data_2HUJ # _entry.id 2HUJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HUJ pdb_00002huj 10.2210/pdb2huj/pdb RCSB RCSB038777 ? ? WWPDB D_1000038777 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367190 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HUJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.' _citation.journal_abbrev Proteins _citation.journal_volume 71 _citation.page_first 1589 _citation.page_last 1596 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18324683 _citation.pdbx_database_id_DOI 10.1002/prot.22020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kozbial, P.' 1 ? primary 'Xu, Q.' 2 ? primary 'Chiu, H.J.' 3 ? primary 'McMullan, D.' 4 ? primary 'Krishna, S.S.' 5 ? primary 'Miller, M.D.' 6 ? primary 'Abdubek, P.' 7 ? primary 'Acosta, C.' 8 ? primary 'Astakhova, T.' 9 ? primary 'Axelrod, H.L.' 10 ? primary 'Carlton, D.' 11 ? primary 'Clayton, T.' 12 ? primary 'Deller, M.' 13 ? primary 'Duan, L.' 14 ? primary 'Elias, Y.' 15 ? primary 'Elsliger, M.A.' 16 ? primary 'Feuerhelm, J.' 17 ? primary 'Grzechnik, S.K.' 18 ? primary 'Hale, J.' 19 ? primary 'Han, G.W.' 20 ? primary 'Jaroszewski, L.' 21 ? primary 'Jin, K.K.' 22 ? primary 'Klock, H.E.' 23 ? primary 'Knuth, M.W.' 24 ? primary 'Koesema, E.' 25 ? primary 'Kumar, A.' 26 ? primary 'Marciano, D.' 27 ? primary 'Morse, A.T.' 28 ? primary 'Murphy, K.D.' 29 ? primary 'Nigoghossian, E.' 30 ? primary 'Okach, L.' 31 ? primary 'Oommachen, S.' 32 ? primary 'Reyes, R.' 33 ? primary 'Rife, C.L.' 34 ? primary 'Spraggon, G.' 35 ? primary 'Trout, C.V.' 36 ? primary 'van den Bedem, H.' 37 ? primary 'Weekes, D.' 38 ? primary 'White, A.' 39 ? primary 'Wolf, G.' 40 ? primary 'Zubieta, C.' 41 ? primary 'Hodgson, K.O.' 42 ? primary 'Wooley, J.' 43 ? primary 'Deacon, A.M.' 44 ? primary 'Godzik, A.' 45 ? primary 'Lesley, S.A.' 46 ? primary 'Wilson, I.A.' 47 ? # _cell.entry_id 2HUJ _cell.length_a 100.110 _cell.length_b 100.110 _cell.length_c 66.916 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HUJ _symmetry.Int_Tables_number 182 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lin2004 protein' 17219.670 1 ? ? ? ? 2 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)ELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKD(MSE)KPFVDEAKRCAD DFLELAIPWVNTERPPYLGELQLRQACDNVQ(MSE)TAVSAFNGRSFYKHFLDHYQSTKYTLTRVRDFLKRKEES(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMKPFVDEAKRCADDFLELAIPWVNT ERPPYLGELQLRQACDNVQMTAVSAFNGRSFYKHFLDHYQSTKYTLTRVRDFLKRKEESM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367190 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 GLU n 1 22 LEU n 1 23 LEU n 1 24 ILE n 1 25 ARG n 1 26 THR n 1 27 GLU n 1 28 GLN n 1 29 LEU n 1 30 LEU n 1 31 LEU n 1 32 GLN n 1 33 ASN n 1 34 GLU n 1 35 LYS n 1 36 ASN n 1 37 TRP n 1 38 GLU n 1 39 LEU n 1 40 TYR n 1 41 LEU n 1 42 SER n 1 43 ASN n 1 44 ARG n 1 45 GLU n 1 46 GLU n 1 47 GLU n 1 48 LYS n 1 49 PRO n 1 50 PHE n 1 51 ASP n 1 52 PHE n 1 53 TYR n 1 54 LYS n 1 55 ASP n 1 56 MSE n 1 57 LYS n 1 58 PRO n 1 59 PHE n 1 60 VAL n 1 61 ASP n 1 62 GLU n 1 63 ALA n 1 64 LYS n 1 65 ARG n 1 66 CYS n 1 67 ALA n 1 68 ASP n 1 69 ASP n 1 70 PHE n 1 71 LEU n 1 72 GLU n 1 73 LEU n 1 74 ALA n 1 75 ILE n 1 76 PRO n 1 77 TRP n 1 78 VAL n 1 79 ASN n 1 80 THR n 1 81 GLU n 1 82 ARG n 1 83 PRO n 1 84 PRO n 1 85 TYR n 1 86 LEU n 1 87 GLY n 1 88 GLU n 1 89 LEU n 1 90 GLN n 1 91 LEU n 1 92 ARG n 1 93 GLN n 1 94 ALA n 1 95 CYS n 1 96 ASP n 1 97 ASN n 1 98 VAL n 1 99 GLN n 1 100 MSE n 1 101 THR n 1 102 ALA n 1 103 VAL n 1 104 SER n 1 105 ALA n 1 106 PHE n 1 107 ASN n 1 108 GLY n 1 109 ARG n 1 110 SER n 1 111 PHE n 1 112 TYR n 1 113 LYS n 1 114 HIS n 1 115 PHE n 1 116 LEU n 1 117 ASP n 1 118 HIS n 1 119 TYR n 1 120 GLN n 1 121 SER n 1 122 THR n 1 123 LYS n 1 124 TYR n 1 125 THR n 1 126 LEU n 1 127 THR n 1 128 ARG n 1 129 VAL n 1 130 ARG n 1 131 ASP n 1 132 PHE n 1 133 LEU n 1 134 LYS n 1 135 ARG n 1 136 LYS n 1 137 GLU n 1 138 GLU n 1 139 SER n 1 140 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene NP_471338.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria innocua' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1642 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q92AB8_LISIN _struct_ref.pdbx_db_accession Q92AB8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HUJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92AB8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HUJ MSE A 1 ? UNP Q92AB8 ? ? 'expression tag' -18 1 1 2HUJ GLY A 2 ? UNP Q92AB8 ? ? 'expression tag' -17 2 1 2HUJ SER A 3 ? UNP Q92AB8 ? ? 'expression tag' -16 3 1 2HUJ ASP A 4 ? UNP Q92AB8 ? ? 'expression tag' -15 4 1 2HUJ LYS A 5 ? UNP Q92AB8 ? ? 'expression tag' -14 5 1 2HUJ ILE A 6 ? UNP Q92AB8 ? ? 'expression tag' -13 6 1 2HUJ HIS A 7 ? UNP Q92AB8 ? ? 'expression tag' -12 7 1 2HUJ HIS A 8 ? UNP Q92AB8 ? ? 'expression tag' -11 8 1 2HUJ HIS A 9 ? UNP Q92AB8 ? ? 'expression tag' -10 9 1 2HUJ HIS A 10 ? UNP Q92AB8 ? ? 'expression tag' -9 10 1 2HUJ HIS A 11 ? UNP Q92AB8 ? ? 'expression tag' -8 11 1 2HUJ HIS A 12 ? UNP Q92AB8 ? ? 'expression tag' -7 12 1 2HUJ GLU A 13 ? UNP Q92AB8 ? ? 'expression tag' -6 13 1 2HUJ ASN A 14 ? UNP Q92AB8 ? ? 'expression tag' -5 14 1 2HUJ LEU A 15 ? UNP Q92AB8 ? ? 'expression tag' -4 15 1 2HUJ TYR A 16 ? UNP Q92AB8 ? ? 'expression tag' -3 16 1 2HUJ PHE A 17 ? UNP Q92AB8 ? ? 'expression tag' -2 17 1 2HUJ GLN A 18 ? UNP Q92AB8 ? ? 'expression tag' -1 18 1 2HUJ GLY A 19 ? UNP Q92AB8 ? ? 'expression tag' 0 19 1 2HUJ MSE A 20 ? UNP Q92AB8 MET 1 'modified residue' 1 20 1 2HUJ MSE A 56 ? UNP Q92AB8 MET 37 'modified residue' 37 21 1 2HUJ MSE A 100 ? UNP Q92AB8 MET 81 'modified residue' 81 22 1 2HUJ MSE A 140 ? UNP Q92AB8 MET 121 'modified residue' 121 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HUJ # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.description _exptl_crystal.density_meas _exptl_crystal.F_000 _exptl_crystal.preparation 1 58.66 3.00 ? ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP, NANODROP' 4.6 277 '30.0% Glycerol, 5.6% PEG-4000, 0.1M Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' ? . 2 'VAPOR DIFFUSION, SITTING DROP, NANODROP' 4.5 277 '0.2M Ca(OAc)2, 30.0% PEG-400, 0.1M Acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' ? . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 2 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2006-07-17 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.000001 1.0 2 0.979291 1.0 3 0.918370 1.0 4 0.978981 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' 1.000001 ? SSRL 2 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' '0.979291, 0.918370, 0.978981' ? SSRL # _reflns.entry_id 2HUJ _reflns.d_resolution_high 1.740 _reflns.d_resolution_low 29.424 _reflns.number_obs 20444 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_netI_over_sigmaI 6.400 _reflns.pdbx_Rsym_value 0.076 _reflns.pdbx_redundancy 11.500 _reflns.percent_possible_obs 98.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.74 1.79 ? 9794 ? 0.852 0.9 0.852 ? 7.10 ? 1376 96.80 1 1 1.79 1.83 ? 10302 ? 0.599 1.3 0.599 ? 7.10 ? 1450 98.10 2 1 1.83 1.89 ? 9904 ? 0.462 1.6 0.462 ? 7.10 ? 1398 97.70 3 1 1.89 1.95 ? 9713 ? 0.371 2.0 0.371 ? 7.10 ? 1361 98.50 4 1 1.95 2.01 ? 14603 ? 0.413 1.7 0.413 ? 10.90 ? 1334 98.30 5 1 2.01 2.08 ? 15712 ? 0.315 2.2 0.315 ? 12.20 ? 1288 99.30 6 1 2.08 2.16 ? 17565 ? 0.228 3.2 0.228 ? 14.00 ? 1252 99.00 7 1 2.16 2.25 ? 16888 ? 0.188 3.8 0.188 ? 14.00 ? 1209 99.20 8 1 2.25 2.35 ? 16107 ? 0.147 4.8 0.147 ? 13.80 ? 1165 99.60 9 1 2.35 2.46 ? 15812 ? 0.111 6.3 0.111 ? 14.00 ? 1133 99.60 10 1 2.46 2.59 ? 14447 ? 0.097 7.2 0.097 ? 13.70 ? 1053 99.90 11 1 2.59 2.75 ? 14103 ? 0.084 8.2 0.084 ? 13.70 ? 1028 99.90 12 1 2.75 2.94 ? 13173 ? 0.072 9.2 0.072 ? 13.60 ? 970 99.90 13 1 2.94 3.18 ? 12121 ? 0.063 9.7 0.063 ? 13.60 ? 889 99.80 14 1 3.18 3.48 ? 11000 ? 0.053 11.4 0.053 ? 13.30 ? 825 99.40 15 1 3.48 3.89 ? 9941 ? 0.049 12.0 0.049 ? 13.10 ? 760 99.10 16 1 3.89 4.49 ? 8358 ? 0.052 11.9 0.052 ? 12.40 ? 674 98.80 17 1 4.49 5.50 ? 7313 ? 0.055 10.7 0.055 ? 12.80 ? 571 98.10 18 1 5.50 7.78 ? 5832 ? 0.053 11.0 0.053 ? 13.00 ? 450 97.10 19 1 7.78 29.45 ? 2601 ? 0.042 12.7 0.042 ? 10.10 ? 258 91.60 20 1 # _refine.entry_id 2HUJ _refine.ls_d_res_high 1.740 _refine.ls_d_res_low 29.424 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.430 _refine.ls_number_reflns_obs 20422 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.(3) THERE ARE SOME SMALL BLOBS OF UNEXPLAINED ELECTRON DENSITY NEAR RESIDUES A25, A46, A93 AND A96. THEY COULD BE DISORDERED SOLVENT MOLECULES FROM CRYSTALLIZATION SOLUTION. (4) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.173 _refine.ls_R_factor_R_free 0.207 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 1072 _refine.B_iso_mean 28.343 _refine.aniso_B[1][1] 1.020 _refine.aniso_B[2][2] 1.020 _refine.aniso_B[3][3] -1.530 _refine.aniso_B[1][2] 0.510 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.pdbx_overall_ESU_R 0.086 _refine.pdbx_overall_ESU_R_Free 0.090 _refine.overall_SU_ML 0.059 _refine.overall_SU_B 3.666 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.175 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1044 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1141 _refine_hist.d_res_high 1.740 _refine_hist.d_res_low 29.424 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1082 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 954 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1460 1.211 1.956 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2219 0.797 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 124 4.054 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 60 32.756 24.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 195 12.542 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 10.064 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 152 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1192 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 238 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 225 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 837 0.160 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 543 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 577 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 60 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 5 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 27 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 654 2.111 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 250 0.494 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1014 2.738 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 501 4.825 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 446 6.869 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.734 _refine_ls_shell.d_res_low 1.779 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 84.760 _refine_ls_shell.number_reflns_R_work 1152 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.R_factor_R_free 0.37 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1224 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HUJ _struct.title 'Crystal structure of a protein of uknown function (NP_471338.1) from Listeria innocua at 1.74 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_471338.1, hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 2HUJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 15 ? GLU A 46 ? LEU A -4 GLU A 27 1 ? 32 HELX_P HELX_P2 2 ASP A 55 ? ARG A 82 ? ASP A 36 ARG A 63 1 ? 28 HELX_P HELX_P3 3 GLY A 87 ? ALA A 105 ? GLY A 68 ALA A 86 1 ? 19 HELX_P HELX_P4 4 PHE A 111 ? GLU A 138 ? PHE A 92 GLU A 119 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A GLU 21 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A ASP 55 C ? ? ? 1_555 A MSE 56 N ? ? A ASP 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 56 C ? ? ? 1_555 A LYS 57 N ? ? A MSE 37 A LYS 38 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A GLN 99 C ? ? ? 1_555 A MSE 100 N ? ? A GLN 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A MSE 100 C ? ? ? 1_555 A THR 101 N ? ? A MSE 81 A THR 82 1_555 ? ? ? ? ? ? ? 1.320 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2HUJ _atom_sites.fract_transf_matrix[1][1] 0.00999 _atom_sites.fract_transf_matrix[1][2] 0.00577 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01153 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01494 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 GLU 21 2 2 GLU GLU A . n A 1 22 LEU 22 3 3 LEU LEU A . n A 1 23 LEU 23 4 4 LEU LEU A . n A 1 24 ILE 24 5 5 ILE ILE A . n A 1 25 ARG 25 6 6 ARG ARG A . n A 1 26 THR 26 7 7 THR THR A . n A 1 27 GLU 27 8 8 GLU GLU A . n A 1 28 GLN 28 9 9 GLN GLN A . n A 1 29 LEU 29 10 10 LEU LEU A . n A 1 30 LEU 30 11 11 LEU LEU A . n A 1 31 LEU 31 12 12 LEU LEU A . n A 1 32 GLN 32 13 13 GLN GLN A . n A 1 33 ASN 33 14 14 ASN ASN A . n A 1 34 GLU 34 15 15 GLU GLU A . n A 1 35 LYS 35 16 16 LYS LYS A . n A 1 36 ASN 36 17 17 ASN ASN A . n A 1 37 TRP 37 18 18 TRP TRP A . n A 1 38 GLU 38 19 19 GLU GLU A . n A 1 39 LEU 39 20 20 LEU LEU A . n A 1 40 TYR 40 21 21 TYR TYR A . n A 1 41 LEU 41 22 22 LEU LEU A . n A 1 42 SER 42 23 23 SER SER A . n A 1 43 ASN 43 24 24 ASN ASN A . n A 1 44 ARG 44 25 25 ARG ARG A . n A 1 45 GLU 45 26 26 GLU GLU A . n A 1 46 GLU 46 27 27 GLU GLU A . n A 1 47 GLU 47 28 28 GLU GLU A . n A 1 48 LYS 48 29 29 LYS LYS A . n A 1 49 PRO 49 30 30 PRO PRO A . n A 1 50 PHE 50 31 31 PHE PHE A . n A 1 51 ASP 51 32 32 ASP ASP A . n A 1 52 PHE 52 33 33 PHE PHE A . n A 1 53 TYR 53 34 34 TYR TYR A . n A 1 54 LYS 54 35 35 LYS LYS A . n A 1 55 ASP 55 36 36 ASP ASP A . n A 1 56 MSE 56 37 37 MSE MSE A . n A 1 57 LYS 57 38 38 LYS LYS A . n A 1 58 PRO 58 39 39 PRO PRO A . n A 1 59 PHE 59 40 40 PHE PHE A . n A 1 60 VAL 60 41 41 VAL VAL A . n A 1 61 ASP 61 42 42 ASP ASP A . n A 1 62 GLU 62 43 43 GLU GLU A . n A 1 63 ALA 63 44 44 ALA ALA A . n A 1 64 LYS 64 45 45 LYS LYS A . n A 1 65 ARG 65 46 46 ARG ARG A . n A 1 66 CYS 66 47 47 CYS CYS A . n A 1 67 ALA 67 48 48 ALA ALA A . n A 1 68 ASP 68 49 49 ASP ASP A . n A 1 69 ASP 69 50 50 ASP ASP A . n A 1 70 PHE 70 51 51 PHE PHE A . n A 1 71 LEU 71 52 52 LEU LEU A . n A 1 72 GLU 72 53 53 GLU GLU A . n A 1 73 LEU 73 54 54 LEU LEU A . n A 1 74 ALA 74 55 55 ALA ALA A . n A 1 75 ILE 75 56 56 ILE ILE A . n A 1 76 PRO 76 57 57 PRO PRO A . n A 1 77 TRP 77 58 58 TRP TRP A . n A 1 78 VAL 78 59 59 VAL VAL A . n A 1 79 ASN 79 60 60 ASN ASN A . n A 1 80 THR 80 61 61 THR THR A . n A 1 81 GLU 81 62 62 GLU GLU A . n A 1 82 ARG 82 63 63 ARG ARG A . n A 1 83 PRO 83 64 64 PRO PRO A . n A 1 84 PRO 84 65 65 PRO PRO A . n A 1 85 TYR 85 66 66 TYR TYR A . n A 1 86 LEU 86 67 67 LEU LEU A . n A 1 87 GLY 87 68 68 GLY GLY A . n A 1 88 GLU 88 69 69 GLU GLU A . n A 1 89 LEU 89 70 70 LEU LEU A . n A 1 90 GLN 90 71 71 GLN GLN A . n A 1 91 LEU 91 72 72 LEU LEU A . n A 1 92 ARG 92 73 73 ARG ARG A . n A 1 93 GLN 93 74 74 GLN GLN A . n A 1 94 ALA 94 75 75 ALA ALA A . n A 1 95 CYS 95 76 76 CYS CYS A . n A 1 96 ASP 96 77 77 ASP ASP A . n A 1 97 ASN 97 78 78 ASN ASN A . n A 1 98 VAL 98 79 79 VAL VAL A . n A 1 99 GLN 99 80 80 GLN GLN A . n A 1 100 MSE 100 81 81 MSE MSE A . n A 1 101 THR 101 82 82 THR THR A . n A 1 102 ALA 102 83 83 ALA ALA A . n A 1 103 VAL 103 84 84 VAL VAL A . n A 1 104 SER 104 85 85 SER SER A . n A 1 105 ALA 105 86 86 ALA ALA A . n A 1 106 PHE 106 87 87 PHE PHE A . n A 1 107 ASN 107 88 88 ASN ASN A . n A 1 108 GLY 108 89 89 GLY GLY A . n A 1 109 ARG 109 90 90 ARG ARG A . n A 1 110 SER 110 91 91 SER SER A . n A 1 111 PHE 111 92 92 PHE PHE A . n A 1 112 TYR 112 93 93 TYR TYR A . n A 1 113 LYS 113 94 94 LYS LYS A . n A 1 114 HIS 114 95 95 HIS HIS A . n A 1 115 PHE 115 96 96 PHE PHE A . n A 1 116 LEU 116 97 97 LEU LEU A . n A 1 117 ASP 117 98 98 ASP ASP A . n A 1 118 HIS 118 99 99 HIS HIS A . n A 1 119 TYR 119 100 100 TYR TYR A . n A 1 120 GLN 120 101 101 GLN GLN A . n A 1 121 SER 121 102 102 SER SER A . n A 1 122 THR 122 103 103 THR THR A . n A 1 123 LYS 123 104 104 LYS LYS A . n A 1 124 TYR 124 105 105 TYR TYR A . n A 1 125 THR 125 106 106 THR THR A . n A 1 126 LEU 126 107 107 LEU LEU A . n A 1 127 THR 127 108 108 THR THR A . n A 1 128 ARG 128 109 109 ARG ARG A . n A 1 129 VAL 129 110 110 VAL VAL A . n A 1 130 ARG 130 111 111 ARG ARG A . n A 1 131 ASP 131 112 112 ASP ASP A . n A 1 132 PHE 132 113 113 PHE PHE A . n A 1 133 LEU 133 114 114 LEU LEU A . n A 1 134 LYS 134 115 115 LYS LYS A . n A 1 135 ARG 135 116 116 ARG ARG A . n A 1 136 LYS 136 117 117 LYS LYS A . n A 1 137 GLU 137 118 118 GLU GLU A . n A 1 138 GLU 138 119 119 GLU GLU A . n A 1 139 SER 139 120 120 SER SER A . n A 1 140 MSE 140 121 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 122 1 HOH HOH A . B 2 HOH 2 123 2 HOH HOH A . B 2 HOH 3 124 3 HOH HOH A . B 2 HOH 4 125 4 HOH HOH A . B 2 HOH 5 126 5 HOH HOH A . B 2 HOH 6 127 6 HOH HOH A . B 2 HOH 7 128 7 HOH HOH A . B 2 HOH 8 129 8 HOH HOH A . B 2 HOH 9 130 9 HOH HOH A . B 2 HOH 10 131 10 HOH HOH A . B 2 HOH 11 132 11 HOH HOH A . B 2 HOH 12 133 12 HOH HOH A . B 2 HOH 13 134 13 HOH HOH A . B 2 HOH 14 135 14 HOH HOH A . B 2 HOH 15 136 15 HOH HOH A . B 2 HOH 16 137 16 HOH HOH A . B 2 HOH 17 138 17 HOH HOH A . B 2 HOH 18 139 18 HOH HOH A . B 2 HOH 19 140 19 HOH HOH A . B 2 HOH 20 141 20 HOH HOH A . B 2 HOH 21 142 21 HOH HOH A . B 2 HOH 22 143 22 HOH HOH A . B 2 HOH 23 144 23 HOH HOH A . B 2 HOH 24 145 24 HOH HOH A . B 2 HOH 25 146 25 HOH HOH A . B 2 HOH 26 147 26 HOH HOH A . B 2 HOH 27 148 27 HOH HOH A . B 2 HOH 28 149 28 HOH HOH A . B 2 HOH 29 150 29 HOH HOH A . B 2 HOH 30 151 30 HOH HOH A . B 2 HOH 31 152 31 HOH HOH A . B 2 HOH 32 153 32 HOH HOH A . B 2 HOH 33 154 33 HOH HOH A . B 2 HOH 34 155 34 HOH HOH A . B 2 HOH 35 156 35 HOH HOH A . B 2 HOH 36 157 36 HOH HOH A . B 2 HOH 37 158 37 HOH HOH A . B 2 HOH 38 159 38 HOH HOH A . B 2 HOH 39 160 39 HOH HOH A . B 2 HOH 40 161 40 HOH HOH A . B 2 HOH 41 162 41 HOH HOH A . B 2 HOH 42 163 42 HOH HOH A . B 2 HOH 43 164 43 HOH HOH A . B 2 HOH 44 165 44 HOH HOH A . B 2 HOH 45 166 45 HOH HOH A . B 2 HOH 46 167 46 HOH HOH A . B 2 HOH 47 168 47 HOH HOH A . B 2 HOH 48 169 48 HOH HOH A . B 2 HOH 49 170 49 HOH HOH A . B 2 HOH 50 171 50 HOH HOH A . B 2 HOH 51 172 51 HOH HOH A . B 2 HOH 52 173 52 HOH HOH A . B 2 HOH 53 174 53 HOH HOH A . B 2 HOH 54 175 54 HOH HOH A . B 2 HOH 55 176 55 HOH HOH A . B 2 HOH 56 177 56 HOH HOH A . B 2 HOH 57 178 57 HOH HOH A . B 2 HOH 58 179 58 HOH HOH A . B 2 HOH 59 180 59 HOH HOH A . B 2 HOH 60 181 60 HOH HOH A . B 2 HOH 61 182 61 HOH HOH A . B 2 HOH 62 183 62 HOH HOH A . B 2 HOH 63 184 63 HOH HOH A . B 2 HOH 64 185 64 HOH HOH A . B 2 HOH 65 186 65 HOH HOH A . B 2 HOH 66 187 66 HOH HOH A . B 2 HOH 67 188 67 HOH HOH A . B 2 HOH 68 189 68 HOH HOH A . B 2 HOH 69 190 69 HOH HOH A . B 2 HOH 70 191 70 HOH HOH A . B 2 HOH 71 192 71 HOH HOH A . B 2 HOH 72 193 72 HOH HOH A . B 2 HOH 73 194 73 HOH HOH A . B 2 HOH 74 195 74 HOH HOH A . B 2 HOH 75 196 75 HOH HOH A . B 2 HOH 76 197 76 HOH HOH A . B 2 HOH 77 198 77 HOH HOH A . B 2 HOH 78 199 78 HOH HOH A . B 2 HOH 79 200 79 HOH HOH A . B 2 HOH 80 201 80 HOH HOH A . B 2 HOH 81 202 81 HOH HOH A . B 2 HOH 82 203 82 HOH HOH A . B 2 HOH 83 204 83 HOH HOH A . B 2 HOH 84 205 84 HOH HOH A . B 2 HOH 85 206 85 HOH HOH A . B 2 HOH 86 207 86 HOH HOH A . B 2 HOH 87 208 87 HOH HOH A . B 2 HOH 88 209 88 HOH HOH A . B 2 HOH 89 210 89 HOH HOH A . B 2 HOH 90 211 90 HOH HOH A . B 2 HOH 91 212 91 HOH HOH A . B 2 HOH 92 213 92 HOH HOH A . B 2 HOH 93 214 93 HOH HOH A . B 2 HOH 94 215 94 HOH HOH A . B 2 HOH 95 216 95 HOH HOH A . B 2 HOH 96 217 96 HOH HOH A . B 2 HOH 97 218 97 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 56 A MSE 37 ? MET SELENOMETHIONINE 3 A MSE 100 A MSE 81 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 137 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 28.7236 _pdbx_refine_tls.origin_y 60.9810 _pdbx_refine_tls.origin_z 11.3069 _pdbx_refine_tls.T[1][1] -0.0470 _pdbx_refine_tls.T[2][2] -0.0781 _pdbx_refine_tls.T[3][3] -0.0564 _pdbx_refine_tls.T[1][2] 0.0102 _pdbx_refine_tls.T[1][3] 0.0515 _pdbx_refine_tls.T[2][3] -0.0275 _pdbx_refine_tls.L[1][1] 1.1918 _pdbx_refine_tls.L[2][2] 1.3595 _pdbx_refine_tls.L[3][3] 1.9449 _pdbx_refine_tls.L[1][2] 0.1539 _pdbx_refine_tls.L[1][3] -0.4184 _pdbx_refine_tls.L[2][3] -0.3091 _pdbx_refine_tls.S[1][1] 0.0582 _pdbx_refine_tls.S[2][2] 0.0371 _pdbx_refine_tls.S[3][3] -0.0952 _pdbx_refine_tls.S[1][2] -0.1863 _pdbx_refine_tls.S[1][3] 0.0855 _pdbx_refine_tls.S[2][3] -0.0077 _pdbx_refine_tls.S[2][1] 0.0646 _pdbx_refine_tls.S[3][1] -0.2189 _pdbx_refine_tls.S[3][2] 0.0546 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 15 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 139 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 120 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 81 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 81 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.518 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.432 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU -4 ? CD1 ? A LEU 15 CD1 2 1 Y 1 A LEU -4 ? CD2 ? A LEU 15 CD2 3 1 Y 1 A GLU 26 ? CD ? A GLU 45 CD 4 1 Y 1 A GLU 26 ? OE1 ? A GLU 45 OE1 5 1 Y 1 A GLU 26 ? OE2 ? A GLU 45 OE2 6 1 Y 1 A LYS 35 ? CG ? A LYS 54 CG 7 1 Y 1 A LYS 35 ? CD ? A LYS 54 CD 8 1 Y 1 A LYS 35 ? CE ? A LYS 54 CE 9 1 Y 1 A LYS 35 ? NZ ? A LYS 54 NZ 10 1 Y 1 A ARG 63 ? NE ? A ARG 82 NE 11 1 Y 1 A ARG 63 ? CZ ? A ARG 82 CZ 12 1 Y 1 A ARG 63 ? NH1 ? A ARG 82 NH1 13 1 Y 1 A ARG 63 ? NH2 ? A ARG 82 NH2 14 1 Y 1 A ARG 109 ? CZ ? A ARG 128 CZ 15 1 Y 1 A ARG 109 ? NH1 ? A ARG 128 NH1 16 1 Y 1 A ARG 109 ? NH2 ? A ARG 128 NH2 17 1 Y 1 A LYS 117 ? CD ? A LYS 136 CD 18 1 Y 1 A LYS 117 ? CE ? A LYS 136 CE 19 1 Y 1 A LYS 117 ? NZ ? A LYS 136 NZ 20 1 Y 1 A GLU 119 ? CG ? A GLU 138 CG 21 1 Y 1 A GLU 119 ? CD ? A GLU 138 CD 22 1 Y 1 A GLU 119 ? OE1 ? A GLU 138 OE1 23 1 Y 1 A GLU 119 ? OE2 ? A GLU 138 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A MSE 121 ? A MSE 140 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #