HEADER FMN-BINDING PROTEIN 25-JUL-06 2HTI TITLE CRYSTAL STRUCTURE OF A FLAVIN-NUCLEOTIDE-BINDING PROTEIN (BH_0577) TITLE 2 FROM BACILLUS HALODURANS AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH0577 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 GENE: 10173191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, FMN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2HTI 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2HTI 1 REMARK REVDAT 5 18-OCT-17 2HTI 1 REMARK REVDAT 4 13-JUL-11 2HTI 1 VERSN REVDAT 3 28-JUL-10 2HTI 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2HTI 1 VERSN REVDAT 1 01-AUG-06 2HTI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF BH0577 (10173191) FROM BACILLUS JRNL TITL 2 HALODURANS AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 7389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55000 REMARK 3 B22 (A**2) : 1.55000 REMARK 3 B33 (A**2) : -2.33000 REMARK 3 B12 (A**2) : 0.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.855 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1019 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 902 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1390 ; 1.547 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2077 ; 0.675 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 123 ; 8.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;32.433 ;23.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 152 ;14.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;12.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 159 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1082 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 194 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 170 ; 0.225 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 822 ; 0.217 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 490 ; 0.205 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 579 ; 0.093 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.207 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.155 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.183 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.152 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 624 ; 1.741 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 255 ; 0.237 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1001 ; 3.345 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 439 ; 4.713 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 389 ; 7.111 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2860 16.7740 60.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.4353 T22: 0.3274 REMARK 3 T33: 0.2315 T12: 0.0151 REMARK 3 T13: -0.0509 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 5.3429 L22: 8.4959 REMARK 3 L33: 4.5739 L12: 0.3298 REMARK 3 L13: -1.4509 L23: -0.6555 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.1517 S13: -0.1932 REMARK 3 S21: 0.7303 S22: 0.2013 S23: -0.0543 REMARK 3 S31: 0.0078 S32: 0.0955 S33: -0.1611 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5370 17.9470 64.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.5201 T22: 0.4162 REMARK 3 T33: 0.3047 T12: 0.0853 REMARK 3 T13: 0.0131 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 3.8338 L22: 8.8156 REMARK 3 L33: 2.5998 L12: 3.5438 REMARK 3 L13: -1.5916 L23: -1.4797 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.1030 S13: 0.2115 REMARK 3 S21: 0.9248 S22: 0.3698 S23: 0.7111 REMARK 3 S31: -0.2866 S32: -0.1413 S33: -0.3721 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6710 17.4500 62.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.3919 T22: 0.3576 REMARK 3 T33: 0.3214 T12: 0.0634 REMARK 3 T13: 0.0348 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.0391 L22: 16.7793 REMARK 3 L33: 7.7668 L12: 3.2531 REMARK 3 L13: -0.1660 L23: 1.5109 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.2123 S13: 0.1234 REMARK 3 S21: 0.5664 S22: 0.2398 S23: 0.2351 REMARK 3 S31: -0.4660 S32: 0.2625 S33: -0.3130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORP- REMARK 3 ORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS REMARK 3 IN THE MSE RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. A FLAVIN ADENINE DINUCLEOTIDE (FAD) MOLECULE WAS LOCATED IN THE REMARK 3 STRUCTURE. REMARK 3 4. RESIDUES 0-9, 80-92, 126-142, AND 166-184 WERE NOT MODELED DUE REMARK 3 POOR ELECTRON DENSITY. REMARK 3 5. EXTRA DENSITY WAS NOTED NEAR RESIDUE I109 BUT NOT MODELED. REMARK 3 6. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2HTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92522,0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.01500 REMARK 200 R SYM FOR SHELL (I) : 0.01507 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.0% PEG-3350, 0.15M NATHIOCYANATE, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.32700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.65400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.99050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.31750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.66350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.32700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.65400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.31750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.99050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.66350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A REMARK 300 BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 36.08500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 62.50105 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.31750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 ARG A 5 REMARK 465 TYR A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 80 REMARK 465 THR A 81 REMARK 465 ILE A 82 REMARK 465 VAL A 83 REMARK 465 SER A 84 REMARK 465 PRO A 85 REMARK 465 VAL A 86 REMARK 465 PRO A 87 REMARK 465 ALA A 88 REMARK 465 HIS A 89 REMARK 465 THR A 90 REMARK 465 ASP A 91 REMARK 465 THR A 92 REMARK 465 GLY A 126 REMARK 465 TYR A 127 REMARK 465 TYR A 128 REMARK 465 HIS A 129 REMARK 465 SER A 130 REMARK 465 PRO A 131 REMARK 465 LEU A 132 REMARK 465 ALA A 133 REMARK 465 ALA A 134 REMARK 465 SER A 135 REMARK 465 HIS A 136 REMARK 465 VAL A 137 REMARK 465 GLU A 138 REMARK 465 LYS A 139 REMARK 465 TYR A 140 REMARK 465 ARG A 141 REMARK 465 SER A 142 REMARK 465 ILE A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 LEU A 169 REMARK 465 LYS A 170 REMARK 465 PHE A 171 REMARK 465 TYR A 172 REMARK 465 PRO A 173 REMARK 465 GLY A 174 REMARK 465 ARG A 175 REMARK 465 ASN A 176 REMARK 465 VAL A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 LYS A 181 REMARK 465 ASP A 182 REMARK 465 SER A 183 REMARK 465 ARG A 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 LYS A 12 CB CG CD CE NZ REMARK 470 GLU A 14 CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 16 CD CE NZ REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 LYS A 23 CD CE NZ REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLN A 117 CD OE1 NE2 REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 ASP A 121 OD1 REMARK 470 ARG A 147 CD NE CZ NH1 NH2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 PRO A 165 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 146 C ARG A 147 N 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 145 N - CA - C ANGL. DEV. = 23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 45.39 -159.25 REMARK 500 ASN A 34 -148.24 57.99 REMARK 500 ASP A 35 39.07 -98.91 REMARK 500 ASN A 48 -141.74 46.76 REMARK 500 HIS A 49 54.02 -108.89 REMARK 500 GLU A 77 -166.91 -169.27 REMARK 500 ASP A 78 -79.88 -81.12 REMARK 500 LEU A 144 31.07 -87.72 REMARK 500 GLU A 164 -70.25 -63.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 144 GLY A 145 -130.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359054 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2HTI A 1 184 UNP Q9KFA8 Q9KFA8_BACHD 1 184 SEQADV 2HTI GLY A 0 UNP Q9KFA8 EXPRESSION TAG SEQADV 2HTI MSE A 1 UNP Q9KFA8 MET 1 MODIFIED RESIDUE SEQADV 2HTI MSE A 64 UNP Q9KFA8 MET 64 MODIFIED RESIDUE SEQADV 2HTI MSE A 95 UNP Q9KFA8 MET 95 MODIFIED RESIDUE SEQADV 2HTI MSE A 116 UNP Q9KFA8 MET 116 MODIFIED RESIDUE SEQADV 2HTI MSE A 119 UNP Q9KFA8 MET 119 MODIFIED RESIDUE SEQRES 1 A 185 GLY MSE ASN ALA ILE ARG TYR THR LYS ARG GLU CYS LYS SEQRES 2 A 185 ASP GLU LYS LYS ILE THR GLU PHE LEU ASN LYS ALA ARG SEQRES 3 A 185 THR GLY PHE LEU GLY LEU SER THR ASN ASP GLN PRO TYR SEQRES 4 A 185 VAL ILE PRO LEU ASN PHE VAL TRP HIS ASN HIS ALA ILE SEQRES 5 A 185 TYR PHE HIS GLY ALA SER GLU GLY ARG LYS ILE LYS MSE SEQRES 6 A 185 ILE GLU ALA ASN PRO GLU VAL CYS PHE THR ILE CYS GLU SEQRES 7 A 185 ASP LEU GLY THR ILE VAL SER PRO VAL PRO ALA HIS THR SEQRES 8 A 185 ASP THR ALA TYR MSE SER VAL ILE ILE PHE GLY THR ILE SEQRES 9 A 185 GLU PRO VAL SER ALA ILE GLU GLU GLY THR GLU ALA MSE SEQRES 10 A 185 GLN GLN MSE LEU ASP LYS TYR VAL PRO GLY TYR TYR HIS SEQRES 11 A 185 SER PRO LEU ALA ALA SER HIS VAL GLU LYS TYR ARG SER SEQRES 12 A 185 SER LEU GLY SER ARG THR ALA ILE TYR LYS ILE SER CYS SEQRES 13 A 185 ARG GLU ARG THR ALA LYS VAL ASN GLU PRO ILE GLU SER SEQRES 14 A 185 LEU LYS PHE TYR PRO GLY ARG ASN VAL SER VAL ASP LYS SEQRES 15 A 185 ASP SER ARG MODRES 2HTI MSE A 64 MET SELENOMETHIONINE MODRES 2HTI MSE A 95 MET SELENOMETHIONINE MODRES 2HTI MSE A 116 MET SELENOMETHIONINE MODRES 2HTI MSE A 119 MET SELENOMETHIONINE HET MSE A 64 8 HET MSE A 95 8 HET MSE A 116 8 HET MSE A 119 8 HET NA A 185 1 HET FAD A 200 53 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 HOH *20(H2 O) HELIX 1 1 ASP A 13 ALA A 24 1 12 HELIX 2 2 GLY A 59 ASN A 68 1 10 HELIX 3 3 ALA A 108 VAL A 124 1 17 SHEET 1 A 7 GLN A 36 LEU A 42 0 SHEET 2 A 7 GLY A 27 THR A 33 -1 N GLY A 27 O LEU A 42 SHEET 3 A 7 GLU A 70 GLU A 77 -1 O CYS A 72 N GLY A 30 SHEET 4 A 7 TYR A 94 PRO A 105 -1 O VAL A 97 N ILE A 75 SHEET 5 A 7 THR A 148 ASN A 163 -1 O GLU A 157 N PHE A 100 SHEET 6 A 7 ALA A 50 ALA A 56 -1 N PHE A 53 O TYR A 151 SHEET 7 A 7 VAL A 45 HIS A 47 -1 N HIS A 47 O ALA A 50 LINK C LYS A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ILE A 65 1555 1555 1.33 LINK C TYR A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N SER A 96 1555 1555 1.33 LINK C ALA A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N GLN A 117 1555 1555 1.33 LINK C GLN A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N LEU A 120 1555 1555 1.32 SITE 1 AC1 1 CYS A 76 SITE 1 AC2 21 TYR A 38 PRO A 41 LEU A 42 ASN A 43 SITE 2 AC2 21 HIS A 54 GLY A 55 GLU A 58 GLY A 59 SITE 3 AC2 21 ARG A 60 LYS A 61 CYS A 76 SER A 96 SITE 4 AC2 21 ILE A 98 PHE A 100 THR A 159 LYS A 161 SITE 5 AC2 21 ASN A 163 PRO A 165 HOH A 209 HOH A 213 SITE 6 AC2 21 HOH A 220 CRYST1 72.170 72.170 129.981 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013860 0.008000 0.000000 0.00000 SCALE2 0.000000 0.016000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007690 0.00000