HEADER HYDROLASE 07-AUG-06 2HYP TITLE CRYSTAL STRUCTURE OF RV0805 D66A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RV0805; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE; COMPND 5 SYNONYM: ICC PROTEIN; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ICC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTC KEYWDS METALLOPHOSPHOESTERASE, CAMP, PHOSPHODIESTERASE, BI-NUCLEAR ACTIVE KEYWDS 2 SITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.SHENOY,M.CAPUDER,P.DRASKOVIC,D.LAMBA,S.S.VISWESWARIAH,M.PODOBNIK REVDAT 6 21-FEB-24 2HYP 1 REMARK REVDAT 5 20-OCT-21 2HYP 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2HYP 1 REMARK REVDAT 3 13-JUL-11 2HYP 1 VERSN REVDAT 2 24-FEB-09 2HYP 1 VERSN REVDAT 1 26-DEC-06 2HYP 0 JRNL AUTH A.R.SHENOY,M.CAPUDER,P.DRASKOVIC,D.LAMBA,S.S.VISWESWARIAH, JRNL AUTH 2 M.PODOBNIK JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE RV0805 CYCLIC JRNL TITL 2 NUCLEOTIDE PHOSPHODIESTERASE FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 365 211 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17059828 JRNL DOI 10.1016/J.JMB.2006.10.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.SHENOY,N.SREENATH,M.PODOBNIK,M.KOVACEVIC, REMARK 1 AUTH 2 S.S.VISWESWARIAH REMARK 1 TITL THE RV0805 GENE FROM MYCOBACTERIUM TUBERCULOSIS ENCODES A REMARK 1 TITL 2 3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE: BIOCHEMICAL AND REMARK 1 TITL 3 MUTATIONAL ANALYSIS. REMARK 1 REF BIOCHEMISTRY V. 44 15695 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16313172 REMARK 1 DOI 10.1021/BI0512391 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : -2.25000 REMARK 3 B33 (A**2) : 4.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1781 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2431 ; 1.142 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 4.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;36.127 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1346 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 743 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1191 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1178 ; 0.447 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1840 ; 0.777 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 1.037 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 591 ; 1.657 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3460 15.5288 -7.5018 REMARK 3 T TENSOR REMARK 3 T11: -0.3552 T22: -0.3346 REMARK 3 T33: -0.1804 T12: -0.0007 REMARK 3 T13: -0.0379 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.8234 L22: 4.4218 REMARK 3 L33: 1.8132 L12: 0.0141 REMARK 3 L13: -0.0211 L23: -0.4589 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: 0.3970 S13: 0.1725 REMARK 3 S21: -0.4827 S22: 0.0129 S23: -0.0027 REMARK 3 S31: -0.0484 S32: 0.0170 S33: 0.0753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI) REMARK 200 OPTICS : MONOCHROMATOR, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MGCL2, CACODYLATE, NABR, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.64850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.64850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS:-X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 HIS A 9 REMARK 465 ARG A 29 REMARK 465 ARG A 30 REMARK 465 LEU A 31 REMARK 465 TYR A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 VAL A 35 REMARK 465 TYR A 229 REMARK 465 THR A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 232 REMARK 465 LEU A 233 REMARK 465 THR A 234 REMARK 465 VAL A 235 REMARK 465 ALA A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 GLY A 239 REMARK 465 THR A 240 REMARK 465 ARG A 241 REMARK 465 GLY A 242 REMARK 465 ARG A 243 REMARK 465 ASP A 244 REMARK 465 GLY A 245 REMARK 465 ALA A 246 REMARK 465 GLN A 247 REMARK 465 LEU A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 GLY A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 VAL A 272 REMARK 465 GLY A 273 REMARK 465 THR A 274 REMARK 465 PHE A 275 REMARK 465 VAL A 276 REMARK 465 SER A 277 REMARK 465 PRO A 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 63 O HOH A 608 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 143 O HOH A 584 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -168.26 -115.65 REMARK 500 THR A 61 48.92 -86.08 REMARK 500 ASP A 125 -115.35 55.54 REMARK 500 HIS A 169 -64.56 -93.17 REMARK 500 HIS A 207 -38.22 80.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 444 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 HIS A 23 NE2 114.7 REMARK 620 3 ASP A 63 OD2 85.5 106.9 REMARK 620 4 HIS A 209 NE2 83.3 97.5 155.6 REMARK 620 5 CAC A 400 O1 155.3 89.6 91.8 89.4 REMARK 620 6 HOH A 608 O 75.6 163.2 59.2 97.0 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 555 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 ASN A 97 OD1 94.6 REMARK 620 3 HIS A 169 NE2 94.0 84.3 REMARK 620 4 HIS A 207 ND1 167.9 97.4 88.5 REMARK 620 5 CAC A 400 O2 87.8 82.5 166.8 92.4 REMARK 620 6 HOH A 608 O 61.7 149.1 114.9 106.6 77.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HY1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD TYPE RV0805 REMARK 900 RELATED ID: 2HYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV0805 N97A MUTANT DBREF 2HYP A 3 278 UNP O06629 O06629_MYCTU 3 278 SEQADV 2HYP GLY A -1 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ALA A 0 UNP O06629 CLONING ARTIFACT SEQADV 2HYP MET A 1 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ASP A 2 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ALA A 66 UNP O06629 ASP 66 ENGINEERED MUTATION SEQRES 1 A 280 GLY ALA MET ASP ARG LEU ARG ALA ALA GLU HIS PRO ARG SEQRES 2 A 280 PRO ASP TYR VAL LEU LEU HIS ILE SER ASP THR HIS LEU SEQRES 3 A 280 ILE GLY GLY ASP ARG ARG LEU TYR GLY ALA VAL ASP ALA SEQRES 4 A 280 ASP ASP ARG LEU GLY GLU LEU LEU GLU GLN LEU ASN GLN SEQRES 5 A 280 SER GLY LEU ARG PRO ASP ALA ILE VAL PHE THR GLY ASP SEQRES 6 A 280 LEU ALA ALA LYS GLY GLU PRO ALA ALA TYR ARG LYS LEU SEQRES 7 A 280 ARG GLY LEU VAL GLU PRO PHE ALA ALA GLN LEU GLY ALA SEQRES 8 A 280 GLU LEU VAL TRP VAL MET GLY ASN HIS ASP ASP ARG ALA SEQRES 9 A 280 GLU LEU ARG LYS PHE LEU LEU ASP GLU ALA PRO SER MET SEQRES 10 A 280 ALA PRO LEU ASP ARG VAL CYS MET ILE ASP GLY LEU ARG SEQRES 11 A 280 ILE ILE VAL LEU ASP THR SER VAL PRO GLY HIS HIS HIS SEQRES 12 A 280 GLY GLU ILE ARG ALA SER GLN LEU GLY TRP LEU ALA GLU SEQRES 13 A 280 GLU LEU ALA THR PRO ALA PRO ASP GLY THR ILE LEU ALA SEQRES 14 A 280 LEU HIS HIS PRO PRO ILE PRO SER VAL LEU ASP MET ALA SEQRES 15 A 280 VAL THR VAL GLU LEU ARG ASP GLN ALA ALA LEU GLY ARG SEQRES 16 A 280 VAL LEU ARG GLY THR ASP VAL ARG ALA ILE LEU ALA GLY SEQRES 17 A 280 HIS LEU HIS TYR SER THR ASN ALA THR PHE VAL GLY ILE SEQRES 18 A 280 PRO VAL SER VAL ALA SER ALA THR CYS TYR THR GLN ASP SEQRES 19 A 280 LEU THR VAL ALA ALA GLY GLY THR ARG GLY ARG ASP GLY SEQRES 20 A 280 ALA GLN GLY CYS ASN LEU VAL HIS VAL TYR PRO ASP THR SEQRES 21 A 280 VAL VAL HIS SER VAL ILE PRO LEU GLY GLY GLY GLU THR SEQRES 22 A 280 VAL GLY THR PHE VAL SER PRO HET FE A 444 1 HET MN A 555 1 HET BR A 301 1 HET BR A 302 1 HET BR A 303 1 HET BR A 304 1 HET CAC A 400 5 HETNAM FE FE (III) ION HETNAM MN MANGANESE (II) ION HETNAM BR BROMIDE ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 2 FE FE 3+ FORMUL 3 MN MN 2+ FORMUL 4 BR 4(BR 1-) FORMUL 8 CAC C2 H6 AS O2 1- FORMUL 9 HOH *55(H2 O) HELIX 1 1 ASP A 36 GLY A 52 1 17 HELIX 2 2 GLU A 69 GLY A 88 1 20 HELIX 3 3 ASP A 100 LEU A 108 1 9 HELIX 4 4 ARG A 145 ALA A 157 1 13 HELIX 5 5 LEU A 177 THR A 182 1 6 HELIX 6 6 ASP A 187 ARG A 196 1 10 SHEET 1 A 5 GLU A 90 TRP A 93 0 SHEET 2 A 5 ALA A 57 PHE A 60 1 N PHE A 60 O VAL A 92 SHEET 3 A 5 TYR A 14 ILE A 19 1 N LEU A 17 O VAL A 59 SHEET 4 A 5 CYS A 249 VAL A 254 -1 O ASN A 250 N HIS A 18 SHEET 5 A 5 VAL A 259 ILE A 264 -1 O ILE A 264 N CYS A 249 SHEET 1 B 6 ARG A 120 ILE A 124 0 SHEET 2 B 6 LEU A 127 VAL A 131 -1 O LEU A 127 N ILE A 124 SHEET 3 B 6 THR A 164 ALA A 167 1 O ALA A 167 N ILE A 130 SHEET 4 B 6 VAL A 200 ALA A 205 1 O LEU A 204 N LEU A 166 SHEET 5 B 6 ILE A 219 VAL A 223 1 O SER A 222 N ILE A 203 SHEET 6 B 6 THR A 212 PHE A 216 -1 N ALA A 214 O VAL A 221 LINK OD1 ASP A 21 FE FE A 444 1555 1555 2.04 LINK NE2 HIS A 23 FE FE A 444 1555 1555 2.20 LINK OD2 ASP A 63 FE FE A 444 1555 1555 2.35 LINK OD2 ASP A 63 MN MN A 555 1555 1555 2.15 LINK OD1 ASN A 97 MN MN A 555 1555 1555 2.12 LINK NE2 HIS A 169 MN MN A 555 1555 1555 2.11 LINK ND1 HIS A 207 MN MN A 555 1555 1555 2.20 LINK NE2 HIS A 209 FE FE A 444 1555 1555 2.26 LINK O1 CAC A 400 FE FE A 444 1555 1555 2.33 LINK O2 CAC A 400 MN MN A 555 1555 1555 2.21 LINK FE FE A 444 O HOH A 608 1555 1555 1.96 LINK MN MN A 555 O HOH A 608 1555 1555 2.06 SITE 1 AC1 7 ASP A 21 HIS A 23 ASP A 63 HIS A 209 SITE 2 AC1 7 CAC A 400 MN A 555 HOH A 608 SITE 1 AC2 7 ASP A 63 ASN A 97 HIS A 169 HIS A 207 SITE 2 AC2 7 CAC A 400 FE A 444 HOH A 608 SITE 1 AC3 2 PRO A 113 SER A 114 SITE 1 AC4 2 TYR A 255 ASP A 257 SITE 1 AC5 4 ARG A 101 MET A 123 ASP A 125 ARG A 145 SITE 1 AC6 4 VAL A 121 ARG A 186 HOH A 593 HOH A 603 SITE 1 AC7 9 HIS A 23 ASP A 63 ASN A 97 HIS A 98 SITE 2 AC7 9 HIS A 207 HIS A 209 FE A 444 MN A 555 SITE 3 AC7 9 HOH A 608 CRYST1 55.297 93.709 50.924 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019637 0.00000