data_2HXE # _entry.id 2HXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HXE RCSB RCSB038872 WWPDB D_1000038872 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-03-10 _pdbx_database_PDB_obs_spr.pdb_id 3GF0 _pdbx_database_PDB_obs_spr.replace_pdb_id 2HXE _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HXB 'Same protein and space group, wildtype with nothing bound.' unspecified PDB 2HXD 'Mutant enzyme variant E145A DCD-DUT in complex with alpha,beta-imido dUTP and magnesium.' unspecified PDB 1OGH 'Same protein in different space group with nothing bound.' unspecified # _pdbx_database_status.entry_id 2HXE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2006-08-03 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bynck, J.H.' 1 'Johansson, E.' 2 # _citation.id primary _citation.title 'Structural evidence for a concerted Bifunctionality in dCTP deaminase-dUTPase from Methanocaldococcus jannaschii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bynck, J.H.' 1 primary 'Willemoes, M.' 2 primary 'Larsen, S.' 3 primary 'Johansson, E.' 4 # _cell.length_a 171.569 _cell.length_b 171.569 _cell.length_c 171.569 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2HXE _cell.pdbx_unique_axis ? _cell.Z_PDB 48 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.entry_id 2HXE _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 211 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dCTP deaminase, dUMP-forming' 23460.869 1 3.5.4.30 E145Q ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 non-polymer syn 'PYROPHOSPHATE 2-' 175.959 1 ? ? ? ? 4 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bifunctional deaminase/diphosphatase, MjDCD-DUT, DCD/DUT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLQIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _entity_poly.pdbx_seq_one_letter_code_can ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLQIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LEU n 1 4 SER n 1 5 ASP n 1 6 LYS n 1 7 ASP n 1 8 ILE n 1 9 ILE n 1 10 ASP n 1 11 TYR n 1 12 VAL n 1 13 THR n 1 14 SER n 1 15 LYS n 1 16 ARG n 1 17 ILE n 1 18 ILE n 1 19 ILE n 1 20 LYS n 1 21 PRO n 1 22 PHE n 1 23 ASN n 1 24 LYS n 1 25 ASP n 1 26 PHE n 1 27 VAL n 1 28 GLY n 1 29 PRO n 1 30 CYS n 1 31 SER n 1 32 TYR n 1 33 ASP n 1 34 VAL n 1 35 THR n 1 36 LEU n 1 37 GLY n 1 38 ASP n 1 39 GLU n 1 40 PHE n 1 41 ILE n 1 42 ILE n 1 43 TYR n 1 44 ASP n 1 45 ASP n 1 46 GLU n 1 47 VAL n 1 48 TYR n 1 49 ASP n 1 50 LEU n 1 51 SER n 1 52 LYS n 1 53 GLU n 1 54 LEU n 1 55 ASN n 1 56 TYR n 1 57 LYS n 1 58 ARG n 1 59 ILE n 1 60 LYS n 1 61 ILE n 1 62 LYS n 1 63 ASN n 1 64 SER n 1 65 ILE n 1 66 LEU n 1 67 VAL n 1 68 CYS n 1 69 PRO n 1 70 LEU n 1 71 ASN n 1 72 TYR n 1 73 ASN n 1 74 LEU n 1 75 THR n 1 76 GLU n 1 77 GLU n 1 78 LYS n 1 79 ILE n 1 80 ASN n 1 81 TYR n 1 82 PHE n 1 83 LYS n 1 84 GLU n 1 85 LYS n 1 86 TYR n 1 87 ASN n 1 88 VAL n 1 89 ASP n 1 90 TYR n 1 91 VAL n 1 92 VAL n 1 93 GLU n 1 94 GLY n 1 95 GLY n 1 96 VAL n 1 97 LEU n 1 98 GLY n 1 99 THR n 1 100 THR n 1 101 ASN n 1 102 GLU n 1 103 TYR n 1 104 ILE n 1 105 GLU n 1 106 LEU n 1 107 PRO n 1 108 ASN n 1 109 ASP n 1 110 ILE n 1 111 SER n 1 112 ALA n 1 113 GLN n 1 114 TYR n 1 115 GLN n 1 116 GLY n 1 117 ARG n 1 118 SER n 1 119 SER n 1 120 LEU n 1 121 GLY n 1 122 ARG n 1 123 VAL n 1 124 PHE n 1 125 LEU n 1 126 THR n 1 127 SER n 1 128 HIS n 1 129 GLN n 1 130 THR n 1 131 ALA n 1 132 GLY n 1 133 TRP n 1 134 ILE n 1 135 ASP n 1 136 ALA n 1 137 GLY n 1 138 PHE n 1 139 LYS n 1 140 GLY n 1 141 LYS n 1 142 ILE n 1 143 THR n 1 144 LEU n 1 145 GLN n 1 146 ILE n 1 147 VAL n 1 148 ALA n 1 149 PHE n 1 150 ASP n 1 151 LYS n 1 152 PRO n 1 153 VAL n 1 154 ILE n 1 155 LEU n 1 156 TYR n 1 157 LYS n 1 158 ASN n 1 159 GLN n 1 160 ARG n 1 161 ILE n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 ILE n 1 166 PHE n 1 167 SER n 1 168 LYS n 1 169 LEU n 1 170 LEU n 1 171 SER n 1 172 PRO n 1 173 ALA n 1 174 ASP n 1 175 VAL n 1 176 GLY n 1 177 TYR n 1 178 SER n 1 179 GLU n 1 180 ARG n 1 181 LYS n 1 182 THR n 1 183 SER n 1 184 LYS n 1 185 TYR n 1 186 ALA n 1 187 TYR n 1 188 GLN n 1 189 LYS n 1 190 SER n 1 191 VAL n 1 192 MET n 1 193 PRO n 1 194 SER n 1 195 LEU n 1 196 ILE n 1 197 HIS n 1 198 LEU n 1 199 ASP n 1 200 ASN n 1 201 HIS n 1 202 LYS n 1 203 LYS n 1 204 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanocaldococcus _entity_src_gen.pdbx_gene_src_gene dcd _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCD_METJA _struct_ref.pdbx_db_accession Q57872 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HXE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q57872 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 204 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 204 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2HXE _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 145 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q57872 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 145 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 145 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 POP non-polymer . 'PYROPHOSPHATE 2-' ? 'H2 O7 P2 -2' 175.959 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2HXE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.44 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.3 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20 % PEG3350, 0.2M tripotassium citrate , pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-07-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator mirror _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.072300 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.072300 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 # _reflns.entry_id 2HXE _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.62 _reflns.d_resolution_low 25 _reflns.number_all 14787 _reflns.number_obs 14787 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.62 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.434 _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HXE _refine.ls_d_res_high 2.620 _refine.ls_d_res_low 24.260 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 12631 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.187 _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.229 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 636 _refine.B_iso_mean 35.064 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.275 _refine.pdbx_overall_ESU_R_Free 0.227 _refine.overall_SU_ML 0.144 _refine.overall_SU_B 6.618 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13267 _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'PDB ENTRY 2HXB' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1671 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.620 _refine_hist.d_res_low 24.260 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1718 0.021 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1542 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2330 1.737 1.972 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3609 0.903 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 204 7.452 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 79 35.615 24.684 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 310 19.432 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 19.605 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 257 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1867 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 345 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 335 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1508 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 828 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1121 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 79 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 46 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 138 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1273 1.351 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 416 0.207 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1667 1.637 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 839 2.398 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 663 3.523 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.619 _refine_ls_shell.d_res_low 2.686 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.R_factor_R_free 0.28 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 954 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HXE _struct.title ;Bifunctional dCTP deaminase-dUTPase mutant enzyme variant E145Q from Methanocaldococcus jannaschii in complex with pyrophosphate and magnesium ; _struct.pdbx_descriptor 'dCTP deaminase, dUMP-forming (E.C.3.5.4.30)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HXE _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'beta barrel, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? SER A 14 ? SER A 4 SER A 14 1 ? 11 HELX_P HELX_P2 2 ASN A 23 ? VAL A 27 ? ASN A 23 VAL A 27 5 ? 5 HELX_P HELX_P3 3 THR A 75 ? ASN A 87 ? THR A 75 ASN A 87 1 ? 13 HELX_P HELX_P4 4 ARG A 117 ? ARG A 122 ? ARG A 117 ARG A 122 1 ? 6 HELX_P HELX_P5 5 LEU A 195 ? ASP A 199 ? LEU A 195 ASP A 199 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B MG . MG ? ? ? 1_555 F POP . O ? ? A MG 205 A POP 277 1_555 ? ? ? ? ? ? ? 2.707 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 A GLU 93 O ? ? A MG 206 A GLU 93 1_555 ? ? ? ? ? ? ? 2.695 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 A GLY 95 O ? ? A MG 206 A GLY 95 1_555 ? ? ? ? ? ? ? 2.541 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 A ASP 150 OD1 ? ? A MG 206 A ASP 150 11_566 ? ? ? ? ? ? ? 2.672 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 20 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 20 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 21 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 21 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.66 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 18 ? LYS A 20 ? ILE A 18 LYS A 20 A 2 VAL A 96 ? GLU A 105 ? VAL A 96 GLU A 105 A 3 LYS A 139 ? ALA A 148 ? LYS A 139 ALA A 148 A 4 LEU A 125 ? THR A 126 ? LEU A 125 THR A 126 B 1 TYR A 32 ? THR A 35 ? TYR A 32 THR A 35 B 2 ARG A 160 ? LYS A 168 ? ARG A 160 LYS A 168 B 3 ILE A 110 ? GLY A 116 ? ILE A 110 GLY A 116 B 4 TRP A 133 ? ILE A 134 ? TRP A 133 ILE A 134 C 1 GLU A 39 ? TYR A 43 ? GLU A 39 TYR A 43 C 2 TYR A 56 ? LYS A 60 ? TYR A 56 LYS A 60 D 1 TYR A 90 ? GLU A 93 ? TYR A 90 GLU A 93 D 2 SER A 64 ? CYS A 68 ? SER A 64 CYS A 68 D 3 VAL A 153 ? TYR A 156 ? VAL A 153 TYR A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 20 ? N LYS A 20 O TYR A 103 ? O TYR A 103 A 2 3 N VAL A 96 ? N VAL A 96 O ILE A 146 ? O ILE A 146 A 3 4 O VAL A 147 ? O VAL A 147 N THR A 126 ? N THR A 126 B 1 2 N TYR A 32 ? N TYR A 32 O LEU A 164 ? O LEU A 164 B 2 3 O SER A 167 ? O SER A 167 N SER A 111 ? N SER A 111 B 3 4 N ALA A 112 ? N ALA A 112 O ILE A 134 ? O ILE A 134 C 1 2 N ILE A 42 ? N ILE A 42 O LYS A 57 ? O LYS A 57 D 1 2 O VAL A 92 ? O VAL A 92 N CYS A 68 ? N CYS A 68 D 2 3 N VAL A 67 ? N VAL A 67 O VAL A 153 ? O VAL A 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG A 205' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG A 206' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 207' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 276' AC5 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE POP A 277' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 POP F . ? POP A 277 . ? 1_555 ? 2 AC2 3 GLU A 93 ? GLU A 93 . ? 1_555 ? 3 AC2 3 GLY A 95 ? GLY A 95 . ? 1_555 ? 4 AC2 3 ASP A 150 ? ASP A 150 . ? 11_566 ? 5 AC3 2 HIS A 128 ? HIS A 128 . ? 8_656 ? 6 AC3 2 THR A 130 ? THR A 130 . ? 11_566 ? 7 AC4 5 GLN A 115 ? GLN A 115 . ? 1_555 ? 8 AC4 5 GLY A 116 ? GLY A 116 . ? 1_555 ? 9 AC4 5 HIS A 128 ? HIS A 128 . ? 1_555 ? 10 AC4 5 THR A 130 ? THR A 130 . ? 8_656 ? 11 AC4 5 ALA A 131 ? ALA A 131 . ? 8_656 ? 12 AC5 9 ARG A 117 ? ARG A 117 . ? 11_566 ? 13 AC5 9 SER A 118 ? SER A 118 . ? 11_566 ? 14 AC5 9 SER A 119 ? SER A 119 . ? 11_566 ? 15 AC5 9 TYR A 177 ? TYR A 177 . ? 1_555 ? 16 AC5 9 SER A 183 ? SER A 183 . ? 1_555 ? 17 AC5 9 LYS A 184 ? LYS A 184 . ? 1_555 ? 18 AC5 9 TYR A 185 ? TYR A 185 . ? 1_555 ? 19 AC5 9 MG B . ? MG A 205 . ? 1_555 ? 20 AC5 9 HOH G . ? HOH A 307 . ? 1_555 ? # _atom_sites.entry_id 2HXE _atom_sites.fract_transf_matrix[1][1] 0.005829 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005829 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASN 158 158 158 ASN ASN A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 PRO 172 172 172 PRO PRO A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 MET 192 192 192 MET MET A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 HIS 197 197 197 HIS HIS A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ASN 200 200 ? ? ? A . n A 1 201 HIS 201 201 ? ? ? A . n A 1 202 LYS 202 202 ? ? ? A . n A 1 203 LYS 203 203 ? ? ? A . n A 1 204 ASP 204 204 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 205 201 MG MG A . C 2 MG 1 206 202 MG MG A . D 2 MG 1 207 203 MG MG A . E 2 MG 1 276 276 MG MG A . F 3 POP 1 277 200 POP POP A . G 4 HOH 1 278 204 HOH HOH A . G 4 HOH 2 279 205 HOH HOH A . G 4 HOH 3 280 206 HOH HOH A . G 4 HOH 4 281 207 HOH HOH A . G 4 HOH 5 282 208 HOH HOH A . G 4 HOH 6 283 209 HOH HOH A . G 4 HOH 7 284 210 HOH HOH A . G 4 HOH 8 285 211 HOH HOH A . G 4 HOH 9 286 212 HOH HOH A . G 4 HOH 10 287 213 HOH HOH A . G 4 HOH 11 288 214 HOH HOH A . G 4 HOH 12 289 215 HOH HOH A . G 4 HOH 13 290 216 HOH HOH A . G 4 HOH 14 291 217 HOH HOH A . G 4 HOH 15 292 218 HOH HOH A . G 4 HOH 16 293 219 HOH HOH A . G 4 HOH 17 294 220 HOH HOH A . G 4 HOH 18 295 221 HOH HOH A . G 4 HOH 19 296 222 HOH HOH A . G 4 HOH 20 297 223 HOH HOH A . G 4 HOH 21 298 224 HOH HOH A . G 4 HOH 22 299 225 HOH HOH A . G 4 HOH 23 300 226 HOH HOH A . G 4 HOH 24 301 227 HOH HOH A . G 4 HOH 25 302 228 HOH HOH A . G 4 HOH 26 303 229 HOH HOH A . G 4 HOH 27 304 230 HOH HOH A . G 4 HOH 28 305 231 HOH HOH A . G 4 HOH 29 306 232 HOH HOH A . G 4 HOH 30 307 233 HOH HOH A . G 4 HOH 31 308 234 HOH HOH A . G 4 HOH 32 309 235 HOH HOH A . G 4 HOH 33 310 236 HOH HOH A . G 4 HOH 34 311 237 HOH HOH A . G 4 HOH 35 312 238 HOH HOH A . G 4 HOH 36 313 239 HOH HOH A . G 4 HOH 37 314 240 HOH HOH A . G 4 HOH 38 315 241 HOH HOH A . G 4 HOH 39 316 242 HOH HOH A . G 4 HOH 40 317 243 HOH HOH A . G 4 HOH 41 318 244 HOH HOH A . G 4 HOH 42 319 245 HOH HOH A . G 4 HOH 43 320 246 HOH HOH A . G 4 HOH 44 321 247 HOH HOH A . G 4 HOH 45 322 248 HOH HOH A . G 4 HOH 46 323 249 HOH HOH A . G 4 HOH 47 324 250 HOH HOH A . G 4 HOH 48 325 251 HOH HOH A . G 4 HOH 49 326 252 HOH HOH A . G 4 HOH 50 327 253 HOH HOH A . G 4 HOH 51 328 254 HOH HOH A . G 4 HOH 52 329 255 HOH HOH A . G 4 HOH 53 330 256 HOH HOH A . G 4 HOH 54 331 257 HOH HOH A . G 4 HOH 55 332 258 HOH HOH A . G 4 HOH 56 333 259 HOH HOH A . G 4 HOH 57 334 260 HOH HOH A . G 4 HOH 58 335 261 HOH HOH A . G 4 HOH 59 336 262 HOH HOH A . G 4 HOH 60 337 263 HOH HOH A . G 4 HOH 61 338 264 HOH HOH A . G 4 HOH 62 339 265 HOH HOH A . G 4 HOH 63 340 266 HOH HOH A . G 4 HOH 64 341 267 HOH HOH A . G 4 HOH 65 342 268 HOH HOH A . G 4 HOH 66 343 269 HOH HOH A . G 4 HOH 67 344 270 HOH HOH A . G 4 HOH 68 345 271 HOH HOH A . G 4 HOH 69 346 272 HOH HOH A . G 4 HOH 70 347 273 HOH HOH A . G 4 HOH 71 348 274 HOH HOH A . G 4 HOH 72 349 275 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0.0000000000 0.0000000000 -1.0000000000 171.5690000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 171.5690000000 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 171.5690000000 -1.0000000000 0.0000000000 0.0000000000 171.5690000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 278 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLU 93 ? A GLU 93 ? 1_555 MG ? C MG . ? A MG 206 ? 1_555 O ? A GLY 95 ? A GLY 95 ? 1_555 101.0 ? 2 O ? A GLU 93 ? A GLU 93 ? 1_555 MG ? C MG . ? A MG 206 ? 1_555 OD1 ? A ASP 150 ? A ASP 150 ? 11_566 99.4 ? 3 O ? A GLY 95 ? A GLY 95 ? 1_555 MG ? C MG . ? A MG 206 ? 1_555 OD1 ? A ASP 150 ? A ASP 150 ? 11_566 83.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2009-03-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC5 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 DNA . ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 Fourier synthesis ? ? ? ? phasing ? ? ? 6 REFMAC 5.2.0005 ? ? ? ? refinement ? ? ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 87 ? ? O A HOH 313 ? ? 2.14 2 1 O A HOH 306 ? ? O A HOH 342 ? ? 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 58 ? ? CZ A ARG 58 ? ? NH1 A ARG 58 ? ? 123.38 120.30 3.08 0.50 N 2 1 NE A ARG 58 ? ? CZ A ARG 58 ? ? NH2 A ARG 58 ? ? 116.42 120.30 -3.88 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 30 ? ? -141.97 38.17 2 1 ASN A 63 ? ? -129.84 -50.06 3 1 ASN A 73 ? ? 52.32 76.33 4 1 THR A 130 ? B 31.74 34.14 5 1 ALA A 131 ? B -96.53 -138.69 6 1 TRP A 133 ? B -23.37 149.51 7 1 ASP A 150 ? ? -126.76 -62.40 8 1 TYR A 187 ? ? 86.64 5.47 9 1 GLN A 188 ? ? -27.91 120.57 10 1 SER A 190 ? ? -139.52 -157.75 11 1 PRO A 193 ? ? -57.66 172.32 12 1 LEU A 195 ? ? -108.83 42.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 200 ? A ASN 200 2 1 Y 1 A HIS 201 ? A HIS 201 3 1 Y 1 A LYS 202 ? A LYS 202 4 1 Y 1 A LYS 203 ? A LYS 203 5 1 Y 1 A ASP 204 ? A ASP 204 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'PYROPHOSPHATE 2-' POP 4 water HOH #