HEADER SUGAR BINDING PROTEIN 07-AUG-06 2HYQ TITLE CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH 6ALPHA-MANNOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRIFFITHSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GRFT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFITHSIA; SOURCE 3 ORGANISM_TAXID: 35158; SOURCE 4 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS GRIFFITHSIN, LECTINS, DOMAIN SWAPPING, MANNOSE BINDING, HIV, SARS, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.E.ZIOLKOWSKA,A.WLODAWER REVDAT 6 30-AUG-23 2HYQ 1 HETSYN REVDAT 5 29-JUL-20 2HYQ 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 18-OCT-17 2HYQ 1 REMARK REVDAT 3 13-JUL-11 2HYQ 1 VERSN REVDAT 2 24-FEB-09 2HYQ 1 VERSN REVDAT 1 24-APR-07 2HYQ 0 JRNL AUTH N.E.ZIOLKOWSKA,S.R.SHENOY,B.R.O'KEEFE,J.B.MCMAHON, JRNL AUTH 2 K.E.PALMER,R.A.DWEK,M.R.WORMALD,A.WLODAWER JRNL TITL CRYSTALLOGRAPHIC, THERMODYNAMIC, AND MOLECULAR MODELING JRNL TITL 2 STUDIES OF THE MODE OF BINDING OF OLIGOSACCHARIDES TO THE JRNL TITL 3 POTENT ANTIVIRAL PROTEIN GRIFFITHSIN. JRNL REF PROTEINS V. 67 661 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17340634 JRNL DOI 10.1002/PROT.21336 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 14415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2009 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2725 ; 1.973 ; 1.843 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 7.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;43.002 ;23.488 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;16.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1459 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 754 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1362 ; 0.328 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 1.155 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1868 ; 1.806 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 3.354 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 857 ; 5.091 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8832 -3.5351 13.0498 REMARK 3 T TENSOR REMARK 3 T11: -0.0904 T22: -0.1180 REMARK 3 T33: -0.0838 T12: 0.0042 REMARK 3 T13: -0.0174 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.9980 L22: 1.6753 REMARK 3 L33: 1.5114 L12: 0.8019 REMARK 3 L13: -0.5397 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.1778 S13: -0.2195 REMARK 3 S21: 0.1456 S22: -0.0172 S23: -0.2076 REMARK 3 S31: -0.0769 S32: 0.1595 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -51.8738 2.8764 10.8239 REMARK 3 T TENSOR REMARK 3 T11: -0.1096 T22: -0.0920 REMARK 3 T33: -0.0784 T12: 0.0048 REMARK 3 T13: 0.0076 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.6182 L22: 1.0926 REMARK 3 L33: 1.2251 L12: -0.0806 REMARK 3 L13: 0.3811 L23: -0.3764 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.1042 S13: 0.2016 REMARK 3 S21: -0.0140 S22: -0.0772 S23: 0.1528 REMARK 3 S31: -0.0561 S32: -0.0984 S33: 0.0342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M MAGNESIUM SULFATE, 0.1M MES, 1:10 REMARK 280 RATIO OF GRIFFITHSIN MONOMERS TO MANNOSE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.69000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.69000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 60 O HOH A 238 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 115 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 63.29 60.71 REMARK 500 ASN A 104 -169.47 -108.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GTY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED GRIFFITHSIN REMARK 900 RELATED ID: 2GUC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 1.78 REMARK 900 A RESOLUTION REMARK 900 RELATED ID: 2GUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 0.94 REMARK 900 A RESOLUTION REMARK 900 RELATED ID: 2GUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH N- REMARK 900 ACETYLGLUCOSAMINE REMARK 900 RELATED ID: 2GUX RELATED DB: PDB REMARK 900 SELENOMETHIONINE DERIVATIVE OF GRIFFITHSIN REMARK 900 RELATED ID: 2HYR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MALTOSE DBREF 2HYQ A 1 121 UNP P84801 GRFIN_GRISQ 1 121 DBREF 2HYQ B 1 121 UNP P84801 GRFIN_GRISQ 1 121 SEQADV 2HYQ ACE A 0 UNP P84801 ACETYLATION SEQADV 2HYQ ACE B 0 UNP P84801 ACETYLATION SEQRES 1 A 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 A 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 A 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 A 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 A 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 A 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 A 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 A 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 A 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 A 122 TYR TYR GLU GLN TYR SEQRES 1 B 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 B 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 B 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 B 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 B 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 B 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 B 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 B 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 B 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 B 122 TYR TYR GLU GLN TYR HET ACE A 0 3 HET ACE B 0 3 HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 12 HET MAN D 2 11 HET MAN E 1 12 HET MAN E 2 11 HET MAN F 1 12 HET MAN F 2 11 HET MAN G 1 12 HET MAN G 2 11 HET MAN H 1 12 HET MAN H 2 11 HET SO4 A 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM ACE ACETYL GROUP HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 MAN 12(C6 H12 O6) FORMUL 9 SO4 3(O4 S 2-) FORMUL 12 HOH *121(H2 O) SHEET 1 A 4 LEU A 2 GLY A 8 0 SHEET 2 A 4 LEU B 111 GLN B 120 -1 O LEU B 114 N PHE A 7 SHEET 3 A 4 VAL B 98 ALA B 107 -1 N ILE B 101 O TYR B 117 SHEET 4 A 4 SER A 13 PHE A 15 -1 N PHE A 15 O GLY B 105 SHEET 1 B 4 VAL A 37 GLY A 40 0 SHEET 2 B 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 B 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 B 4 ASN A 45 LEU A 46 -1 O ASN A 45 N SER A 25 SHEET 1 C 4 VAL A 37 GLY A 40 0 SHEET 2 C 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 C 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 C 4 PHE A 50 THR A 51 -1 O PHE A 50 N ILE A 21 SHEET 1 D 4 ARG A 81 GLY A 86 0 SHEET 2 D 4 ILE A 69 THR A 76 -1 N PHE A 74 O PHE A 82 SHEET 3 D 4 ILE A 58 SER A 65 -1 N THR A 62 O SER A 73 SHEET 4 D 4 SER A 91 SER A 96 -1 O LEU A 95 N MET A 61 SHEET 1 E 4 SER B 1 GLY B 8 0 SHEET 2 E 4 LEU A 111 GLN A 120 -1 N TYR A 118 O THR B 3 SHEET 3 E 4 VAL A 98 ALA A 107 -1 N ASN A 104 O ASP A 115 SHEET 4 E 4 SER B 13 PHE B 15 -1 O PHE B 15 N GLY A 105 SHEET 1 F 4 VAL B 37 GLY B 40 0 SHEET 2 F 4 LEU B 29 ILE B 34 -1 N ILE B 34 O VAL B 37 SHEET 3 F 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 F 4 ASN B 45 LEU B 46 -1 O ASN B 45 N SER B 25 SHEET 1 G 4 VAL B 37 GLY B 40 0 SHEET 2 G 4 LEU B 29 ILE B 34 -1 N ILE B 34 O VAL B 37 SHEET 3 G 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 G 4 PHE B 50 THR B 51 -1 O PHE B 50 N ILE B 21 SHEET 1 H 4 ARG B 81 GLY B 86 0 SHEET 2 H 4 ILE B 69 THR B 76 -1 N PHE B 74 O PHE B 82 SHEET 3 H 4 ILE B 58 SER B 65 -1 N ASN B 60 O GLU B 75 SHEET 4 H 4 SER B 91 SER B 96 -1 O LEU B 95 N MET B 61 LINK C ACE A 0 N SER A 1 1555 1555 1.31 LINK C ACE B 0 N SER B 1 1555 1555 1.31 LINK O6 MAN C 1 C1 MAN C 2 1555 1555 1.44 LINK O6 MAN D 1 C1 MAN D 2 1555 1555 1.43 LINK O6 MAN E 1 C1 MAN E 2 1555 1555 1.44 LINK O6 MAN F 1 C1 MAN F 2 1555 1555 1.44 LINK O6 MAN G 1 C1 MAN G 2 1555 1555 1.38 LINK O6 MAN H 1 C1 MAN H 2 1555 1555 1.42 CISPEP 1 GLY A 83 PRO A 84 0 0.66 CISPEP 2 GLY B 83 PRO B 84 0 2.07 CRYST1 139.380 34.230 55.110 90.00 110.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007175 0.000000 0.002682 0.00000 SCALE2 0.000000 0.029214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019372 0.00000 HETATM 1 C ACE A 0 -46.228 -5.533 25.948 1.00 57.49 C HETATM 2 O ACE A 0 -45.748 -6.552 25.465 1.00 59.38 O HETATM 3 CH3 ACE A 0 -45.464 -4.250 26.082 1.00 58.38 C