HEADER BIOSYNTHETIC PROTEIN 04-AUG-06 2HXV TITLE CRYSTAL STRUCTURE OF A DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE TITLE 2 DEAMINASE/ 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (TM1828) TITLE 3 FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE/ 5- COMPND 3 AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE; COMPND 4 CHAIN: A; COMPND 5 EC: 3.5.4.26, 1.1.1.193; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1828; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS OXIDOREDUCTASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2HXV 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2HXV 1 REMARK REVDAT 5 18-OCT-17 2HXV 1 REMARK REVDAT 4 13-JUL-11 2HXV 1 VERSN REVDAT 3 23-MAR-11 2HXV 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2HXV 1 VERSN REVDAT 1 15-AUG-06 2HXV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF JRNL TITL 2 DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE/ JRNL TITL 3 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (TM1828) JRNL TITL 4 FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2536 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2873 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2639 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3895 ; 1.690 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6124 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.695 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;31.676 ;23.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;12.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3139 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 544 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2786 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1445 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1766 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 80 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1796 ; 2.415 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 716 ; 0.641 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2840 ; 3.353 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 5.473 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 7.869 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5270 -3.0330 22.8380 REMARK 3 T TENSOR REMARK 3 T11: -0.0580 T22: -0.0883 REMARK 3 T33: -0.0689 T12: -0.0005 REMARK 3 T13: -0.0073 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.8457 L22: 3.0063 REMARK 3 L33: 0.1820 L12: 1.0195 REMARK 3 L13: -0.0024 L23: -0.1763 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0215 S13: 0.0484 REMARK 3 S21: 0.0132 S22: -0.0256 S23: 0.1208 REMARK 3 S31: -0.0016 S32: -0.0261 S33: -0.0069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2700 27.8880 15.9550 REMARK 3 T TENSOR REMARK 3 T11: -0.0985 T22: -0.0686 REMARK 3 T33: -0.0605 T12: -0.0220 REMARK 3 T13: 0.0021 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.3364 L22: 0.1889 REMARK 3 L33: 1.4062 L12: -0.0552 REMARK 3 L13: 0.4115 L23: -0.3370 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.0137 S13: 0.0151 REMARK 3 S21: 0.0058 S22: -0.0261 S23: -0.0041 REMARK 3 S31: -0.0604 S32: 0.1278 S33: 0.0554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 4. NADPH WAS MODELED BASED ON DENSITY AND PROPOSED REMARK 3 FUNCTION. 5. ZN METAL IDENTIFICATION SUPPORTED BY EXCITATION AND REMARK 3 FLOURESENCE SCAN ANALYSIS, IN ADDITION TO GEOMETRY AND HOMOLOGS. REMARK 3 6.GLYCEROL AND CL WERE MODELED BASED ON CRYSTALLIZATION REMARK 3 CONDITIONS. 7. RESIDUES 80-81 WERE MODELED IN VERY WEAK DENSITY. REMARK 3 8. UNKNOWN DENSITIES NEAR LYS 14 AND LYS 304 WERE NOT MODELED. REMARK 4 REMARK 4 2HXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-06; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5; 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000001; 0.979170, 0.918370, REMARK 200 0.978913 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING); NULL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.341 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.945 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.71900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% PEG-3000, 10.0% GLYCEROL, 30.0% REMARK 280 PEG-400, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K. 5.0% PEG-3000, 10.0% GLYCEROL, 30.0% REMARK 280 PEG-400, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.09000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.94500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 52.09000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 72.94500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.09000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 72.94500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 52.09000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 72.94500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.09000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 72.94500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.09000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 72.94500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.09000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.94500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.09000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.09000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS THE BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -3 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 7 CD CE NZ REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 96 CE NZ REMARK 470 VAL A 108 CG1 CG2 REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 GLU A 131 CD OE1 OE2 REMARK 470 LYS A 134 CE NZ REMARK 470 LYS A 146 CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 LYS A 222 CE NZ REMARK 470 LYS A 228 CD CE NZ REMARK 470 ARG A 268 CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CE NZ REMARK 470 LYS A 308 CD CE NZ REMARK 470 LYS A 327 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 66.69 -105.99 REMARK 500 ASP A 174 -75.25 -140.49 REMARK 500 ASN A 201 57.01 38.69 REMARK 500 ASP A 335 -111.20 54.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 ND1 REMARK 620 2 CYS A 77 SG 106.8 REMARK 620 3 CYS A 86 SG 115.6 116.5 REMARK 620 4 HOH A 708 O 103.8 107.0 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283681 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHH. DBREF 2HXV A 1 348 UNP Q9X2E8 Q9X2E8_THEMA 1 348 SEQADV 2HXV MSE A -11 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV GLY A -10 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV SER A -9 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV ASP A -8 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV LYS A -7 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV ILE A -6 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A -5 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A -4 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A -3 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A -2 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A -1 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV HIS A 0 UNP Q9X2E8 EXPRESSION TAG SEQADV 2HXV MSE A 1 UNP Q9X2E8 MET 1 MODIFIED RESIDUE SEQADV 2HXV MSE A 6 UNP Q9X2E8 MET 6 MODIFIED RESIDUE SEQADV 2HXV MSE A 53 UNP Q9X2E8 MET 53 MODIFIED RESIDUE SEQADV 2HXV MSE A 183 UNP Q9X2E8 MET 183 MODIFIED RESIDUE SEQADV 2HXV MSE A 342 UNP Q9X2E8 MET 342 MODIFIED RESIDUE SEQRES 1 A 360 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 360 TYR GLU THR PHE MSE LYS ARG ALA ILE GLU LEU ALA LYS SEQRES 3 A 360 LYS GLY LEU GLY ARG VAL ASN PRO ASN PRO PRO VAL GLY SEQRES 4 A 360 ALA VAL VAL VAL LYS ASP GLY ARG ILE ILE ALA GLU GLY SEQRES 5 A 360 PHE HIS PRO TYR PHE GLY GLY PRO HIS ALA GLU ARG MSE SEQRES 6 A 360 ALA ILE GLU SER ALA ARG LYS LYS GLY GLU ASP LEU ARG SEQRES 7 A 360 GLY ALA THR LEU ILE VAL THR LEU GLU PRO CYS ASP HIS SEQRES 8 A 360 HIS GLY LYS THR PRO PRO CYS THR ASP LEU ILE ILE GLU SEQRES 9 A 360 SER GLY ILE LYS THR VAL VAL ILE GLY THR ARG ASP PRO SEQRES 10 A 360 ASN PRO VAL SER GLY ASN GLY VAL GLU LYS PHE ARG ASN SEQRES 11 A 360 HIS GLY ILE GLU VAL ILE GLU GLY VAL LEU GLU GLU GLU SEQRES 12 A 360 VAL LYS LYS LEU CYS GLU PHE PHE ILE THR TYR VAL THR SEQRES 13 A 360 LYS LYS ARG PRO PHE VAL ALA LEU LYS TYR ALA SER THR SEQRES 14 A 360 LEU ASP GLY LYS ILE ALA ASP HIS ARG GLY ASP SER LYS SEQRES 15 A 360 TRP ILE THR ASP LYS LEU ARG PHE LYS VAL HIS GLU MSE SEQRES 16 A 360 ARG ASN ILE TYR SER ALA VAL LEU VAL GLY ALA GLY THR SEQRES 17 A 360 VAL LEU LYS ASP ASN PRO GLN LEU THR CYS ARG LEU LYS SEQRES 18 A 360 GLU GLY ARG ASN PRO VAL ARG VAL ILE LEU ASP ARG LYS SEQRES 19 A 360 GLY VAL LEU SER GLY LYS VAL PHE ARG VAL PHE GLU GLU SEQRES 20 A 360 ASN ALA ARG VAL ILE VAL PHE THR GLU SER GLU GLU ALA SEQRES 21 A 360 GLU TYR PRO PRO HIS VAL GLU LYS ALA LEU SER ASP CYS SEQRES 22 A 360 SER VAL GLU SER ILE LEU ARG ASN LEU TYR GLU ARG ASP SEQRES 23 A 360 ILE ASP SER VAL LEU VAL GLU GLY GLY SER LYS VAL PHE SEQRES 24 A 360 SER GLU PHE LEU ASP HIS ALA ASP VAL VAL PHE GLY PHE SEQRES 25 A 360 TYR SER THR LYS ILE PHE GLY LYS GLY LEU ASP VAL PHE SEQRES 26 A 360 SER GLY TYR LEU SER ASP VAL SER VAL PRO PRO LYS PHE SEQRES 27 A 360 LYS VAL VAL ASN VAL GLU PHE SER ASP SER GLU PHE LEU SEQRES 28 A 360 VAL GLU MSE ARG PRO CYS SER ARG GLU MODRES 2HXV MSE A 1 MET SELENOMETHIONINE MODRES 2HXV MSE A 6 MET SELENOMETHIONINE MODRES 2HXV MSE A 53 MET SELENOMETHIONINE MODRES 2HXV MSE A 183 MET SELENOMETHIONINE MODRES 2HXV MSE A 342 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 6 8 HET MSE A 53 8 HET MSE A 183 8 HET MSE A 342 8 HET ZN A 500 1 HET CL A 501 1 HET NDP A 400 48 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 NDP C21 H30 N7 O17 P3 FORMUL 5 GOL 8(C3 H8 O3) FORMUL 13 HOH *205(H2 O) HELIX 1 1 HIS A -3 LYS A 15 1 19 HELIX 2 2 HIS A 49 LYS A 61 1 13 HELIX 3 3 PRO A 85 GLY A 94 1 10 HELIX 4 4 ASN A 106 GLY A 110 5 5 HELIX 5 5 ASN A 111 ASN A 118 1 8 HELIX 6 6 LEU A 128 CYS A 136 1 9 HELIX 7 7 CYS A 136 LYS A 146 1 11 HELIX 8 8 LEU A 176 TYR A 187 1 12 HELIX 9 9 ALA A 194 ASN A 201 1 8 HELIX 10 10 PHE A 230 GLU A 234 5 5 HELIX 11 11 SER A 262 ARG A 273 1 12 HELIX 12 12 GLY A 283 LEU A 291 1 9 HELIX 13 13 ASP A 292 ALA A 294 5 3 SHEET 1 A 5 ARG A 35 PHE A 41 0 SHEET 2 A 5 GLY A 27 LYS A 32 -1 N VAL A 30 O ILE A 37 SHEET 3 A 5 THR A 69 LEU A 74 -1 O ILE A 71 N VAL A 29 SHEET 4 A 5 THR A 97 THR A 102 1 O VAL A 99 N LEU A 70 SHEET 5 A 5 GLU A 122 GLU A 125 1 O ILE A 124 N ILE A 100 SHEET 1 B 9 GLU A 255 LEU A 258 0 SHEET 2 B 9 VAL A 239 THR A 243 1 N VAL A 241 O ALA A 257 SHEET 3 B 9 VAL A 215 LEU A 219 1 N ARG A 216 O ILE A 240 SHEET 4 B 9 ALA A 189 GLY A 193 1 N VAL A 190 O VAL A 217 SHEET 5 B 9 SER A 277 VAL A 280 1 O LEU A 279 N LEU A 191 SHEET 6 B 9 PHE A 149 THR A 157 1 N ALA A 151 O VAL A 280 SHEET 7 B 9 VAL A 296 SER A 302 1 O PHE A 300 N TYR A 154 SHEET 8 B 9 GLU A 337 PRO A 344 -1 O PHE A 338 N TYR A 301 SHEET 9 B 9 PHE A 326 SER A 334 -1 N LYS A 327 O ARG A 343 SHEET 1 C 2 LYS A 161 ALA A 163 0 SHEET 2 C 2 LEU A 310 ASP A 311 -1 O LEU A 310 N ILE A 162 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N TYR A 2 1555 1555 1.34 LINK C PHE A 5 N MSE A 6 1555 1555 1.35 LINK C MSE A 6 N LYS A 7 1555 1555 1.32 LINK C ARG A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ALA A 54 1555 1555 1.33 LINK C GLU A 182 N MSE A 183 1555 1555 1.32 LINK C MSE A 183 N ARG A 184 1555 1555 1.34 LINK C GLU A 341 N MSE A 342 1555 1555 1.34 LINK C MSE A 342 N ARG A 343 1555 1555 1.33 LINK ND1 HIS A 49 ZN ZN A 500 1555 1555 2.13 LINK SG CYS A 77 ZN ZN A 500 1555 1555 2.30 LINK SG CYS A 86 ZN ZN A 500 1555 1555 2.22 LINK ZN ZN A 500 O HOH A 708 1555 1555 2.09 CISPEP 1 ASN A 21 PRO A 22 0 0.15 CISPEP 2 GLY A 282 GLY A 283 0 -1.04 SITE 1 AC1 4 HIS A 49 CYS A 77 CYS A 86 HOH A 708 SITE 1 AC2 5 ARG A 184 LEU A 204 GOL A 505 HOH A 596 SITE 2 AC2 5 HOH A 714 SITE 1 AC3 27 ALA A 155 ILE A 162 GLY A 167 SER A 169 SITE 2 AC3 27 GLY A 193 ALA A 194 GLY A 195 THR A 196 SITE 3 AC3 27 LYS A 199 ASP A 200 LEU A 219 ASP A 220 SITE 4 AC3 27 ARG A 221 LYS A 222 CYS A 261 ILE A 266 SITE 5 AC3 27 GLU A 281 GLY A 283 SER A 284 LYS A 285 SITE 6 AC3 27 VAL A 286 GLU A 289 LEU A 310 GOL A 503 SITE 7 AC3 27 HOH A 524 HOH A 527 HOH A 605 SITE 1 AC4 7 ARG A 19 GLY A 67 GLY A 94 ASN A 185 SITE 2 AC4 7 GLU A 210 GLY A 211 HOH A 526 SITE 1 AC5 7 SER A 169 ILE A 172 THR A 173 NDP A 400 SITE 2 AC5 7 GOL A 505 HOH A 606 HOH A 704 SITE 1 AC6 3 ARG A 147 ASP A 292 ASP A 295 SITE 1 AC7 4 ASP A 200 GLU A 281 CL A 501 GOL A 503 SITE 1 AC8 7 VAL A 31 LYS A 32 ASP A 33 GLY A 34 SITE 2 AC8 7 GLY A 67 ALA A 68 THR A 69 SITE 1 AC9 8 THR A 303 LYS A 304 ILE A 305 TYR A 316 SITE 2 AC9 8 PRO A 323 PRO A 324 LYS A 325 HOH A 539 SITE 1 BC1 4 LYS A 179 ASN A 330 GLU A 332 GLU A 341 SITE 1 BC2 4 ASP A 88 GLU A 92 HIS A 119 LYS A 209 CRYST1 104.180 104.180 145.890 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006850 0.00000