HEADER RNA BINDING PROTEIN 02-AUG-06 2HWW TITLE STRUCTURE OF PIN DOMAIN OF HUMAN SMG6 CAVEAT 2HWW CHIRALITY ERRORS IN SOME RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE-BINDING PROTEIN EST1A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PIN DOMAIN; COMPND 5 SYNONYM: EVER SHORTER TELOMERES 1A, TELOMERASE SUBUNIT EST1A, EST1- COMPND 6 LIKE PROTEIN A, HSMG5/7A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EST1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL 21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEXCS KEYWDS DEGRADATION, DECAY, NMD, EST1A, P BODIES, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GLAVAN,I.BEHM-ANSMANT,E.IZAURRALDE,E.CONTI REVDAT 3 30-AUG-23 2HWW 1 REMARK REVDAT 2 24-FEB-09 2HWW 1 VERSN REVDAT 1 14-NOV-06 2HWW 0 JRNL AUTH F.GLAVAN,I.BEHM-ANSMANT,E.IZAURRALDE,E.CONTI JRNL TITL STRUCTURES OF THE PIN DOMAINS OF SMG6 AND SMG5 REVEAL A JRNL TITL 2 NUCLEASE WITHIN THE MRNA SURVEILLANCE COMPLEX. JRNL REF EMBO J. V. 25 5117 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 17053788 JRNL DOI 10.1038/SJ.EMBOJ.7601377 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3580 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3483 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4840 ; 1.840 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7971 ; 1.494 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 8.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;32.211 ;22.993 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;15.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.322 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3894 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 808 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3648 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1778 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2334 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.139 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2917 ; 1.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 927 ; 0.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3660 ; 1.852 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 3.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 4.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY: 2HWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JEFFAMINE 2000 32%, 0.1M HEPES PH 7.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.43950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.63650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.63650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.43950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.60800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1290 REMARK 465 GLU A 1291 REMARK 465 THR A 1292 REMARK 465 ASP A 1293 REMARK 465 HIS A 1294 REMARK 465 ARG A 1295 REMARK 465 ASP A 1344 REMARK 465 ILE A 1345 REMARK 465 THR A 1346 REMARK 465 GLY A 1347 REMARK 465 GLN A 1348 REMARK 465 LEU A 1349 REMARK 465 GLY A 1350 REMARK 465 PRO A 1373 REMARK 465 ALA A 1374 REMARK 465 SER A 1375 REMARK 465 LYS A 1376 REMARK 465 GLU A 1377 REMARK 465 GLU A 1378 REMARK 465 PRO A 1379 REMARK 465 GLY A 1419 REMARK 465 GLN B 1290 REMARK 465 GLU B 1291 REMARK 465 THR B 1292 REMARK 465 ASP B 1293 REMARK 465 HIS B 1294 REMARK 465 ARG B 1295 REMARK 465 ALA B 1296 REMARK 465 GLY B 1297 REMARK 465 GLY B 1298 REMARK 465 ASP B 1344 REMARK 465 ILE B 1345 REMARK 465 THR B 1346 REMARK 465 GLY B 1347 REMARK 465 GLN B 1348 REMARK 465 LEU B 1349 REMARK 465 GLY B 1350 REMARK 465 MET B 1372 REMARK 465 PRO B 1373 REMARK 465 ALA B 1374 REMARK 465 SER B 1375 REMARK 465 LYS B 1376 REMARK 465 GLU B 1377 REMARK 465 GLU B 1378 REMARK 465 GLY B 1419 REMARK 465 MET C 1239 REMARK 465 GLU C 1240 REMARK 465 LYS C 1288 REMARK 465 GLY C 1289 REMARK 465 GLN C 1290 REMARK 465 GLU C 1291 REMARK 465 THR C 1292 REMARK 465 ASP C 1293 REMARK 465 HIS C 1294 REMARK 465 ARG C 1295 REMARK 465 ALA C 1296 REMARK 465 GLY C 1297 REMARK 465 GLY C 1298 REMARK 465 TYR C 1299 REMARK 465 GLU C 1336 REMARK 465 SER C 1337 REMARK 465 GLU C 1343 REMARK 465 ASP C 1344 REMARK 465 ILE C 1345 REMARK 465 THR C 1346 REMARK 465 GLY C 1347 REMARK 465 GLN C 1348 REMARK 465 LEU C 1349 REMARK 465 GLY C 1350 REMARK 465 ASN C 1351 REMARK 465 ASN C 1352 REMARK 465 ASP C 1370 REMARK 465 PHE C 1371 REMARK 465 MET C 1372 REMARK 465 PRO C 1373 REMARK 465 ALA C 1374 REMARK 465 SER C 1375 REMARK 465 LYS C 1376 REMARK 465 GLU C 1377 REMARK 465 GLU C 1378 REMARK 465 PRO C 1379 REMARK 465 GLY C 1419 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1288 C CG CD CE NZ REMARK 480 GLU A 1319 CG CD OE1 OE2 REMARK 480 ARG A 1321 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 1331 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 1336 CG CD OE1 OE2 REMARK 480 ASN A 1351 CG OD1 ND2 REMARK 480 LYS A 1365 CG CD CE NZ REMARK 480 LYS A 1367 CG CD CE NZ REMARK 480 LYS A 1369 CD CE NZ REMARK 480 MET A 1372 CG SD CE REMARK 480 ILE A 1380 CG1 CG2 CD1 REMARK 480 ARG A 1381 CD NE CZ NH1 NH2 REMARK 480 LYS B 1288 CG CD CE NZ REMARK 480 TYR B 1299 C CB CG CD1 CD2 CE1 CE2 REMARK 480 TYR B 1299 CZ OH REMARK 480 ARG B 1301 CB CG CD NE CZ NH1 NH2 REMARK 480 GLN B 1304 CG CD OE1 NE2 REMARK 480 ARG B 1308 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 1331 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 1343 CB CG CD OE1 OE2 REMARK 480 ASN B 1351 CB CG OD1 ND2 REMARK 480 ARG C 1244 NE CZ NH1 NH2 REMARK 480 GLU C 1267 CG CD OE1 OE2 REMARK 480 ASP C 1284 CG OD1 OD2 REMARK 480 ARG C 1301 O CG CD NE CZ NH1 NH2 REMARK 480 GLN C 1304 CD OE1 NE2 REMARK 480 ARG C 1308 NE CZ NH1 NH2 REMARK 480 GLU C 1312 CG CD OE1 OE2 REMARK 480 GLN C 1316 CD OE1 NE2 REMARK 480 GLU C 1319 CD OE1 OE2 REMARK 480 ARG C 1321 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG C 1331 CG CD NE CZ NH1 NH2 REMARK 480 ILE C 1338 CG1 CD1 REMARK 480 ASP C 1354 CG OD1 OD2 REMARK 480 LYS C 1365 CD CE NZ REMARK 480 ASP C 1366 CG OD1 OD2 REMARK 480 LYS C 1367 CG CD CE NZ REMARK 480 LYS C 1369 CE NZ REMARK 480 ARG C 1381 CG CD NE CZ NH1 NH2 REMARK 480 LEU C 1383 CG CD1 CD2 REMARK 480 ARG C 1393 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS C 1398 CD CE NZ REMARK 480 ARG C 1402 CD NE CZ NH1 NH2 REMARK 480 ASN C 1403 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER C 1330 N ARG C 1331 1.70 REMARK 500 O ARG C 1331 N GLY C 1332 1.71 REMARK 500 OD2 ASP C 1284 CZ PHE C 1340 1.76 REMARK 500 OD2 ASP C 1284 CE2 PHE C 1340 1.87 REMARK 500 O HOH B 76 O HOH B 295 2.06 REMARK 500 NH1 ARG C 1381 O HOH C 181 2.08 REMARK 500 OE2 GLU C 1334 OH TYR C 1363 2.09 REMARK 500 CZ ARG C 1407 O HOH C 283 2.15 REMARK 500 OD1 ASP B 1257 O HOH B 154 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 1240 O HOH B 28 1455 0.53 REMARK 500 CD GLU B 1240 O HOH B 28 1455 0.74 REMARK 500 NZ LYS C 1398 O HOH C 215 1655 1.14 REMARK 500 OE1 GLU B 1240 O HOH B 28 1455 1.71 REMARK 500 OE2 GLU A 1305 NZ LYS A 1365 3555 1.95 REMARK 500 CG GLU B 1240 O HOH B 28 1455 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1319 CB GLU A1319 CG -0.175 REMARK 500 ARG A1381 CG ARG A1381 CD -0.204 REMARK 500 MET B1239 C GLU B1240 N -0.198 REMARK 500 ARG B1331 CB ARG B1331 CG -0.234 REMARK 500 VAL B1406 CB VAL B1406 CG2 -0.132 REMARK 500 ALA C1300 CA ALA C1300 CB -0.129 REMARK 500 ARG C1321 CA ARG C1321 CB -0.155 REMARK 500 SER C1330 C ARG C1331 N -0.348 REMARK 500 ARG C1331 C GLY C1332 N -0.341 REMARK 500 ASP C1354 CB ASP C1354 CG -0.228 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A1369 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 ARG A1381 CG - CD - NE ANGL. DEV. = -17.4 DEGREES REMARK 500 ILE B1380 CG1 - CB - CG2 ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B1396 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C1301 O - C - N ANGL. DEV. = -26.6 DEGREES REMARK 500 VAL C1302 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 GLU C1319 CB - CG - CD ANGL. DEV. = 19.0 DEGREES REMARK 500 SER C1330 CA - C - N ANGL. DEV. = 22.2 DEGREES REMARK 500 SER C1330 O - C - N ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG C1331 C - N - CA ANGL. DEV. = 29.3 DEGREES REMARK 500 ARG C1331 CA - C - N ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG C1331 O - C - N ANGL. DEV. = -21.5 DEGREES REMARK 500 ARG C1341 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG C1341 N - CA - C ANGL. DEV. = 21.6 DEGREES REMARK 500 ASP C1354 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ILE C1380 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1246 -57.48 -130.53 REMARK 500 HIS A1258 30.79 -141.44 REMARK 500 LEU B1246 -55.97 -132.58 REMARK 500 LEU C1246 -53.20 -121.07 REMARK 500 ARG C1301 -14.91 70.63 REMARK 500 ARG C1341 68.68 68.33 REMARK 500 ARG C1381 76.75 67.14 REMARK 500 ASN C1403 75.01 -65.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1342 GLU A 1343 -32.98 REMARK 500 TYR B 1299 ALA B 1300 140.63 REMARK 500 PRO B 1379 ILE B 1380 -139.65 REMARK 500 ALA C 1300 ARG C 1301 -43.80 REMARK 500 ARG C 1301 VAL C 1302 141.13 REMARK 500 ILE C 1338 ALA C 1339 -86.66 REMARK 500 PHE C 1340 ARG C 1341 -69.87 REMARK 500 ARG C 1402 ASN C 1403 -71.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG C1301 -25.54 REMARK 500 ARG C1331 15.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 2HWW A 1239 1419 UNP Q86US8 EST1A_HUMAN 1239 1419 DBREF 2HWW B 1239 1419 UNP Q86US8 EST1A_HUMAN 1239 1419 DBREF 2HWW C 1239 1419 UNP Q86US8 EST1A_HUMAN 1239 1419 SEQRES 1 A 181 MET GLU LEU GLU ILE ARG PRO LEU PHE LEU VAL PRO ASP SEQRES 2 A 181 THR ASN GLY PHE ILE ASP HIS LEU ALA SER LEU ALA ARG SEQRES 3 A 181 LEU LEU GLU SER ARG LYS TYR ILE LEU VAL VAL PRO LEU SEQRES 4 A 181 ILE VAL ILE ASN GLU LEU ASP GLY LEU ALA LYS GLY GLN SEQRES 5 A 181 GLU THR ASP HIS ARG ALA GLY GLY TYR ALA ARG VAL VAL SEQRES 6 A 181 GLN GLU LYS ALA ARG LYS SER ILE GLU PHE LEU GLU GLN SEQRES 7 A 181 ARG PHE GLU SER ARG ASP SER CYS LEU ARG ALA LEU THR SEQRES 8 A 181 SER ARG GLY ASN GLU LEU GLU SER ILE ALA PHE ARG SER SEQRES 9 A 181 GLU ASP ILE THR GLY GLN LEU GLY ASN ASN ASP ASP LEU SEQRES 10 A 181 ILE LEU SER CYS CYS LEU HIS TYR CYS LYS ASP LYS ALA SEQRES 11 A 181 LYS ASP PHE MET PRO ALA SER LYS GLU GLU PRO ILE ARG SEQRES 12 A 181 LEU LEU ARG GLU VAL VAL LEU LEU THR ASP ASP ARG ASN SEQRES 13 A 181 LEU ARG VAL LYS ALA LEU THR ARG ASN VAL PRO VAL ARG SEQRES 14 A 181 ASP ILE PRO ALA PHE LEU THR TRP ALA GLN VAL GLY SEQRES 1 B 181 MET GLU LEU GLU ILE ARG PRO LEU PHE LEU VAL PRO ASP SEQRES 2 B 181 THR ASN GLY PHE ILE ASP HIS LEU ALA SER LEU ALA ARG SEQRES 3 B 181 LEU LEU GLU SER ARG LYS TYR ILE LEU VAL VAL PRO LEU SEQRES 4 B 181 ILE VAL ILE ASN GLU LEU ASP GLY LEU ALA LYS GLY GLN SEQRES 5 B 181 GLU THR ASP HIS ARG ALA GLY GLY TYR ALA ARG VAL VAL SEQRES 6 B 181 GLN GLU LYS ALA ARG LYS SER ILE GLU PHE LEU GLU GLN SEQRES 7 B 181 ARG PHE GLU SER ARG ASP SER CYS LEU ARG ALA LEU THR SEQRES 8 B 181 SER ARG GLY ASN GLU LEU GLU SER ILE ALA PHE ARG SER SEQRES 9 B 181 GLU ASP ILE THR GLY GLN LEU GLY ASN ASN ASP ASP LEU SEQRES 10 B 181 ILE LEU SER CYS CYS LEU HIS TYR CYS LYS ASP LYS ALA SEQRES 11 B 181 LYS ASP PHE MET PRO ALA SER LYS GLU GLU PRO ILE ARG SEQRES 12 B 181 LEU LEU ARG GLU VAL VAL LEU LEU THR ASP ASP ARG ASN SEQRES 13 B 181 LEU ARG VAL LYS ALA LEU THR ARG ASN VAL PRO VAL ARG SEQRES 14 B 181 ASP ILE PRO ALA PHE LEU THR TRP ALA GLN VAL GLY SEQRES 1 C 181 MET GLU LEU GLU ILE ARG PRO LEU PHE LEU VAL PRO ASP SEQRES 2 C 181 THR ASN GLY PHE ILE ASP HIS LEU ALA SER LEU ALA ARG SEQRES 3 C 181 LEU LEU GLU SER ARG LYS TYR ILE LEU VAL VAL PRO LEU SEQRES 4 C 181 ILE VAL ILE ASN GLU LEU ASP GLY LEU ALA LYS GLY GLN SEQRES 5 C 181 GLU THR ASP HIS ARG ALA GLY GLY TYR ALA ARG VAL VAL SEQRES 6 C 181 GLN GLU LYS ALA ARG LYS SER ILE GLU PHE LEU GLU GLN SEQRES 7 C 181 ARG PHE GLU SER ARG ASP SER CYS LEU ARG ALA LEU THR SEQRES 8 C 181 SER ARG GLY ASN GLU LEU GLU SER ILE ALA PHE ARG SER SEQRES 9 C 181 GLU ASP ILE THR GLY GLN LEU GLY ASN ASN ASP ASP LEU SEQRES 10 C 181 ILE LEU SER CYS CYS LEU HIS TYR CYS LYS ASP LYS ALA SEQRES 11 C 181 LYS ASP PHE MET PRO ALA SER LYS GLU GLU PRO ILE ARG SEQRES 12 C 181 LEU LEU ARG GLU VAL VAL LEU LEU THR ASP ASP ARG ASN SEQRES 13 C 181 LEU ARG VAL LYS ALA LEU THR ARG ASN VAL PRO VAL ARG SEQRES 14 C 181 ASP ILE PRO ALA PHE LEU THR TRP ALA GLN VAL GLY FORMUL 4 HOH *221(H2 O) HELIX 1 1 ASP A 1251 SER A 1268 1 18 HELIX 2 2 LEU A 1277 GLY A 1289 1 13 HELIX 3 3 GLY A 1297 SER A 1320 1 24 HELIX 4 4 ASN A 1352 TYR A 1363 1 12 HELIX 5 5 LYS A 1367 MET A 1372 5 6 HELIX 6 6 ASP A 1392 ARG A 1402 1 11 HELIX 7 7 ASP A 1408 GLN A 1417 1 10 HELIX 8 8 ASP B 1251 SER B 1268 1 18 HELIX 9 9 LEU B 1277 GLY B 1289 1 13 HELIX 10 10 ALA B 1300 SER B 1320 1 21 HELIX 11 11 ASN B 1352 TYR B 1363 1 12 HELIX 12 12 LYS B 1367 PHE B 1371 5 5 HELIX 13 13 ASP B 1392 ARG B 1402 1 11 HELIX 14 14 ASP B 1408 GLN B 1417 1 10 HELIX 15 15 ASP C 1251 SER C 1268 1 18 HELIX 16 16 LEU C 1277 ALA C 1287 1 11 HELIX 17 17 VAL C 1303 SER C 1320 1 18 HELIX 18 18 ASP C 1353 TYR C 1363 1 11 HELIX 19 19 ASP C 1392 ARG C 1402 1 11 HELIX 20 20 ASP C 1408 GLN C 1417 1 10 SHEET 1 A 6 GLU A1334 LEU A1335 0 SHEET 2 A 6 LEU A1325 LEU A1328 -1 N ALA A1327 O LEU A1335 SHEET 3 A 6 ILE A1272 PRO A1276 1 N VAL A1275 O ARG A1326 SHEET 4 A 6 LEU A1241 PRO A1250 1 N LEU A1246 O ILE A1272 SHEET 5 A 6 LEU A1382 LEU A1389 1 O VAL A1387 N VAL A1249 SHEET 6 A 6 VAL A1406 ARG A1407 1 O ARG A1407 N LEU A1388 SHEET 1 B 6 GLU B1334 LEU B1335 0 SHEET 2 B 6 LEU B1325 LEU B1328 -1 N ALA B1327 O LEU B1335 SHEET 3 B 6 ILE B1272 PRO B1276 1 N VAL B1275 O ARG B1326 SHEET 4 B 6 LEU B1241 PRO B1250 1 N LEU B1248 O VAL B1274 SHEET 5 B 6 LEU B1382 LEU B1389 1 O LEU B1389 N VAL B1249 SHEET 6 B 6 VAL B1406 ARG B1407 1 O ARG B1407 N LEU B1388 SHEET 1 C 5 LEU C1325 LEU C1328 0 SHEET 2 C 5 ILE C1272 PRO C1276 1 N VAL C1275 O ARG C1326 SHEET 3 C 5 GLU C1242 PRO C1250 1 N LEU C1248 O VAL C1274 SHEET 4 C 5 LEU C1382 LEU C1389 1 O ARG C1384 N GLU C1242 SHEET 5 C 5 LYS C1367 ALA C1368 -1 N LYS C1367 O LEU C1383 SHEET 1 D 5 LEU C1325 LEU C1328 0 SHEET 2 D 5 ILE C1272 PRO C1276 1 N VAL C1275 O ARG C1326 SHEET 3 D 5 GLU C1242 PRO C1250 1 N LEU C1248 O VAL C1274 SHEET 4 D 5 LEU C1382 LEU C1389 1 O ARG C1384 N GLU C1242 SHEET 5 D 5 VAL C1406 ARG C1407 1 O ARG C1407 N LEU C1388 CRYST1 36.879 71.216 181.273 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005517 0.00000