HEADER TRANSFERASE 14-AUG-06 2I1L TITLE CRYSTAL STRUCTURE OF THE C2 FORM OF FAD SYNTHETASE FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_0857; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21, PSJS1240 KEYWDS FAD SYNTHETASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, BERKELEY STRUCTURAL GENOMICS CENTER, BSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,D.H.SHIN,H.YOKOTA,R.KIM,S.-H.KIM,BERKELEY STRUCTURAL GENOMICS AUTHOR 2 CENTER (BSGC) REVDAT 4 15-NOV-23 2I1L 1 REMARK REVDAT 3 30-AUG-23 2I1L 1 SEQADV LINK REVDAT 2 24-FEB-09 2I1L 1 VERSN REVDAT 1 07-NOV-06 2I1L 0 JRNL AUTH W.WANG,D.H.SHIN,H.YOKOTA,R.KIM,S.-H.KIM JRNL TITL CRYSTAL STRUCTURE OF THE C2 FORM OF FAD SYNTHETASE FROM JRNL TITL 2 THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1211913.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 41883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2072 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5404 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 249 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.05000 REMARK 3 B22 (A**2) : -5.42000 REMARK 3 B33 (A**2) : -12.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 40.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED FOR REMARK 3 PHASING. REMARK 4 REMARK 4 2I1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51065 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1MRZ REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MM SODIUM CITRATE, 10% REMARK 280 POLYETHYLENE GLYCOL 4000 (PEG4K), 5% GLYCEROL, AND 10% PROPANOL, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.59350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.59350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 167 REMARK 465 LYS A 168 REMARK 465 ASP A 169 REMARK 465 ARG A 170 REMARK 465 GLU A 171 REMARK 465 PHE A 172 REMARK 465 GLY A 173 REMARK 465 ARG A 174 REMARK 465 LYS A 175 REMARK 465 LEU A 176 REMARK 465 GLY A 177 REMARK 465 ARG A 219 REMARK 465 PRO A 220 REMARK 465 THR A 221 REMARK 465 VAL A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 ALA A 225 REMARK 465 PHE A 260 REMARK 465 ASP A 261 REMARK 465 SER A 262 REMARK 465 ILE A 263 REMARK 465 LYS A 291 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 MSE B 301 REMARK 465 LYS B 468 REMARK 465 ASP B 469 REMARK 465 ARG B 470 REMARK 465 GLU B 471 REMARK 465 PHE B 472 REMARK 465 GLY B 473 REMARK 465 ARG B 474 REMARK 465 LYS B 475 REMARK 465 LEU B 476 REMARK 465 GLY B 477 REMARK 465 PHE B 478 REMARK 465 ARG B 519 REMARK 465 PRO B 520 REMARK 465 THR B 521 REMARK 465 VAL B 522 REMARK 465 GLY B 523 REMARK 465 ASP B 524 REMARK 465 ALA B 525 REMARK 465 ARG B 526 REMARK 465 GLU B 590 REMARK 465 LYS B 591 REMARK 465 GLU B 592 REMARK 465 GLY B 593 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 466 O TYR B 542 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 280 N MSE A 280 CA 0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 280 C - N - CA ANGL. DEV. = -17.3 DEGREES REMARK 500 ALA B 481 N - CA - CB ANGL. DEV. = 14.2 DEGREES REMARK 500 ALA B 481 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 65 41.47 -77.29 REMARK 500 TYR A 66 -27.69 -150.48 REMARK 500 ALA A 67 160.32 164.70 REMARK 500 ARG A 76 0.84 -61.57 REMARK 500 ILE A 77 -14.55 -141.99 REMARK 500 ARG A 100 -101.52 -21.44 REMARK 500 PHE A 104 -6.53 -162.74 REMARK 500 ASN A 111 -175.66 -173.53 REMARK 500 GLN A 131 -133.02 61.85 REMARK 500 PRO A 179 -137.84 23.34 REMARK 500 THR A 180 -165.19 -110.98 REMARK 500 ASN A 227 76.55 -154.72 REMARK 500 MSE A 254 -95.26 -89.01 REMARK 500 GLU A 265 51.59 -108.38 REMARK 500 LYS A 267 1.62 -56.00 REMARK 500 ASN A 279 -29.11 109.12 REMARK 500 VAL B 311 57.58 36.89 REMARK 500 SER B 339 -78.13 -35.56 REMARK 500 PHE B 349 126.07 -37.59 REMARK 500 ARG B 376 -10.72 108.01 REMARK 500 ASP B 401 68.29 39.18 REMARK 500 LYS B 406 147.90 -35.60 REMARK 500 ASN B 407 61.38 12.19 REMARK 500 ALA B 408 42.57 28.55 REMARK 500 SER B 409 45.97 -99.97 REMARK 500 ASN B 411 -173.09 175.65 REMARK 500 THR B 480 172.92 71.72 REMARK 500 GLU B 488 166.70 -41.64 REMARK 500 TYR B 542 -74.03 -29.53 REMARK 500 ASP B 561 58.97 -92.34 REMARK 500 SER B 562 154.47 155.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MRZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A FLAVIN BINDING PROTEIN FROM THERMOTOGA REMARK 900 MARITIMA, TM379 REMARK 900 RELATED ID: 1S4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FLAVIN BINDING TO FAD SYNTHETASE FROM REMARK 900 THERMOTOGA MARITINA REMARK 900 RELATED ID: 1T6X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP BOUND TM379 REMARK 900 RELATED ID: 1T6Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP, AMP, AND FMN BOUND TM379 REMARK 900 RELATED ID: 1T6Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOFLAVIN BOUND TM379 REMARK 900 RELATED ID: BSGCAIR30409 RELATED DB: TARGETDB DBREF 2I1L A 1 293 UNP Q9WZW1 Q9WZW1_THEMA 1 293 DBREF 2I1L B 301 593 UNP Q9WZW1 Q9WZW1_THEMA 1 293 SEQADV 2I1L MSE A 1 UNP Q9WZW1 MET 1 MODIFIED RESIDUE SEQADV 2I1L MSE A 22 UNP Q9WZW1 MET 22 MODIFIED RESIDUE SEQADV 2I1L MSE A 54 UNP Q9WZW1 MET 54 MODIFIED RESIDUE SEQADV 2I1L MSE A 62 UNP Q9WZW1 MET 62 MODIFIED RESIDUE SEQADV 2I1L MSE A 214 UNP Q9WZW1 MET 214 MODIFIED RESIDUE SEQADV 2I1L MSE A 254 UNP Q9WZW1 MET 254 MODIFIED RESIDUE SEQADV 2I1L MSE A 280 UNP Q9WZW1 MET 280 MODIFIED RESIDUE SEQADV 2I1L MSE B 301 UNP Q9WZW1 MET 1 MODIFIED RESIDUE SEQADV 2I1L MSE B 322 UNP Q9WZW1 MET 22 MODIFIED RESIDUE SEQADV 2I1L MSE B 354 UNP Q9WZW1 MET 54 MODIFIED RESIDUE SEQADV 2I1L MSE B 362 UNP Q9WZW1 MET 62 MODIFIED RESIDUE SEQADV 2I1L MSE B 514 UNP Q9WZW1 MET 214 MODIFIED RESIDUE SEQADV 2I1L MSE B 554 UNP Q9WZW1 MET 254 MODIFIED RESIDUE SEQADV 2I1L MSE B 580 UNP Q9WZW1 MET 280 MODIFIED RESIDUE SEQRES 1 A 293 MSE VAL VAL SER ILE GLY VAL PHE ASP GLY VAL HIS ILE SEQRES 2 A 293 GLY HIS GLN LYS VAL LEU ARG THR MSE LYS GLU ILE ALA SEQRES 3 A 293 PHE PHE ARG LYS ASP ASP SER LEU ILE TYR THR ILE SER SEQRES 4 A 293 TYR PRO PRO GLU TYR PHE LEU PRO ASP PHE PRO GLY LEU SEQRES 5 A 293 LEU MSE THR VAL GLU SER ARG VAL GLU MSE LEU SER ARG SEQRES 6 A 293 TYR ALA ARG THR VAL VAL LEU ASP PHE PHE ARG ILE LYS SEQRES 7 A 293 ASP LEU THR PRO GLU GLY PHE VAL GLU ARG TYR LEU SER SEQRES 8 A 293 GLY VAL SER ALA VAL VAL VAL GLY ARG ASP PHE ARG PHE SEQRES 9 A 293 GLY LYS ASN ALA SER GLY ASN ALA SER PHE LEU ARG LYS SEQRES 10 A 293 LYS GLY VAL GLU VAL TYR GLU ILE GLU ASP VAL VAL VAL SEQRES 11 A 293 GLN GLY LYS ARG VAL SER SER SER LEU ILE ARG ASN LEU SEQRES 12 A 293 VAL GLN GLU GLY ARG VAL GLU GLU ILE PRO ALA TYR LEU SEQRES 13 A 293 GLY ARG TYR PHE GLU ILE GLU GLY ILE VAL HIS LYS ASP SEQRES 14 A 293 ARG GLU PHE GLY ARG LYS LEU GLY PHE PRO THR ALA ASN SEQRES 15 A 293 ILE ASP ARG GLY ASN GLU LYS LEU VAL ASP LEU LYS ARG SEQRES 16 A 293 GLY VAL TYR LEU VAL ARG VAL HIS LEU PRO ASP GLY LYS SEQRES 17 A 293 LYS LYS PHE GLY VAL MSE ASN VAL GLY PHE ARG PRO THR SEQRES 18 A 293 VAL GLY ASP ALA ARG ASN VAL LYS TYR GLU VAL TYR ILE SEQRES 19 A 293 LEU ASP PHE GLU GLY ASP LEU TYR GLY GLN ARG LEU LYS SEQRES 20 A 293 LEU GLU VAL LEU LYS PHE MSE ARG ASP GLU LYS LYS PHE SEQRES 21 A 293 ASP SER ILE GLU GLU LEU LYS ALA ALA ILE ASP GLN ASP SEQRES 22 A 293 VAL LYS SER ALA ARG ASN MSE ILE ASP ASP ILE ILE ASN SEQRES 23 A 293 SER LYS PHE GLU LYS GLU GLY SEQRES 1 B 293 MSE VAL VAL SER ILE GLY VAL PHE ASP GLY VAL HIS ILE SEQRES 2 B 293 GLY HIS GLN LYS VAL LEU ARG THR MSE LYS GLU ILE ALA SEQRES 3 B 293 PHE PHE ARG LYS ASP ASP SER LEU ILE TYR THR ILE SER SEQRES 4 B 293 TYR PRO PRO GLU TYR PHE LEU PRO ASP PHE PRO GLY LEU SEQRES 5 B 293 LEU MSE THR VAL GLU SER ARG VAL GLU MSE LEU SER ARG SEQRES 6 B 293 TYR ALA ARG THR VAL VAL LEU ASP PHE PHE ARG ILE LYS SEQRES 7 B 293 ASP LEU THR PRO GLU GLY PHE VAL GLU ARG TYR LEU SER SEQRES 8 B 293 GLY VAL SER ALA VAL VAL VAL GLY ARG ASP PHE ARG PHE SEQRES 9 B 293 GLY LYS ASN ALA SER GLY ASN ALA SER PHE LEU ARG LYS SEQRES 10 B 293 LYS GLY VAL GLU VAL TYR GLU ILE GLU ASP VAL VAL VAL SEQRES 11 B 293 GLN GLY LYS ARG VAL SER SER SER LEU ILE ARG ASN LEU SEQRES 12 B 293 VAL GLN GLU GLY ARG VAL GLU GLU ILE PRO ALA TYR LEU SEQRES 13 B 293 GLY ARG TYR PHE GLU ILE GLU GLY ILE VAL HIS LYS ASP SEQRES 14 B 293 ARG GLU PHE GLY ARG LYS LEU GLY PHE PRO THR ALA ASN SEQRES 15 B 293 ILE ASP ARG GLY ASN GLU LYS LEU VAL ASP LEU LYS ARG SEQRES 16 B 293 GLY VAL TYR LEU VAL ARG VAL HIS LEU PRO ASP GLY LYS SEQRES 17 B 293 LYS LYS PHE GLY VAL MSE ASN VAL GLY PHE ARG PRO THR SEQRES 18 B 293 VAL GLY ASP ALA ARG ASN VAL LYS TYR GLU VAL TYR ILE SEQRES 19 B 293 LEU ASP PHE GLU GLY ASP LEU TYR GLY GLN ARG LEU LYS SEQRES 20 B 293 LEU GLU VAL LEU LYS PHE MSE ARG ASP GLU LYS LYS PHE SEQRES 21 B 293 ASP SER ILE GLU GLU LEU LYS ALA ALA ILE ASP GLN ASP SEQRES 22 B 293 VAL LYS SER ALA ARG ASN MSE ILE ASP ASP ILE ILE ASN SEQRES 23 B 293 SER LYS PHE GLU LYS GLU GLY MODRES 2I1L MSE A 22 MET SELENOMETHIONINE MODRES 2I1L MSE A 54 MET SELENOMETHIONINE MODRES 2I1L MSE A 62 MET SELENOMETHIONINE MODRES 2I1L MSE A 214 MET SELENOMETHIONINE MODRES 2I1L MSE A 254 MET SELENOMETHIONINE MODRES 2I1L MSE A 280 MET SELENOMETHIONINE MODRES 2I1L MSE B 322 MET SELENOMETHIONINE MODRES 2I1L MSE B 354 MET SELENOMETHIONINE MODRES 2I1L MSE B 362 MET SELENOMETHIONINE MODRES 2I1L MSE B 514 MET SELENOMETHIONINE MODRES 2I1L MSE B 554 MET SELENOMETHIONINE MODRES 2I1L MSE B 580 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 54 8 HET MSE A 62 8 HET MSE A 214 8 HET MSE A 254 8 HET MSE A 280 8 HET MSE B 322 8 HET MSE B 354 8 HET MSE B 362 8 HET MSE B 514 8 HET MSE B 554 8 HET MSE B 580 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *83(H2 O) HELIX 1 1 HIS A 12 PHE A 28 1 17 HELIX 2 2 THR A 55 ARG A 65 1 11 HELIX 3 3 ASP A 73 LYS A 78 1 6 HELIX 4 4 THR A 81 LEU A 90 1 10 HELIX 5 5 GLY A 105 SER A 109 5 5 HELIX 6 6 ASN A 111 LYS A 118 1 8 HELIX 7 7 SER A 136 GLU A 146 1 11 HELIX 8 8 ARG A 148 GLU A 151 5 4 HELIX 9 9 ILE A 152 GLY A 157 1 6 HELIX 10 10 GLU A 265 ARG A 278 1 14 HELIX 11 11 ASN A 279 GLU A 290 1 12 HELIX 12 12 HIS B 312 LYS B 330 1 19 HELIX 13 13 THR B 355 SER B 364 1 10 HELIX 14 14 THR B 381 LEU B 390 1 10 HELIX 15 15 GLY B 405 SER B 409 5 5 HELIX 16 16 ASN B 411 LYS B 417 1 7 HELIX 17 17 SER B 436 GLY B 447 1 12 HELIX 18 18 ARG B 448 GLU B 451 5 4 HELIX 19 19 ILE B 452 GLY B 457 1 6 HELIX 20 20 ILE B 563 PHE B 589 1 27 SHEET 1 A 5 ARG A 68 LEU A 72 0 SHEET 2 A 5 LEU A 34 ILE A 38 1 N ILE A 35 O VAL A 70 SHEET 3 A 5 VAL A 3 GLY A 6 1 N SER A 4 O TYR A 36 SHEET 4 A 5 ALA A 95 GLY A 99 1 O VAL A 97 N VAL A 3 SHEET 5 A 5 GLU A 121 ILE A 125 1 O GLU A 121 N VAL A 96 SHEET 1 B 2 VAL A 129 VAL A 130 0 SHEET 2 B 2 LYS A 133 ARG A 134 -1 O LYS A 133 N VAL A 130 SHEET 1 C 6 GLU A 161 ILE A 165 0 SHEET 2 C 6 ARG A 245 PHE A 253 -1 O LEU A 248 N ILE A 162 SHEET 3 C 6 GLY A 196 HIS A 203 -1 N HIS A 203 O LYS A 247 SHEET 4 C 6 LYS A 209 GLY A 217 -1 O GLY A 212 N VAL A 200 SHEET 5 C 6 LYS A 229 ILE A 234 -1 O TYR A 233 N VAL A 213 SHEET 6 C 6 THR A 180 ASN A 182 -1 N ALA A 181 O VAL A 232 SHEET 1 D 5 ARG B 368 LEU B 372 0 SHEET 2 D 5 LEU B 334 ILE B 338 1 N ILE B 335 O VAL B 370 SHEET 3 D 5 VAL B 303 GLY B 306 1 N SER B 304 O TYR B 336 SHEET 4 D 5 ALA B 395 GLY B 399 1 O VAL B 397 N VAL B 303 SHEET 5 D 5 GLU B 421 ILE B 425 1 O TYR B 423 N VAL B 398 SHEET 1 E 2 VAL B 429 VAL B 430 0 SHEET 2 E 2 LYS B 433 ARG B 434 -1 O LYS B 433 N VAL B 430 SHEET 1 F 7 PHE B 460 VAL B 466 0 SHEET 2 F 7 ALA B 481 ASP B 484 -1 O ASP B 484 N ILE B 465 SHEET 3 F 7 LYS B 529 ILE B 534 -1 O TYR B 530 N ILE B 483 SHEET 4 F 7 LYS B 509 GLY B 517 -1 N ASN B 515 O GLU B 531 SHEET 5 F 7 GLY B 496 HIS B 503 -1 N VAL B 500 O GLY B 512 SHEET 6 F 7 ARG B 545 ARG B 555 -1 O LYS B 552 N LEU B 499 SHEET 7 F 7 PHE B 460 VAL B 466 -1 N PHE B 460 O VAL B 550 LINK C THR A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N LYS A 23 1555 1555 1.33 LINK C LEU A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N THR A 55 1555 1555 1.33 LINK C GLU A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N LEU A 63 1555 1555 1.33 LINK C VAL A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N ASN A 215 1555 1555 1.33 LINK C PHE A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ARG A 255 1555 1555 1.33 LINK C ASN A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N ILE A 281 1555 1555 1.33 LINK C THR B 321 N MSE B 322 1555 1555 1.33 LINK C MSE B 322 N LYS B 323 1555 1555 1.33 LINK C LEU B 353 N MSE B 354 1555 1555 1.33 LINK C MSE B 354 N THR B 355 1555 1555 1.33 LINK C GLU B 361 N MSE B 362 1555 1555 1.33 LINK C MSE B 362 N LEU B 363 1555 1555 1.33 LINK C VAL B 513 N MSE B 514 1555 1555 1.33 LINK C MSE B 514 N ASN B 515 1555 1555 1.33 LINK C PHE B 553 N MSE B 554 1555 1555 1.33 LINK C MSE B 554 N ARG B 555 1555 1555 1.33 LINK C ASN B 579 N MSE B 580 1555 1555 1.33 LINK C MSE B 580 N ILE B 581 1555 1555 1.33 CRYST1 95.187 117.647 79.270 90.00 126.79 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010506 0.000000 0.007856 0.00000 SCALE2 0.000000 0.008500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015752 0.00000