LYS A 79 . ? 1_555 ? 36 AC6 7 LEU A 108 ? LEU A 107 . ? 8_665 ? 37 AC6 7 LYS A 109 ? LYS A 108 . ? 8_665 ? 38 AC6 7 GLU A 112 ? GLU A 111 . ? 8_665 ? 39 AC6 7 HOH J . ? HOH A 173 . ? 8_665 ? 40 AC7 14 ARG A 83 ? ARG A 82 . ? 1_555 ? 41 AC7 14 ARG A 83 ? ARG A 82 . ? 8_665 ? 42 AC7 14 ASP A 102 ? ASP A 101 . ? 8_665 ? 43 AC7 14 ILE A 105 ? ILE A 104 . ? 8_665 ? 44 AC7 14 ILE A 105 ? ILE A 104 . ? 1_555 ? 45 AC7 14 LYS A 106 ? LYS A 105 . ? 1_555 ? 46 AC7 14 LYS A 106 ? LYS A 105 . ? 8_665 ? 47 AC7 14 LYS A 109 ? LYS A 108 . ? 1_555 ? 48 AC7 14 LYS A 109 ? LYS A 108 . ? 8_665 ? 49 AC7 14 PG4 I . ? PG4 A 133 . ? 1_555 ? 50 AC7 14 HOH J . ? HOH A 135 . ? 8_665 ? 51 AC7 14 HOH J . ? HOH A 135 . ? 1_555 ? 52 AC7 14 HOH J . ? HOH A 175 . ? 1_555 ? 53 AC7 14 HOH J . ? HOH A 175 . ? 8_665 ? 54 AC8 7 ASP A 76 ? ASP A 75 . ? 8_665 ? 55 AC8 7 SER A 79 ? SER A 78 . ? 8_665 ? 56 AC8 7 LYS A 80 ? LYS A 79 . ? 8_665 ? 57 AC8 7 ARG A 83 ? ARG A 82 . ? 8_665 ? 58 AC8 7 LYS A 109 ? LYS A 108 . ? 1_555 ? 59 AC8 7 ASP A 110 ? ASP A 109 . ? 8_665 ? 60 AC8 7 PG4 H . ? PG4 A 132 . ? 1_555 ? # _atom_sites.entry_id 2HSB _atom_sites.fract_transf_matrix[1][1] 0.016484 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012436 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 ARG 10 9 9 ARG ARG A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 MSE 25 24 24 MSE MSE A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 CYS 31 30 30 CYS CYS A . n A 1 32 CYS 32 31 31 CYS CYS A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 MSE 39 38 38 MSE MSE A . n A 1 40 PHE 40 39 39 PHE PHE A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 MSE 46 45 45 MSE MSE A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 ARG 52 51 51 ARG ARG A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 TRP 65 64 64 TRP TRP A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 CYS 67 66 66 CYS CYS A . n A 1 68 ARG 68 67 67 ARG ARG A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 CYS 78 77 77 CYS CYS A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 LYS 80 79 79 LYS LYS A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 PHE 85 84 84 PHE PHE A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 TYR 96 95 95 TYR TYR A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 SER 100 99 99 SER SER A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 ASN 120 119 119 ASN ASN A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 LYS 124 123 123 LYS LYS A . n A 1 125 ASN 125 124 124 ASN ASN A . n A 1 126 ARG 126 125 125 ARG ARG A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 126 1 SO4 SO4 A . C 2 SO4 1 127 2 SO4 SO4 A . D 2 SO4 1 128 3 SO4 SO4 A . E 3 PG4 1 129 4 PG4 PG4 A . F 3 PG4 1 130 5 PG4 PG4 A . G 3 PG4 1 131 6 PG4 PG4 A . H 3 PG4 1 132 7 PG4 PG4 A . I 3 PG4 1 133 8 PG4 PG4 A . J 4 HOH 1 134 9 HOH HOH A . J 4 HOH 2 135 10 HOH HOH A . J 4 HOH 3 136 11 HOH HOH A . J 4 HOH 4 137 12 HOH HOH A . J 4 HOH 5 138 13 HOH HOH A . J 4 HOH 6 139 14 HOH HOH A . J 4 HOH 7 140 15 HOH HOH A . J 4 HOH 8 141 16 HOH HOH A . J 4 HOH 9 142 17 HOH HOH A . J 4 HOH 10 143 18 HOH HOH A . J 4 HOH 11 144 19 HOH HOH A . J 4 HOH 12 145 20 HOH HOH A . J 4 HOH 13 146 21 HOH HOH A . J 4 HOH 14 147 22 HOH HOH A . J 4 HOH 15 148 23 HOH HOH A . J 4 HOH 16 149 24 HOH HOH A . J 4 HOH 17 150 25 HOH HOH A . J 4 HOH 18 151 26 HOH HOH A . J 4 HOH 19 152 27 HOH HOH A . J 4 HOH 20 153 28 HOH HOH A . J 4 HOH 21 154 29 HOH HOH A . J 4 HOH 22 155 30 HOH HOH A . J 4 HOH 23 156 31 HOH HOH A . J 4 HOH 24 157 32 HOH HOH A . J 4 HOH 25 158 33 HOH HOH A . J 4 HOH 26 159 34 HOH HOH A . J 4 HOH 27 160 35 HOH HOH A . J 4 HOH 28 161 36 HOH HOH A . J 4 HOH 29 162 37 HOH HOH A . J 4 HOH 30 163 38 HOH HOH A . J 4 HOH 31 164 39 HOH HOH A . J 4 HOH 32 165 40 HOH HOH A . J 4 HOH 33 166 41 HOH HOH A . J 4 HOH 34 167 42 HOH HOH A . J 4 HOH 35 168 43 HOH HOH A . J 4 HOH 36 169 44 HOH HOH A . J 4 HOH 37 170 45 HOH HOH A . J 4 HOH 38 171 46 HOH HOH A . J 4 HOH 39 172 47 HOH HOH A . J 4 HOH 40 173 48 HOH HOH A . J 4 HOH 41 174 49 HOH HOH A . J 4 HOH 42 175 50 HOH HOH A . J 4 HOH 43 176 51 HOH HOH A . J 4 HOH 44 177 52 HOH HOH A . J 4 HOH 45 178 53 HOH HOH A . J 4 HOH 46 179 54 HOH HOH A . J 4 HOH 47 180 55 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 24 ? MET SELENOMETHIONINE 3 A MSE 39 A MSE 38 ? MET SELENOMETHIONINE 4 A MSE 46 A MSE 45 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4060 ? 1 MORE -78 ? 1 'SSA (A^2)' 12380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 80.4120000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 126 ? B SO4 . 2 1 A HOH 176 ? J HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_special_symmetry 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 39.6330 _pdbx_refine_tls.origin_y 32.7350 _pdbx_refine_tls.origin_z 29.2610 _pdbx_refine_tls.T[1][1] -0.0942 _pdbx_refine_tls.T[2][2] -0.1271 _pdbx_refine_tls.T[3][3] -0.2359 _pdbx_refine_tls.T[1][2] 0.0028 _pdbx_refine_tls.T[1][3] 0.0267 _pdbx_refine_tls.T[2][3] -0.0123 _pdbx_refine_tls.L[1][1] 0.1272 _pdbx_refine_tls.L[2][2] 0.4426 _pdbx_refine_tls.L[3][3] 2.7724 _pdbx_refine_tls.L[1][2] -0.2320 _pdbx_refine_tls.L[1][3] -0.4838 _pdbx_refine_tls.L[2][3] 0.9055 _pdbx_refine_tls.S[1][1] 0.0557 _pdbx_refine_tls.S[1][2] -0.0296 _pdbx_refine_tls.S[1][3] -0.0486 _pdbx_refine_tls.S[2][1] -0.1992 _pdbx_refine_tls.S[2][2] 0.0230 _pdbx_refine_tls.S[2][3] -0.0219 _pdbx_refine_tls.S[3][1] -0.2199 _pdbx_refine_tls.S[3][2] 0.0791 _pdbx_refine_tls.S[3][3] -0.0787 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 125 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 126 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHARP . ? package 'de La Fortelle' sharp-develop@globalphasing.com phasing http://babinet.globalphasing.com/sharp/ ? ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 38 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 38 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.543 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.407 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 29 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 29 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 29 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.94 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.36 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 96 ? CE ? A LYS 97 CE 2 1 Y 1 A LYS 96 ? NZ ? A LYS 97 NZ 3 1 N 1 A PG4 130 ? O4 ? F PG4 1 O4 4 1 N 1 A PG4 130 ? C7 ? F PG4 1 C7 5 1 N 1 A PG4 130 ? C8 ? F PG4 1 C8 6 1 N 1 A PG4 130 ? O5 ? F PG4 1 O5 7 1 N 1 A PG4 131 ? C5 ? G PG4 1 C5 8 1 N 1 A PG4 131 ? C6 ? G PG4 1 C6 9 1 N 1 A PG4 131 ? O4 ? G PG4 1 O4 10 1 N 1 A PG4 131 ? C7 ? G PG4 1 C7 11 1 N 1 A PG4 131 ? C8 ? G PG4 1 C8 12 1 N 1 A PG4 131 ? O5 ? G PG4 1 O5 13 1 N 1 A PG4 133 ? C5 ? I PG4 1 C5 14 1 N 1 A PG4 133 ? C6 ? I PG4 1 C6 15 1 N 1 A PG4 133 ? O4 ? I PG4 1 O4 16 1 N 1 A PG4 133 ? C7 ? I PG4 1 C7 17 1 N 1 A PG4 133 ? C8 ? I PG4 1 C8 18 1 N 1 A PG4 133 ? O5 ? I PG4 1 O5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'TETRAETHYLENE GLYCOL' PG4 4 water HOH #