data_2HYQ # _entry.id 2HYQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HYQ pdb_00002hyq 10.2210/pdb2hyq/pdb RCSB RCSB038919 ? ? WWPDB D_1000038919 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GTY 'Crystal structure of unliganded griffithsin' unspecified PDB 2GUC 'Crystal structure of a complex of griffithsin with mannose at 1.78 A resolution' unspecified PDB 2GUD 'Crystal structure of a complex of griffithsin with mannose at 0.94 A resolution' unspecified PDB 2GUE 'Crystal structure of a complex of griffithsin with N-acetylglucosamine' unspecified PDB 2GUX 'Selenomethionine derivative of griffithsin' unspecified PDB 2HYR 'Crystal structure of a complex of griffithsin with maltose' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HYQ _pdbx_database_status.recvd_initial_deposition_date 2006-08-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ziolkowska, N.E.' 1 'Wlodawer, A.' 2 # _citation.id primary _citation.title ;Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. ; _citation.journal_abbrev Proteins _citation.journal_volume 67 _citation.page_first 661 _citation.page_last 670 _citation.year 2007 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17340634 _citation.pdbx_database_id_DOI 10.1002/prot.21336 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ziolkowska, N.E.' 1 ? primary 'Shenoy, S.R.' 2 ? primary ;O'keefe, B.R. ; 3 ? primary 'McMahon, J.B.' 4 ? primary 'Palmer, K.E.' 5 ? primary 'Dwek, R.A.' 6 ? primary 'Wormald, M.R.' 7 ? primary 'Wlodawer, A.' 8 ? # _cell.entry_id 2HYQ _cell.length_a 139.380 _cell.length_b 34.230 _cell.length_c 55.110 _cell.angle_alpha 90.00 _cell.angle_beta 110.50 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HYQ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Griffithsin 12726.842 2 ? ? ? ? 2 branched man 'alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose' 342.297 6 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 GRFT 2 6alpha-alpha-mannobiose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFE TNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_seq_one_letter_code_can ;XSLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMG RRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 LEU n 1 4 THR n 1 5 HIS n 1 6 ARG n 1 7 LYS n 1 8 PHE n 1 9 GLY n 1 10 GLY n 1 11 SER n 1 12 GLY n 1 13 GLY n 1 14 SER n 1 15 PRO n 1 16 PHE n 1 17 SER n 1 18 GLY n 1 19 LEU n 1 20 SER n 1 21 SER n 1 22 ILE n 1 23 ALA n 1 24 VAL n 1 25 ARG n 1 26 SER n 1 27 GLY n 1 28 SER n 1 29 TYR n 1 30 LEU n 1 31 ASP n 1 32 ALA n 1 33 ILE n 1 34 ILE n 1 35 ILE n 1 36 ASP n 1 37 GLY n 1 38 VAL n 1 39 HIS n 1 40 HIS n 1 41 GLY n 1 42 GLY n 1 43 SER n 1 44 GLY n 1 45 GLY n 1 46 ASN n 1 47 LEU n 1 48 SER n 1 49 PRO n 1 50 THR n 1 51 PHE n 1 52 THR n 1 53 PHE n 1 54 GLY n 1 55 SER n 1 56 GLY n 1 57 GLU n 1 58 TYR n 1 59 ILE n 1 60 SER n 1 61 ASN n 1 62 MET n 1 63 THR n 1 64 ILE n 1 65 ARG n 1 66 SER n 1 67 GLY n 1 68 ASP n 1 69 TYR n 1 70 ILE n 1 71 ASP n 1 72 ASN n 1 73 ILE n 1 74 SER n 1 75 PHE n 1 76 GLU n 1 77 THR n 1 78 ASN n 1 79 MET n 1 80 GLY n 1 81 ARG n 1 82 ARG n 1 83 PHE n 1 84 GLY n 1 85 PRO n 1 86 TYR n 1 87 GLY n 1 88 GLY n 1 89 SER n 1 90 GLY n 1 91 GLY n 1 92 SER n 1 93 ALA n 1 94 ASN n 1 95 THR n 1 96 LEU n 1 97 SER n 1 98 ASN n 1 99 VAL n 1 100 LYS n 1 101 VAL n 1 102 ILE n 1 103 GLN n 1 104 ILE n 1 105 ASN n 1 106 GLY n 1 107 SER n 1 108 ALA n 1 109 GLY n 1 110 ASP n 1 111 TYR n 1 112 LEU n 1 113 ASP n 1 114 SER n 1 115 LEU n 1 116 ASP n 1 117 ILE n 1 118 TYR n 1 119 TYR n 1 120 GLU n 1 121 GLN n 1 122 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Griffithsia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Griffithsia _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35158 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Nicotiana benthamiana' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4100 _entity_src_gen.host_org_genus Nicotiana _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRFIN_GRISQ _struct_ref.pdbx_db_accession P84801 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGR RFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HYQ A 2 ? 122 ? P84801 1 ? 121 ? 1 121 2 1 2HYQ B 2 ? 122 ? P84801 1 ? 121 ? 1 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HYQ ACE A 1 ? UNP P84801 ? ? acetylation 0 1 2 2HYQ ACE B 1 ? UNP P84801 ? ? acetylation 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HYQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;1.8M magnesium sulfate, 0.1M MES, 1:10 ratio of griffithsin monomers to mannose, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2006-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2HYQ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 50.00 _reflns.number_all 15194 _reflns.number_obs 15194 _reflns.percent_possible_obs 90.4 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 45.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HYQ _refine.ls_number_reflns_obs 14415 _refine.ls_number_reflns_all 15194 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 90.30 _refine.ls_R_factor_obs 0.17832 _refine.ls_R_factor_all 0.17832 _refine.ls_R_factor_R_work 0.17464 _refine.ls_R_factor_R_free 0.24255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 774 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 46.334 _refine.aniso_B[1][1] -0.18 _refine.aniso_B[2][2] 0.15 _refine.aniso_B[3][3] -0.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.09 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2GUC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.216 _refine.pdbx_overall_ESU_R_Free 0.194 _refine.overall_SU_ML 0.149 _refine.overall_SU_B 10.512 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1798 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 153 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 2072 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 2009 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.973 1.843 ? 2725 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.874 5.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.002 23.488 ? 86 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.373 15.000 ? 278 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.629 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.136 0.200 ? 314 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1459 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.226 0.200 ? 754 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.328 0.200 ? 1362 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.184 0.200 ? 144 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.201 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.165 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.155 1.500 ? 1207 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.806 2.000 ? 1868 'X-RAY DIFFRACTION' ? r_scbond_it 3.354 3.000 ? 894 'X-RAY DIFFRACTION' ? r_scangle_it 5.091 4.500 ? 857 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 485 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 41.17 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HYQ _struct.title 'Crystal structure of a complex of griffithsin with 6alpha-mannobiose' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HYQ _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'griffithsin, lectins, domain swapping, mannose binding, HIV, SARS, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B SER 2 N ? ? B ACE 0 B SER 1 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale3 covale both ? C MAN . O6 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale4 covale both ? D MAN . O6 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 2 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale5 covale both ? E MAN . O6 ? ? ? 1_555 E MAN . C1 ? ? E MAN 1 E MAN 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale6 covale both ? F MAN . O6 ? ? ? 1_555 F MAN . C1 ? ? F MAN 1 F MAN 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale7 covale both ? G MAN . O6 ? ? ? 1_555 G MAN . C1 ? ? G MAN 1 G MAN 2 1_555 ? ? ? ? ? ? ? 1.381 ? ? covale8 covale both ? H MAN . O6 ? ? ? 1_555 H MAN . C1 ? ? H MAN 1 H MAN 2 1_555 ? ? ? ? ? ? ? 1.415 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 84 A . ? GLY 83 A PRO 85 A ? PRO 84 A 1 0.66 2 GLY 84 B . ? GLY 83 B PRO 85 B ? PRO 84 B 1 2.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 4 ? G ? 4 ? H ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 3 ? GLY A 9 ? LEU A 2 GLY A 8 A 2 LEU B 112 ? GLN B 121 ? LEU B 111 GLN B 120 A 3 VAL B 99 ? ALA B 108 ? VAL B 98 ALA B 107 A 4 SER A 14 ? PHE A 16 ? SER A 13 PHE A 15 B 1 VAL A 38 ? GLY A 41 ? VAL A 37 GLY A 40 B 2 LEU A 30 ? ILE A 35 ? LEU A 29 ILE A 34 B 3 SER A 21 ? SER A 26 ? SER A 20 SER A 25 B 4 ASN A 46 ? LEU A 47 ? ASN A 45 LEU A 46 C 1 VAL A 38 ? GLY A 41 ? VAL A 37 GLY A 40 C 2 LEU A 30 ? ILE A 35 ? LEU A 29 ILE A 34 C 3 SER A 21 ? SER A 26 ? SER A 20 SER A 25 C 4 PHE A 51 ? THR A 52 ? PHE A 50 THR A 51 D 1 ARG A 82 ? GLY A 87 ? ARG A 81 GLY A 86 D 2 ILE A 70 ? THR A 77 ? ILE A 69 THR A 76 D 3 ILE A 59 ? SER A 66 ? ILE A 58 SER A 65 D 4 SER A 92 ? SER A 97 ? SER A 91 SER A 96 E 1 SER B 2 ? GLY B 9 ? SER B 1 GLY B 8 E 2 LEU A 112 ? GLN A 121 ? LEU A 111 GLN A 120 E 3 VAL A 99 ? ALA A 108 ? VAL A 98 ALA A 107 E 4 SER B 14 ? PHE B 16 ? SER B 13 PHE B 15 F 1 VAL B 38 ? GLY B 41 ? VAL B 37 GLY B 40 F 2 LEU B 30 ? ILE B 35 ? LEU B 29 ILE B 34 F 3 SER B 21 ? SER B 26 ? SER B 20 SER B 25 F 4 ASN B 46 ? LEU B 47 ? ASN B 45 LEU B 46 G 1 VAL B 38 ? GLY B 41 ? VAL B 37 GLY B 40 G 2 LEU B 30 ? ILE B 35 ? LEU B 29 ILE B 34 G 3 SER B 21 ? SER B 26 ? SER B 20 SER B 25 G 4 PHE B 51 ? THR B 52 ? PHE B 50 THR B 51 H 1 ARG B 82 ? GLY B 87 ? ARG B 81 GLY B 86 H 2 ILE B 70 ? THR B 77 ? ILE B 69 THR B 76 H 3 ILE B 59 ? SER B 66 ? ILE B 58 SER B 65 H 4 SER B 92 ? SER B 97 ? SER B 91 SER B 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 8 ? N PHE A 7 O LEU B 115 ? O LEU B 114 A 2 3 O TYR B 118 ? O TYR B 117 N ILE B 102 ? N ILE B 101 A 3 4 O GLY B 106 ? O GLY B 105 N PHE A 16 ? N PHE A 15 B 1 2 O HIS A 40 ? O HIS A 39 N ILE A 33 ? N ILE A 32 B 2 3 O ILE A 34 ? O ILE A 33 N ALA A 23 ? N ALA A 22 B 3 4 N SER A 26 ? N SER A 25 O ASN A 46 ? O ASN A 45 C 1 2 O HIS A 40 ? O HIS A 39 N ILE A 33 ? N ILE A 32 C 2 3 O ILE A 34 ? O ILE A 33 N ALA A 23 ? N ALA A 22 C 3 4 N ILE A 22 ? N ILE A 21 O PHE A 51 ? O PHE A 50 D 1 2 O PHE A 83 ? O PHE A 82 N PHE A 75 ? N PHE A 74 D 2 3 O SER A 74 ? O SER A 73 N THR A 63 ? N THR A 62 D 3 4 N MET A 62 ? N MET A 61 O LEU A 96 ? O LEU A 95 E 1 2 O THR B 4 ? O THR B 3 N TYR A 119 ? N TYR A 118 E 2 3 O ASP A 116 ? O ASP A 115 N ASN A 105 ? N ASN A 104 E 3 4 N GLY A 106 ? N GLY A 105 O PHE B 16 ? O PHE B 15 F 1 2 O VAL B 38 ? O VAL B 37 N ILE B 35 ? N ILE B 34 F 2 3 O ILE B 34 ? O ILE B 33 N ALA B 23 ? N ALA B 22 F 3 4 N SER B 26 ? N SER B 25 O ASN B 46 ? O ASN B 45 G 1 2 O VAL B 38 ? O VAL B 37 N ILE B 35 ? N ILE B 34 G 2 3 O ILE B 34 ? O ILE B 33 N ALA B 23 ? N ALA B 22 G 3 4 N ILE B 22 ? N ILE B 21 O PHE B 51 ? O PHE B 50 H 1 2 O PHE B 83 ? O PHE B 82 N PHE B 75 ? N PHE B 74 H 2 3 O GLU B 76 ? O GLU B 75 N ASN B 61 ? N ASN B 60 H 3 4 N MET B 62 ? N MET B 61 O LEU B 96 ? O LEU B 95 # _database_PDB_matrix.entry_id 2HYQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HYQ _atom_sites.fract_transf_matrix[1][1] 0.007175 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002682 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029214 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019372 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 HIS 5 4 4 HIS HIS A . n A 1 6 ARG 6 5 5 ARG ARG A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 GLY 9 8 8 GLY GLY A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 ILE 35 34 34 ILE ILE A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 HIS 39 38 38 HIS HIS A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 PHE 51 50 50 PHE PHE A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 PHE 53 52 52 PHE PHE A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 TYR 58 57 57 TYR TYR A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 MET 62 61 61 MET MET A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 TYR 69 68 68 TYR TYR A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 ASN 78 77 77 ASN ASN A . n A 1 79 MET 79 78 78 MET MET A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 ARG 81 80 80 ARG ARG A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 GLN 103 102 102 GLN GLN A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 ASN 105 104 104 ASN ASN A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 TYR 118 117 117 TYR TYR A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 TYR 122 121 121 TYR TYR A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 SER 2 1 1 SER SER B . n B 1 3 LEU 3 2 2 LEU LEU B . n B 1 4 THR 4 3 3 THR THR B . n B 1 5 HIS 5 4 4 HIS HIS B . n B 1 6 ARG 6 5 5 ARG ARG B . n B 1 7 LYS 7 6 6 LYS LYS B . n B 1 8 PHE 8 7 7 PHE PHE B . n B 1 9 GLY 9 8 8 GLY GLY B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 SER 11 10 10 SER SER B . n B 1 12 GLY 12 11 11 GLY GLY B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 PHE 16 15 15 PHE PHE B . n B 1 17 SER 17 16 16 SER SER B . n B 1 18 GLY 18 17 17 GLY GLY B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 SER 20 19 19 SER SER B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 ILE 22 21 21 ILE ILE B . n B 1 23 ALA 23 22 22 ALA ALA B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 ARG 25 24 24 ARG ARG B . n B 1 26 SER 26 25 25 SER SER B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 SER 28 27 27 SER SER B . n B 1 29 TYR 29 28 28 TYR TYR B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 ASP 31 30 30 ASP ASP B . n B 1 32 ALA 32 31 31 ALA ALA B . n B 1 33 ILE 33 32 32 ILE ILE B . n B 1 34 ILE 34 33 33 ILE ILE B . n B 1 35 ILE 35 34 34 ILE ILE B . n B 1 36 ASP 36 35 35 ASP ASP B . n B 1 37 GLY 37 36 36 GLY GLY B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 HIS 39 38 38 HIS HIS B . n B 1 40 HIS 40 39 39 HIS HIS B . n B 1 41 GLY 41 40 40 GLY GLY B . n B 1 42 GLY 42 41 41 GLY GLY B . n B 1 43 SER 43 42 42 SER SER B . n B 1 44 GLY 44 43 43 GLY GLY B . n B 1 45 GLY 45 44 44 GLY GLY B . n B 1 46 ASN 46 45 45 ASN ASN B . n B 1 47 LEU 47 46 46 LEU LEU B . n B 1 48 SER 48 47 47 SER SER B . n B 1 49 PRO 49 48 48 PRO PRO B . n B 1 50 THR 50 49 49 THR THR B . n B 1 51 PHE 51 50 50 PHE PHE B . n B 1 52 THR 52 51 51 THR THR B . n B 1 53 PHE 53 52 52 PHE PHE B . n B 1 54 GLY 54 53 53 GLY GLY B . n B 1 55 SER 55 54 54 SER SER B . n B 1 56 GLY 56 55 55 GLY GLY B . n B 1 57 GLU 57 56 56 GLU GLU B . n B 1 58 TYR 58 57 57 TYR TYR B . n B 1 59 ILE 59 58 58 ILE ILE B . n B 1 60 SER 60 59 59 SER SER B . n B 1 61 ASN 61 60 60 ASN ASN B . n B 1 62 MET 62 61 61 MET MET B . n B 1 63 THR 63 62 62 THR THR B . n B 1 64 ILE 64 63 63 ILE ILE B . n B 1 65 ARG 65 64 64 ARG ARG B . n B 1 66 SER 66 65 65 SER SER B . n B 1 67 GLY 67 66 66 GLY GLY B . n B 1 68 ASP 68 67 67 ASP ASP B . n B 1 69 TYR 69 68 68 TYR TYR B . n B 1 70 ILE 70 69 69 ILE ILE B . n B 1 71 ASP 71 70 70 ASP ASP B . n B 1 72 ASN 72 71 71 ASN ASN B . n B 1 73 ILE 73 72 72 ILE ILE B . n B 1 74 SER 74 73 73 SER SER B . n B 1 75 PHE 75 74 74 PHE PHE B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 THR 77 76 76 THR THR B . n B 1 78 ASN 78 77 77 ASN ASN B . n B 1 79 MET 79 78 78 MET MET B . n B 1 80 GLY 80 79 79 GLY GLY B . n B 1 81 ARG 81 80 80 ARG ARG B . n B 1 82 ARG 82 81 81 ARG ARG B . n B 1 83 PHE 83 82 82 PHE PHE B . n B 1 84 GLY 84 83 83 GLY GLY B . n B 1 85 PRO 85 84 84 PRO PRO B . n B 1 86 TYR 86 85 85 TYR TYR B . n B 1 87 GLY 87 86 86 GLY GLY B . n B 1 88 GLY 88 87 87 GLY GLY B . n B 1 89 SER 89 88 88 SER SER B . n B 1 90 GLY 90 89 89 GLY GLY B . n B 1 91 GLY 91 90 90 GLY GLY B . n B 1 92 SER 92 91 91 SER SER B . n B 1 93 ALA 93 92 92 ALA ALA B . n B 1 94 ASN 94 93 93 ASN ASN B . n B 1 95 THR 95 94 94 THR THR B . n B 1 96 LEU 96 95 95 LEU LEU B . n B 1 97 SER 97 96 96 SER SER B . n B 1 98 ASN 98 97 97 ASN ASN B . n B 1 99 VAL 99 98 98 VAL VAL B . n B 1 100 LYS 100 99 99 LYS LYS B . n B 1 101 VAL 101 100 100 VAL VAL B . n B 1 102 ILE 102 101 101 ILE ILE B . n B 1 103 GLN 103 102 102 GLN GLN B . n B 1 104 ILE 104 103 103 ILE ILE B . n B 1 105 ASN 105 104 104 ASN ASN B . n B 1 106 GLY 106 105 105 GLY GLY B . n B 1 107 SER 107 106 106 SER SER B . n B 1 108 ALA 108 107 107 ALA ALA B . n B 1 109 GLY 109 108 108 GLY GLY B . n B 1 110 ASP 110 109 109 ASP ASP B . n B 1 111 TYR 111 110 110 TYR TYR B . n B 1 112 LEU 112 111 111 LEU LEU B . n B 1 113 ASP 113 112 112 ASP ASP B . n B 1 114 SER 114 113 113 SER SER B . n B 1 115 LEU 115 114 114 LEU LEU B . n B 1 116 ASP 116 115 115 ASP ASP B . n B 1 117 ILE 117 116 116 ILE ILE B . n B 1 118 TYR 118 117 117 TYR TYR B . n B 1 119 TYR 119 118 118 TYR TYR B . n B 1 120 GLU 120 119 119 GLU GLU B . n B 1 121 GLN 121 120 120 GLN GLN B . n B 1 122 TYR 122 121 121 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SO4 1 201 201 SO4 SO4 A . J 3 SO4 1 202 202 SO4 SO4 B . K 3 SO4 1 203 203 SO4 SO4 B . L 4 HOH 1 202 1 HOH HOH A . L 4 HOH 2 203 3 HOH HOH A . L 4 HOH 3 204 4 HOH HOH A . L 4 HOH 4 205 13 HOH HOH A . L 4 HOH 5 206 14 HOH HOH A . L 4 HOH 6 207 19 HOH HOH A . L 4 HOH 7 208 20 HOH HOH A . L 4 HOH 8 209 23 HOH HOH A . L 4 HOH 9 210 24 HOH HOH A . L 4 HOH 10 211 26 HOH HOH A . L 4 HOH 11 212 28 HOH HOH A . L 4 HOH 12 213 31 HOH HOH A . L 4 HOH 13 214 32 HOH HOH A . L 4 HOH 14 215 33 HOH HOH A . L 4 HOH 15 216 35 HOH HOH A . L 4 HOH 16 217 37 HOH HOH A . L 4 HOH 17 218 38 HOH HOH A . L 4 HOH 18 219 39 HOH HOH A . L 4 HOH 19 220 40 HOH HOH A . L 4 HOH 20 221 41 HOH HOH A . L 4 HOH 21 222 43 HOH HOH A . L 4 HOH 22 223 45 HOH HOH A . L 4 HOH 23 224 48 HOH HOH A . L 4 HOH 24 225 49 HOH HOH A . L 4 HOH 25 226 50 HOH HOH A . L 4 HOH 26 227 51 HOH HOH A . L 4 HOH 27 228 53 HOH HOH A . L 4 HOH 28 229 56 HOH HOH A . L 4 HOH 29 230 57 HOH HOH A . L 4 HOH 30 231 60 HOH HOH A . L 4 HOH 31 232 63 HOH HOH A . L 4 HOH 32 233 67 HOH HOH A . L 4 HOH 33 234 68 HOH HOH A . L 4 HOH 34 235 72 HOH HOH A . L 4 HOH 35 236 76 HOH HOH A . L 4 HOH 36 237 77 HOH HOH A . L 4 HOH 37 238 78 HOH HOH A . L 4 HOH 38 239 79 HOH HOH A . L 4 HOH 39 240 80 HOH HOH A . L 4 HOH 40 241 81 HOH HOH A . L 4 HOH 41 242 89 HOH HOH A . L 4 HOH 42 243 91 HOH HOH A . L 4 HOH 43 244 93 HOH HOH A . L 4 HOH 44 245 94 HOH HOH A . L 4 HOH 45 246 95 HOH HOH A . L 4 HOH 46 247 96 HOH HOH A . L 4 HOH 47 248 98 HOH HOH A . L 4 HOH 48 249 101 HOH HOH A . L 4 HOH 49 250 102 HOH HOH A . L 4 HOH 50 251 103 HOH HOH A . L 4 HOH 51 252 104 HOH HOH A . L 4 HOH 52 253 105 HOH HOH A . L 4 HOH 53 254 106 HOH HOH A . L 4 HOH 54 255 111 HOH HOH A . L 4 HOH 55 256 112 HOH HOH A . L 4 HOH 56 257 113 HOH HOH A . L 4 HOH 57 258 114 HOH HOH A . L 4 HOH 58 259 116 HOH HOH A . L 4 HOH 59 260 120 HOH HOH A . L 4 HOH 60 261 121 HOH HOH A . M 4 HOH 1 204 2 HOH HOH B . M 4 HOH 2 205 5 HOH HOH B . M 4 HOH 3 206 6 HOH HOH B . M 4 HOH 4 207 7 HOH HOH B . M 4 HOH 5 208 8 HOH HOH B . M 4 HOH 6 209 9 HOH HOH B . M 4 HOH 7 210 10 HOH HOH B . M 4 HOH 8 211 11 HOH HOH B . M 4 HOH 9 212 12 HOH HOH B . M 4 HOH 10 213 15 HOH HOH B . M 4 HOH 11 214 16 HOH HOH B . M 4 HOH 12 215 17 HOH HOH B . M 4 HOH 13 216 18 HOH HOH B . M 4 HOH 14 217 21 HOH HOH B . M 4 HOH 15 218 22 HOH HOH B . M 4 HOH 16 219 25 HOH HOH B . M 4 HOH 17 220 27 HOH HOH B . M 4 HOH 18 221 29 HOH HOH B . M 4 HOH 19 222 30 HOH HOH B . M 4 HOH 20 223 34 HOH HOH B . M 4 HOH 21 224 36 HOH HOH B . M 4 HOH 22 225 42 HOH HOH B . M 4 HOH 23 226 44 HOH HOH B . M 4 HOH 24 227 46 HOH HOH B . M 4 HOH 25 228 47 HOH HOH B . M 4 HOH 26 229 52 HOH HOH B . M 4 HOH 27 230 54 HOH HOH B . M 4 HOH 28 231 55 HOH HOH B . M 4 HOH 29 232 58 HOH HOH B . M 4 HOH 30 233 59 HOH HOH B . M 4 HOH 31 234 61 HOH HOH B . M 4 HOH 32 235 62 HOH HOH B . M 4 HOH 33 236 64 HOH HOH B . M 4 HOH 34 237 65 HOH HOH B . M 4 HOH 35 238 66 HOH HOH B . M 4 HOH 36 239 69 HOH HOH B . M 4 HOH 37 240 70 HOH HOH B . M 4 HOH 38 241 71 HOH HOH B . M 4 HOH 39 242 73 HOH HOH B . M 4 HOH 40 243 74 HOH HOH B . M 4 HOH 41 244 75 HOH HOH B . M 4 HOH 42 245 82 HOH HOH B . M 4 HOH 43 246 83 HOH HOH B . M 4 HOH 44 247 84 HOH HOH B . M 4 HOH 45 248 85 HOH HOH B . M 4 HOH 46 249 86 HOH HOH B . M 4 HOH 47 250 87 HOH HOH B . M 4 HOH 48 251 88 HOH HOH B . M 4 HOH 49 252 90 HOH HOH B . M 4 HOH 50 253 92 HOH HOH B . M 4 HOH 51 254 97 HOH HOH B . M 4 HOH 52 255 99 HOH HOH B . M 4 HOH 53 256 100 HOH HOH B . M 4 HOH 54 257 107 HOH HOH B . M 4 HOH 55 258 108 HOH HOH B . M 4 HOH 56 259 109 HOH HOH B . M 4 HOH 57 260 110 HOH HOH B . M 4 HOH 58 261 115 HOH HOH B . M 4 HOH 59 262 117 HOH HOH B . M 4 HOH 60 263 118 HOH HOH B . M 4 HOH 61 264 119 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900118 _pdbx_molecule_features.name 6alpha-alpha-mannobiose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900118 C 2 PRD_900118 D 3 PRD_900118 E 4 PRD_900118 F 5 PRD_900118 G 6 PRD_900118 H # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8350 ? 1 MORE -22 ? 1 'SSA (A^2)' 10560 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' entity_name_com 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_molecule_features 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' pdbx_struct_assembly_gen 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_ref_seq_dif 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen 21 6 'Structure model' chem_comp 22 6 'Structure model' chem_comp_atom 23 6 'Structure model' chem_comp_bond 24 6 'Structure model' database_2 25 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_atom_site.B_iso_or_equiv' 3 5 'Structure model' '_atom_site.Cartn_x' 4 5 'Structure model' '_atom_site.Cartn_y' 5 5 'Structure model' '_atom_site.Cartn_z' 6 5 'Structure model' '_atom_site.auth_asym_id' 7 5 'Structure model' '_atom_site.auth_atom_id' 8 5 'Structure model' '_atom_site.auth_comp_id' 9 5 'Structure model' '_atom_site.auth_seq_id' 10 5 'Structure model' '_atom_site.label_asym_id' 11 5 'Structure model' '_atom_site.label_atom_id' 12 5 'Structure model' '_atom_site.label_comp_id' 13 5 'Structure model' '_atom_site.label_entity_id' 14 5 'Structure model' '_atom_site.type_symbol' 15 5 'Structure model' '_chem_comp.name' 16 5 'Structure model' '_chem_comp.type' 17 5 'Structure model' '_entity.formula_weight' 18 5 'Structure model' '_entity.pdbx_description' 19 5 'Structure model' '_entity.pdbx_number_of_molecules' 20 5 'Structure model' '_entity.type' 21 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_ref_seq_dif.details' 39 6 'Structure model' '_chem_comp.pdbx_synonyms' 40 6 'Structure model' '_database_2.pdbx_DOI' 41 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -32.8832 -3.5351 13.0498 -0.0904 -0.1180 -0.0838 0.0042 -0.0174 0.0283 2.9980 1.6753 1.5114 0.8019 -0.5397 -0.1240 0.0134 -0.1778 -0.2195 0.1456 -0.0172 -0.2076 -0.0769 0.1595 0.0038 'X-RAY DIFFRACTION' 2 ? refined -51.8738 2.8764 10.8239 -0.1096 -0.0920 -0.0784 0.0048 0.0076 0.0136 2.6182 1.0926 1.2251 -0.0806 0.3811 -0.3764 0.0429 -0.1042 0.2016 -0.0140 -0.0772 0.1528 -0.0561 -0.0984 0.0342 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 2 A 121 A 122 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 B 2 B 121 B 122 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' CCD ? 2 HKL-2000 'data reduction' . ? 3 DENZO 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SCALEPACK 'data scaling' . ? 6 PHASER phasing . ? 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 60 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 238 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.01 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 80 ? B CZ A ARG 80 ? B NH1 A ARG 80 ? B 123.71 120.30 3.41 0.50 N 2 1 NE A ARG 80 ? B CZ A ARG 80 ? B NH2 A ARG 80 ? B 116.31 120.30 -3.99 0.50 N 3 1 CB B ASP 115 ? ? CG B ASP 115 ? ? OD1 B ASP 115 ? ? 111.54 118.30 -6.76 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 97 ? ? 60.71 63.29 2 1 ASN A 104 ? ? -108.43 -169.47 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 GLN N N N N 81 GLN CA C N S 82 GLN C C N N 83 GLN O O N N 84 GLN CB C N N 85 GLN CG C N N 86 GLN CD C N N 87 GLN OE1 O N N 88 GLN NE2 N N N 89 GLN OXT O N N 90 GLN H H N N 91 GLN H2 H N N 92 GLN HA H N N 93 GLN HB2 H N N 94 GLN HB3 H N N 95 GLN HG2 H N N 96 GLN HG3 H N N 97 GLN HE21 H N N 98 GLN HE22 H N N 99 GLN HXT H N N 100 GLU N N N N 101 GLU CA C N S 102 GLU C C N N 103 GLU O O N N 104 GLU CB C N N 105 GLU CG C N N 106 GLU CD C N N 107 GLU OE1 O N N 108 GLU OE2 O N N 109 GLU OXT O N N 110 GLU H H N N 111 GLU H2 H N N 112 GLU HA H N N 113 GLU HB2 H N N 114 GLU HB3 H N N 115 GLU HG2 H N N 116 GLU HG3 H N N 117 GLU HE2 H N N 118 GLU HXT H N N 119 GLY N N N N 120 GLY CA C N N 121 GLY C C N N 122 GLY O O N N 123 GLY OXT O N N 124 GLY H H N N 125 GLY H2 H N N 126 GLY HA2 H N N 127 GLY HA3 H N N 128 GLY HXT H N N 129 HIS N N N N 130 HIS CA C N S 131 HIS C C N N 132 HIS O O N N 133 HIS CB C N N 134 HIS CG C Y N 135 HIS ND1 N Y N 136 HIS CD2 C Y N 137 HIS CE1 C Y N 138 HIS NE2 N Y N 139 HIS OXT O N N 140 HIS H H N N 141 HIS H2 H N N 142 HIS HA H N N 143 HIS HB2 H N N 144 HIS HB3 H N N 145 HIS HD1 H N N 146 HIS HD2 H N N 147 HIS HE1 H N N 148 HIS HE2 H N N 149 HIS HXT H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 ILE N N N N 154 ILE CA C N S 155 ILE C C N N 156 ILE O O N N 157 ILE CB C N S 158 ILE CG1 C N N 159 ILE CG2 C N N 160 ILE CD1 C N N 161 ILE OXT O N N 162 ILE H H N N 163 ILE H2 H N N 164 ILE HA H N N 165 ILE HB H N N 166 ILE HG12 H N N 167 ILE HG13 H N N 168 ILE HG21 H N N 169 ILE HG22 H N N 170 ILE HG23 H N N 171 ILE HD11 H N N 172 ILE HD12 H N N 173 ILE HD13 H N N 174 ILE HXT H N N 175 LEU N N N N 176 LEU CA C N S 177 LEU C C N N 178 LEU O O N N 179 LEU CB C N N 180 LEU CG C N N 181 LEU CD1 C N N 182 LEU CD2 C N N 183 LEU OXT O N N 184 LEU H H N N 185 LEU H2 H N N 186 LEU HA H N N 187 LEU HB2 H N N 188 LEU HB3 H N N 189 LEU HG H N N 190 LEU HD11 H N N 191 LEU HD12 H N N 192 LEU HD13 H N N 193 LEU HD21 H N N 194 LEU HD22 H N N 195 LEU HD23 H N N 196 LEU HXT H N N 197 LYS N N N N 198 LYS CA C N S 199 LYS C C N N 200 LYS O O N N 201 LYS CB C N N 202 LYS CG C N N 203 LYS CD C N N 204 LYS CE C N N 205 LYS NZ N N N 206 LYS OXT O N N 207 LYS H H N N 208 LYS H2 H N N 209 LYS HA H N N 210 LYS HB2 H N N 211 LYS HB3 H N N 212 LYS HG2 H N N 213 LYS HG3 H N N 214 LYS HD2 H N N 215 LYS HD3 H N N 216 LYS HE2 H N N 217 LYS HE3 H N N 218 LYS HZ1 H N N 219 LYS HZ2 H N N 220 LYS HZ3 H N N 221 LYS HXT H N N 222 MAN C1 C N S 223 MAN C2 C N S 224 MAN C3 C N S 225 MAN C4 C N S 226 MAN C5 C N R 227 MAN C6 C N N 228 MAN O1 O N N 229 MAN O2 O N N 230 MAN O3 O N N 231 MAN O4 O N N 232 MAN O5 O N N 233 MAN O6 O N N 234 MAN H1 H N N 235 MAN H2 H N N 236 MAN H3 H N N 237 MAN H4 H N N 238 MAN H5 H N N 239 MAN H61 H N N 240 MAN H62 H N N 241 MAN HO1 H N N 242 MAN HO2 H N N 243 MAN HO3 H N N 244 MAN HO4 H N N 245 MAN HO6 H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 SO4 S S N N 321 SO4 O1 O N N 322 SO4 O2 O N N 323 SO4 O3 O N N 324 SO4 O4 O N N 325 THR N N N N 326 THR CA C N S 327 THR C C N N 328 THR O O N N 329 THR CB C N R 330 THR OG1 O N N 331 THR CG2 C N N 332 THR OXT O N N 333 THR H H N N 334 THR H2 H N N 335 THR HA H N N 336 THR HB H N N 337 THR HG1 H N N 338 THR HG21 H N N 339 THR HG22 H N N 340 THR HG23 H N N 341 THR HXT H N N 342 TYR N N N N 343 TYR CA C N S 344 TYR C C N N 345 TYR O O N N 346 TYR CB C N N 347 TYR CG C Y N 348 TYR CD1 C Y N 349 TYR CD2 C Y N 350 TYR CE1 C Y N 351 TYR CE2 C Y N 352 TYR CZ C Y N 353 TYR OH O N N 354 TYR OXT O N N 355 TYR H H N N 356 TYR H2 H N N 357 TYR HA H N N 358 TYR HB2 H N N 359 TYR HB3 H N N 360 TYR HD1 H N N 361 TYR HD2 H N N 362 TYR HE1 H N N 363 TYR HE2 H N N 364 TYR HH H N N 365 TYR HXT H N N 366 VAL N N N N 367 VAL CA C N S 368 VAL C C N N 369 VAL O O N N 370 VAL CB C N N 371 VAL CG1 C N N 372 VAL CG2 C N N 373 VAL OXT O N N 374 VAL H H N N 375 VAL H2 H N N 376 VAL HA H N N 377 VAL HB H N N 378 VAL HG11 H N N 379 VAL HG12 H N N 380 VAL HG13 H N N 381 VAL HG21 H N N 382 VAL HG22 H N N 383 VAL HG23 H N N 384 VAL HXT H N N 385 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 HIS N CA sing N N 122 HIS N H sing N N 123 HIS N H2 sing N N 124 HIS CA C sing N N 125 HIS CA CB sing N N 126 HIS CA HA sing N N 127 HIS C O doub N N 128 HIS C OXT sing N N 129 HIS CB CG sing N N 130 HIS CB HB2 sing N N 131 HIS CB HB3 sing N N 132 HIS CG ND1 sing Y N 133 HIS CG CD2 doub Y N 134 HIS ND1 CE1 doub Y N 135 HIS ND1 HD1 sing N N 136 HIS CD2 NE2 sing Y N 137 HIS CD2 HD2 sing N N 138 HIS CE1 NE2 sing Y N 139 HIS CE1 HE1 sing N N 140 HIS NE2 HE2 sing N N 141 HIS OXT HXT sing N N 142 HOH O H1 sing N N 143 HOH O H2 sing N N 144 ILE N CA sing N N 145 ILE N H sing N N 146 ILE N H2 sing N N 147 ILE CA C sing N N 148 ILE CA CB sing N N 149 ILE CA HA sing N N 150 ILE C O doub N N 151 ILE C OXT sing N N 152 ILE CB CG1 sing N N 153 ILE CB CG2 sing N N 154 ILE CB HB sing N N 155 ILE CG1 CD1 sing N N 156 ILE CG1 HG12 sing N N 157 ILE CG1 HG13 sing N N 158 ILE CG2 HG21 sing N N 159 ILE CG2 HG22 sing N N 160 ILE CG2 HG23 sing N N 161 ILE CD1 HD11 sing N N 162 ILE CD1 HD12 sing N N 163 ILE CD1 HD13 sing N N 164 ILE OXT HXT sing N N 165 LEU N CA sing N N 166 LEU N H sing N N 167 LEU N H2 sing N N 168 LEU CA C sing N N 169 LEU CA CB sing N N 170 LEU CA HA sing N N 171 LEU C O doub N N 172 LEU C OXT sing N N 173 LEU CB CG sing N N 174 LEU CB HB2 sing N N 175 LEU CB HB3 sing N N 176 LEU CG CD1 sing N N 177 LEU CG CD2 sing N N 178 LEU CG HG sing N N 179 LEU CD1 HD11 sing N N 180 LEU CD1 HD12 sing N N 181 LEU CD1 HD13 sing N N 182 LEU CD2 HD21 sing N N 183 LEU CD2 HD22 sing N N 184 LEU CD2 HD23 sing N N 185 LEU OXT HXT sing N N 186 LYS N CA sing N N 187 LYS N H sing N N 188 LYS N H2 sing N N 189 LYS CA C sing N N 190 LYS CA CB sing N N 191 LYS CA HA sing N N 192 LYS C O doub N N 193 LYS C OXT sing N N 194 LYS CB CG sing N N 195 LYS CB HB2 sing N N 196 LYS CB HB3 sing N N 197 LYS CG CD sing N N 198 LYS CG HG2 sing N N 199 LYS CG HG3 sing N N 200 LYS CD CE sing N N 201 LYS CD HD2 sing N N 202 LYS CD HD3 sing N N 203 LYS CE NZ sing N N 204 LYS CE HE2 sing N N 205 LYS CE HE3 sing N N 206 LYS NZ HZ1 sing N N 207 LYS NZ HZ2 sing N N 208 LYS NZ HZ3 sing N N 209 LYS OXT HXT sing N N 210 MAN C1 C2 sing N N 211 MAN C1 O1 sing N N 212 MAN C1 O5 sing N N 213 MAN C1 H1 sing N N 214 MAN C2 C3 sing N N 215 MAN C2 O2 sing N N 216 MAN C2 H2 sing N N 217 MAN C3 C4 sing N N 218 MAN C3 O3 sing N N 219 MAN C3 H3 sing N N 220 MAN C4 C5 sing N N 221 MAN C4 O4 sing N N 222 MAN C4 H4 sing N N 223 MAN C5 C6 sing N N 224 MAN C5 O5 sing N N 225 MAN C5 H5 sing N N 226 MAN C6 O6 sing N N 227 MAN C6 H61 sing N N 228 MAN C6 H62 sing N N 229 MAN O1 HO1 sing N N 230 MAN O2 HO2 sing N N 231 MAN O3 HO3 sing N N 232 MAN O4 HO4 sing N N 233 MAN O6 HO6 sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 SO4 S O1 doub N N 307 SO4 S O2 doub N N 308 SO4 S O3 sing N N 309 SO4 S O4 sing N N 310 THR N CA sing N N 311 THR N H sing N N 312 THR N H2 sing N N 313 THR CA C sing N N 314 THR CA CB sing N N 315 THR CA HA sing N N 316 THR C O doub N N 317 THR C OXT sing N N 318 THR CB OG1 sing N N 319 THR CB CG2 sing N N 320 THR CB HB sing N N 321 THR OG1 HG1 sing N N 322 THR CG2 HG21 sing N N 323 THR CG2 HG22 sing N N 324 THR CG2 HG23 sing N N 325 THR OXT HXT sing N N 326 TYR N CA sing N N 327 TYR N H sing N N 328 TYR N H2 sing N N 329 TYR CA C sing N N 330 TYR CA CB sing N N 331 TYR CA HA sing N N 332 TYR C O doub N N 333 TYR C OXT sing N N 334 TYR CB CG sing N N 335 TYR CB HB2 sing N N 336 TYR CB HB3 sing N N 337 TYR CG CD1 doub Y N 338 TYR CG CD2 sing Y N 339 TYR CD1 CE1 sing Y N 340 TYR CD1 HD1 sing N N 341 TYR CD2 CE2 doub Y N 342 TYR CD2 HD2 sing N N 343 TYR CE1 CZ doub Y N 344 TYR CE1 HE1 sing N N 345 TYR CE2 CZ sing Y N 346 TYR CE2 HE2 sing N N 347 TYR CZ OH sing N N 348 TYR OH HH sing N N 349 TYR OXT HXT sing N N 350 VAL N CA sing N N 351 VAL N H sing N N 352 VAL N H2 sing N N 353 VAL CA C sing N N 354 VAL CA CB sing N N 355 VAL CA HA sing N N 356 VAL C O doub N N 357 VAL C OXT sing N N 358 VAL CB CG1 sing N N 359 VAL CB CG2 sing N N 360 VAL CB HB sing N N 361 VAL CG1 HG11 sing N N 362 VAL CG1 HG12 sing N N 363 VAL CG1 HG13 sing N N 364 VAL CG2 HG21 sing N N 365 VAL CG2 HG22 sing N N 366 VAL CG2 HG23 sing N N 367 VAL OXT HXT sing N N 368 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 MAN 1 C MAN 1 C MAN 11 n C 2 MAN 2 C MAN 2 C MAN 12 n D 2 MAN 1 D MAN 1 C MAN 21 n D 2 MAN 2 D MAN 2 C MAN 22 n E 2 MAN 1 E MAN 1 C MAN 31 n E 2 MAN 2 E MAN 2 C MAN 32 n F 2 MAN 1 F MAN 1 C MAN 41 n F 2 MAN 2 F MAN 2 C MAN 42 n G 2 MAN 1 G MAN 1 C MAN 51 n G 2 MAN 2 G MAN 2 C MAN 52 n H 2 MAN 1 H MAN 1 C MAN 61 n H 2 MAN 2 H MAN 2 C MAN 62 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-6DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a6-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(6+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GUC _pdbx_initial_refinement_model.details 'PDB ENTRY 2GUC' #