data_2HUA # _entry.id 2HUA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HUA pdb_00002hua 10.2210/pdb2hua/pdb RCSB RCSB038769 ? ? WWPDB D_1000038769 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HUA _pdbx_database_status.recvd_initial_deposition_date 2006-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Locker, N.' 1 'Easton, L.E.' 2 'Lukavsky, P.J.' 3 # _citation.id primary _citation.title 'HCV and CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 26 _citation.page_first 795 _citation.page_last 805 _citation.year 2007 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17255934 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7601549 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Locker, N.' 1 ? primary 'Easton, L.E.' 2 ? primary 'Lukavsky, P.J.' 3 ? # _cell.entry_id 2HUA _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HUA _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'CSFV IRES Domain IIa' _entity.formula_weight 12918.777 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 70-84 and 111-127' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCCUCCAGCGACGGCCUUCGGGACUAGCAAACGGAGGCC _entity_poly.pdbx_seq_one_letter_code_can GGCCUCCAGCGACGGCCUUCGGGACUAGCAAACGGAGGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 U n 1 6 C n 1 7 C n 1 8 A n 1 9 G n 1 10 C n 1 11 G n 1 12 A n 1 13 C n 1 14 G n 1 15 G n 1 16 C n 1 17 C n 1 18 U n 1 19 U n 1 20 C n 1 21 G n 1 22 G n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 A n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 A n 1 33 C n 1 34 G n 1 35 G n 1 36 A n 1 37 G n 1 38 G n 1 39 C n 1 40 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Prepared by in vitro transcription using T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HUA _struct_ref.pdbx_db_accession 2HUA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HUA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 40 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HUA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 40 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 '3D HMQC TOCSY' 1 3 1 '3D HCP' 1 4 1 '2D HP-COSY' 3 5 1 '2D DQF-COSY' 3 6 1 '2D NOESY' 3 7 2 '2D HP-COSY' 3 8 2 '2D DQF-COSY' 3 9 2 '2D NOESY' 3 10 2 '2D S-NOESY' 2 11 3 '2D S-NOESY' 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 6.0 '50mM sodium chloride' . K 2 288 ambient 6.0 '50mM sodium chloride' . K 3 278 ambient 6.0 '50mM sodium chloride' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride, 100% D2O' '100% D2O' 2 '1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride, 96% H2O, 4% D2O' '96% H2O, 4% D2O' 3 '1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride, 100% D2O' '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 800 ? 2 DMX Bruker 600 ? # _pdbx_nmr_details.entry_id 2HUA _pdbx_nmr_details.text ;The structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings ; # _pdbx_nmr_ensemble.entry_id 2HUA _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'lowest restraint violation and total energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2HUA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR XPLOR-NIH 'Schwieters, Kuszewski, Tjandra, Clore' 1 processing XwinNMR 3.1 Bruker 2 'data analysis' Sparky 3 'Goddard, Kneller' 3 refinement PALES 1 'Zweckstetter, Bax' 4 # _exptl.entry_id 2HUA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2HUA _struct.title 'Solution Structure of CSFV IRES Domain IIa' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HUA _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA HAIRPIN, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 1 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 1 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 1 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 2 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 2 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 2 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 3 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 3 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 3 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 4 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 4 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 4 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 5 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 5 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 6 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 6 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 6 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 7 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 7 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 7 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 8 N3 ? ? ? 1_555 A C 33 N4 ? ? A A 8 A C 33 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 9 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 9 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 9 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 10 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 10 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 10 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A A 27 N7 ? ? A G 11 A A 27 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A G 11 N3 ? ? ? 1_555 A A 27 N6 ? ? A G 11 A A 27 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 26 O2 ? ? A A 12 A U 26 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N7 ? ? ? 1_555 A A 24 N6 ? ? A G 15 A A 24 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 17 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 17 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 17 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 18 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 18 A G 21 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2HUA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HUA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 A G 1 ? ? H41 A C 40 ? ? 1.58 2 2 H21 A G 1 ? ? H41 A C 40 ? ? 1.23 3 3 H21 A G 1 ? ? H41 A C 40 ? ? 1.23 4 4 H21 A G 1 ? ? H41 A C 40 ? ? 1.24 5 5 O6 A G 1 ? ? H41 A C 40 ? ? 1.58 6 7 H21 A G 1 ? ? H41 A C 40 ? ? 1.24 7 9 O6 A G 1 ? ? H41 A C 40 ? ? 1.58 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HUA 'double helix' 2HUA 'a-form double helix' 2HUA tetraloop 2HUA 'bulge loop' 2HUA 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 40 1_555 0.463 -0.202 0.221 1.612 -0.896 -10.569 1 A_G1:C40_A A 1 ? A 40 ? 19 1 1 A G 2 1_555 A C 39 1_555 0.322 -0.174 -0.196 -0.774 -5.160 1.228 2 A_G2:C39_A A 2 ? A 39 ? 19 1 1 A C 3 1_555 A G 38 1_555 -0.408 -0.193 -0.155 1.906 -2.589 -2.248 3 A_C3:G38_A A 3 ? A 38 ? 19 1 1 A C 4 1_555 A G 37 1_555 -0.347 -0.115 -0.098 3.032 3.695 4.153 4 A_C4:G37_A A 4 ? A 37 ? 19 1 1 A U 5 1_555 A A 36 1_555 0.676 -0.302 -0.236 -1.891 -4.516 0.755 5 A_U5:A36_A A 5 ? A 36 ? 20 1 1 A C 6 1_555 A G 35 1_555 -0.356 -0.196 -0.254 0.734 0.660 -1.479 6 A_C6:G35_A A 6 ? A 35 ? 19 1 1 A C 7 1_555 A G 34 1_555 -0.436 -0.172 -0.532 6.530 7.303 0.834 7 A_C7:G34_A A 7 ? A 34 ? 19 1 1 A A 8 1_555 A C 33 1_555 6.933 -4.477 0.240 -0.428 -13.005 20.472 8 A_A8:C33_A A 8 ? A 33 ? ? 5 1 A G 9 1_555 A C 29 1_555 0.447 -0.183 -0.111 -5.424 -1.716 -4.697 9 A_G9:C29_A A 9 ? A 29 ? 19 1 1 A C 10 1_555 A G 28 1_555 -0.366 -0.168 -0.210 -2.659 1.930 0.532 10 A_C10:G28_A A 10 ? A 28 ? 19 1 1 A G 11 1_555 A A 27 1_555 7.022 -3.007 -0.554 2.778 8.243 -4.168 11 A_G11:A27_A A 11 ? A 27 ? 11 9 1 A A 12 1_555 A U 26 1_555 -5.938 -2.542 2.355 28.990 2.126 28.837 12 A_A12:U26_A A 12 ? A 26 ? ? ? 1 A G 14 1_555 A C 25 1_555 0.328 -0.208 -0.186 3.329 -0.666 -0.776 13 A_G14:C25_A A 14 ? A 25 ? 19 1 1 A G 15 1_555 A A 24 1_555 3.118 -5.305 2.047 19.731 -9.994 67.579 14 A_G15:A24_A A 15 ? A 24 ? ? ? 1 A C 16 1_555 A G 23 1_555 -0.373 -0.186 -0.019 1.949 -5.972 -0.934 15 A_C16:G23_A A 16 ? A 23 ? 19 1 1 A C 17 1_555 A G 22 1_555 -0.345 -0.217 -0.160 8.702 2.215 -4.348 16 A_C17:G22_A A 17 ? A 22 ? 19 1 1 A U 18 1_555 A G 21 1_555 0.766 -6.402 0.271 -2.424 -21.240 -86.657 17 A_U18:G21_A A 18 ? A 21 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 40 1_555 A G 2 1_555 A C 39 1_555 0.096 -0.830 3.466 0.520 11.586 41.466 -2.313 -0.078 3.136 15.991 -0.717 42.988 1 AA_G1G2:C39C40_AA A 1 ? A 40 ? A 2 ? A 39 ? 1 A G 2 1_555 A C 39 1_555 A C 3 1_555 A G 38 1_555 0.200 -1.372 3.346 0.893 -0.426 32.958 -2.342 -0.196 3.367 -0.751 -1.574 32.973 2 AA_G2C3:G38C39_AA A 2 ? A 39 ? A 3 ? A 38 ? 1 A C 3 1_555 A G 38 1_555 A C 4 1_555 A G 37 1_555 1.130 -1.430 3.488 -1.124 -7.420 32.952 -1.128 -2.147 3.675 -12.873 1.950 33.773 3 AA_C3C4:G37G38_AA A 3 ? A 38 ? A 4 ? A 37 ? 1 A C 4 1_555 A G 37 1_555 A U 5 1_555 A A 36 1_555 -1.251 -1.663 3.342 1.637 -1.785 38.321 -2.301 2.112 3.358 -2.717 -2.491 38.394 4 AA_C4U5:A36G37_AA A 4 ? A 37 ? A 5 ? A 36 ? 1 A U 5 1_555 A A 36 1_555 A C 6 1_555 A G 35 1_555 0.158 -0.702 3.903 1.787 -11.234 32.169 1.006 0.081 3.925 -19.527 -3.105 34.071 5 AA_U5C6:G35A36_AA A 5 ? A 36 ? A 6 ? A 35 ? 1 A C 6 1_555 A G 35 1_555 A C 7 1_555 A G 34 1_555 -0.062 -1.106 3.599 -0.584 1.631 31.302 -2.382 -0.005 3.539 3.019 1.081 31.349 6 AA_C6C7:G34G35_AA A 6 ? A 35 ? A 7 ? A 34 ? 1 A C 7 1_555 A G 34 1_555 A A 8 1_555 A C 33 1_555 0.642 1.290 3.581 10.449 25.960 57.950 -0.142 -0.059 3.857 25.252 -10.164 63.821 7 AA_C7A8:C33G34_AA A 7 ? A 34 ? A 8 ? A 33 ? 1 A G 9 1_555 A C 29 1_555 A C 10 1_555 A G 28 1_555 0.844 -1.843 3.412 4.332 -9.986 35.667 -1.382 -0.669 3.845 -15.853 -6.877 37.239 8 AA_G9C10:G28C29_AA A 9 ? A 29 ? A 10 ? A 28 ? 1 A C 10 1_555 A G 28 1_555 A G 11 1_555 A A 27 1_555 -0.654 -0.458 3.410 7.157 3.408 54.171 -0.708 1.154 3.273 3.720 -7.812 54.705 9 AA_C10G11:A27G28_AA A 10 ? A 28 ? A 11 ? A 27 ? 1 A G 11 1_555 A A 27 1_555 A A 12 1_555 A U 26 1_555 2.989 -0.633 3.039 0.381 -10.068 -16.129 6.426 9.225 2.190 32.122 1.216 -18.999 10 AA_G11A12:U26A27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A A 12 1_555 A U 26 1_555 A G 14 1_555 A C 25 1_555 -1.616 0.592 4.085 4.975 32.828 60.997 -1.068 1.674 3.825 30.089 -4.559 68.676 11 AA_A12G14:C25U26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 A G 14 1_555 A C 25 1_555 A G 15 1_555 A A 24 1_555 0.492 -4.320 1.949 -161.822 -7.790 38.960 -2.144 -1.080 0.390 -4.182 86.878 163.047 12 AA_G14G15:A24C25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A G 15 1_555 A A 24 1_555 A C 16 1_555 A G 23 1_555 -3.841 -2.797 -2.734 148.602 -76.373 -29.306 1.165 -2.402 1.372 40.389 78.588 -167.501 13 AA_G15C16:G23A24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A C 16 1_555 A G 23 1_555 A C 17 1_555 A G 22 1_555 0.275 -1.216 3.187 -0.370 14.117 31.372 -4.051 -0.518 2.429 24.605 0.646 34.331 14 AA_C16C17:G22G23_AA A 16 ? A 23 ? A 17 ? A 22 ? 1 A C 17 1_555 A G 22 1_555 A U 18 1_555 A G 21 1_555 1.269 -1.129 2.973 8.565 8.886 113.070 -0.766 -0.671 2.971 5.317 -5.125 113.509 15 AA_C17U18:G21G22_AA A 17 ? A 22 ? A 18 ? A 21 ? #