HEADER HYDROLASE 15-AUG-06 2I1Y TITLE CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAIN OF HUMAN PTP IA-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TYROSINE-PROTEIN PHOSPHATASE; COMPND 5 SYNONYM: R-PTP-N, PTP IA-2, ISLET CELL ANTIGEN 512, ICA 512, ISLET COMPND 6 CELL AUTOANTIGEN 3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRN, ICA3, ICA512; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RECEPTOR-TYPE PROTEIN TYROSINE PHOSPHATASE PRECURSOR, PHOSPHATASE, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.FABER-BARATA,Y.PATSKOVSKY,J.ALVARADO,D.SMITH,J.KOSS,S.R.WASSERMAN, AUTHOR 2 S.OZYURT,S.ATWELL,A.POWELL,M.C.KEARINS,M.MALETIC,I.ROONEY,K.T.BAIN, AUTHOR 3 M.FREEMAN,J.C.RUSSELL,D.A.THOMPSON,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 4 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 30-AUG-23 2I1Y 1 REMARK REVDAT 4 03-FEB-21 2I1Y 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 13-JUL-11 2I1Y 1 VERSN REVDAT 2 25-MAR-08 2I1Y 1 JRNL VERSN REVDAT 1 29-AUG-06 2I1Y 0 JRNL AUTH S.C.ALMO,J.B.BONANNO,J.M.SAUDER,S.EMTAGE,T.P.DILORENZO, JRNL AUTH 2 V.MALASHKEVICH,S.R.WASSERMAN,S.SWAMINATHAN,S.ESWARAMOORTHY, JRNL AUTH 3 R.AGARWAL,D.KUMARAN,M.MADEGOWDA,S.RAGUMANI,Y.PATSKOVSKY, JRNL AUTH 4 J.ALVARADO,U.A.RAMAGOPAL,J.FABER-BARATA,M.R.CHANCE,A.SALI, JRNL AUTH 5 A.FISER,Z.Y.ZHANG,D.S.LAWRENCE,S.K.BURLEY JRNL TITL STRUCTURAL GENOMICS OF PROTEIN PHOSPHATASES JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 121 2007 JRNL REFN ISSN 1345-711X JRNL PMID 18058037 JRNL DOI 10.1007/S10969-007-9036-1 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.039 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4813 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6535 ; 1.146 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ;11.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;38.199 ;23.289 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;19.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;18.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.243 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1971 ; 0.165 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3164 ; 0.300 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 436 ; 0.204 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.153 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.201 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2995 ; 4.015 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4738 ; 5.526 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 6.788 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1789 ; 9.484 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 691 A 771 1 REMARK 3 1 B 687 B 771 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 615 ; 0.11 ; 0.10 REMARK 3 TIGHT THERMAL 1 A (A**2): 615 ; 0.85 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 778 A 977 1 REMARK 3 1 B 778 B 976 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1575 ; 0.12 ; 0.10 REMARK 3 TIGHT THERMAL 2 A (A**2): 1575 ; 0.91 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.22500 REMARK 200 R SYM (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FH7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 100 MM BIS-TRIS, 200 MM REMARK 280 AMMONIUM ACETATE, PH 6.0, 10% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.45350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.53350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.11450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.53350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.45350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.11450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 679 REMARK 465 LEU A 680 REMARK 465 GLU A 681 REMARK 465 PRO A 682 REMARK 465 ALA A 683 REMARK 465 GLN A 684 REMARK 465 ALA A 685 REMARK 465 ASN A 686 REMARK 465 MET A 687 REMARK 465 ASP A 688 REMARK 465 ILE A 689 REMARK 465 SER A 690 REMARK 465 PRO A 978 REMARK 465 GLN A 979 REMARK 465 SER B 679 REMARK 465 LEU B 680 REMARK 465 GLU B 681 REMARK 465 PRO B 682 REMARK 465 ALA B 683 REMARK 465 GLN B 684 REMARK 465 ALA B 685 REMARK 465 ASN B 686 REMARK 465 LEU B 977 REMARK 465 PRO B 978 REMARK 465 GLN B 979 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 935 CB CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 720 NE2 REMARK 480 ARG A 761 NH2 REMARK 480 ASP A 826 OD2 REMARK 480 ARG A 885 NH2 REMARK 480 ARG A 954 NH1 REMARK 480 ILE A 973 N REMARK 480 GLN B 720 NE2 REMARK 480 ARG B 761 NH2 REMARK 480 ASP B 826 OD2 REMARK 480 ARG B 954 NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 750 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 724 15.25 -142.84 REMARK 500 ASP A 815 70.71 12.48 REMARK 500 HIS A 833 -111.19 51.46 REMARK 500 CYS A 909 -114.94 -129.72 REMARK 500 SER A 910 -64.89 -100.81 REMARK 500 ALA A 913 -47.11 -136.45 REMARK 500 VAL A 953 96.06 63.00 REMARK 500 ASN B 724 13.16 -149.03 REMARK 500 GLU B 772 -100.19 -88.19 REMARK 500 GLU B 772 -100.16 -88.05 REMARK 500 ASP B 815 -104.65 38.68 REMARK 500 HIS B 833 -114.37 53.24 REMARK 500 CYS B 909 -115.91 -128.77 REMARK 500 SER B 910 -67.58 -101.08 REMARK 500 GLU B 935 109.28 -52.94 REMARK 500 VAL B 953 93.19 65.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 771 GLU A 772 141.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3287 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-8620A RELATED DB: TARGETDB DBREF 2I1Y A 681 979 UNP Q16849 PTPRN_HUMAN 681 979 DBREF 2I1Y B 681 979 UNP Q16849 PTPRN_HUMAN 681 979 SEQADV 2I1Y SER A 679 UNP Q16849 CLONING ARTIFACT SEQADV 2I1Y LEU A 680 UNP Q16849 CLONING ARTIFACT SEQADV 2I1Y SER B 679 UNP Q16849 CLONING ARTIFACT SEQADV 2I1Y LEU B 680 UNP Q16849 CLONING ARTIFACT SEQRES 1 A 301 SER LEU GLU PRO ALA GLN ALA ASN MET ASP ILE SER THR SEQRES 2 A 301 GLY HIS MET ILE LEU ALA TYR MET GLU ASP HIS LEU ARG SEQRES 3 A 301 ASN ARG ASP ARG LEU ALA LYS GLU TRP GLN ALA LEU CYS SEQRES 4 A 301 ALA TYR GLN ALA GLU PRO ASN THR CYS ALA THR ALA GLN SEQRES 5 A 301 GLY GLU GLY ASN ILE LYS LYS ASN ARG HIS PRO ASP PHE SEQRES 6 A 301 LEU PRO TYR ASP HIS ALA ARG ILE LYS LEU LYS VAL GLU SEQRES 7 A 301 SER SER PRO SER ARG SER ASP TYR ILE ASN ALA SER PRO SEQRES 8 A 301 ILE ILE GLU HIS ASP PRO ARG MET PRO ALA TYR ILE ALA SEQRES 9 A 301 THR GLN GLY PRO LEU SER HIS THR ILE ALA ASP PHE TRP SEQRES 10 A 301 GLN MET VAL TRP GLU SER GLY CYS THR VAL ILE VAL MET SEQRES 11 A 301 LEU THR PRO LEU VAL GLU ASP GLY VAL LYS GLN CYS ASP SEQRES 12 A 301 ARG TYR TRP PRO ASP GLU GLY ALA SER LEU TYR HIS VAL SEQRES 13 A 301 TYR GLU VAL ASN LEU VAL SER GLU HIS ILE TRP CYS GLU SEQRES 14 A 301 ASP PHE LEU VAL ARG SER PHE TYR LEU LYS ASN VAL GLN SEQRES 15 A 301 THR GLN GLU THR ARG THR LEU THR GLN PHE HIS PHE LEU SEQRES 16 A 301 SER TRP PRO ALA GLU GLY THR PRO ALA SER THR ARG PRO SEQRES 17 A 301 LEU LEU ASP PHE ARG ARG LYS VAL ASN LYS CYS TYR ARG SEQRES 18 A 301 GLY ARG SER CYS PRO ILE ILE VAL HIS CYS SER ASP GLY SEQRES 19 A 301 ALA GLY ARG THR GLY THR TYR ILE LEU ILE ASP MET VAL SEQRES 20 A 301 LEU ASN ARG MET ALA LYS GLY VAL LYS GLU ILE ASP ILE SEQRES 21 A 301 ALA ALA THR LEU GLU HIS VAL ARG ASP GLN ARG PRO GLY SEQRES 22 A 301 LEU VAL ARG SER LYS ASP GLN PHE GLU PHE ALA LEU THR SEQRES 23 A 301 ALA VAL ALA GLU GLU VAL ASN ALA ILE LEU LYS ALA LEU SEQRES 24 A 301 PRO GLN SEQRES 1 B 301 SER LEU GLU PRO ALA GLN ALA ASN MET ASP ILE SER THR SEQRES 2 B 301 GLY HIS MET ILE LEU ALA TYR MET GLU ASP HIS LEU ARG SEQRES 3 B 301 ASN ARG ASP ARG LEU ALA LYS GLU TRP GLN ALA LEU CYS SEQRES 4 B 301 ALA TYR GLN ALA GLU PRO ASN THR CYS ALA THR ALA GLN SEQRES 5 B 301 GLY GLU GLY ASN ILE LYS LYS ASN ARG HIS PRO ASP PHE SEQRES 6 B 301 LEU PRO TYR ASP HIS ALA ARG ILE LYS LEU LYS VAL GLU SEQRES 7 B 301 SER SER PRO SER ARG SER ASP TYR ILE ASN ALA SER PRO SEQRES 8 B 301 ILE ILE GLU HIS ASP PRO ARG MET PRO ALA TYR ILE ALA SEQRES 9 B 301 THR GLN GLY PRO LEU SER HIS THR ILE ALA ASP PHE TRP SEQRES 10 B 301 GLN MET VAL TRP GLU SER GLY CYS THR VAL ILE VAL MET SEQRES 11 B 301 LEU THR PRO LEU VAL GLU ASP GLY VAL LYS GLN CYS ASP SEQRES 12 B 301 ARG TYR TRP PRO ASP GLU GLY ALA SER LEU TYR HIS VAL SEQRES 13 B 301 TYR GLU VAL ASN LEU VAL SER GLU HIS ILE TRP CYS GLU SEQRES 14 B 301 ASP PHE LEU VAL ARG SER PHE TYR LEU LYS ASN VAL GLN SEQRES 15 B 301 THR GLN GLU THR ARG THR LEU THR GLN PHE HIS PHE LEU SEQRES 16 B 301 SER TRP PRO ALA GLU GLY THR PRO ALA SER THR ARG PRO SEQRES 17 B 301 LEU LEU ASP PHE ARG ARG LYS VAL ASN LYS CYS TYR ARG SEQRES 18 B 301 GLY ARG SER CYS PRO ILE ILE VAL HIS CYS SER ASP GLY SEQRES 19 B 301 ALA GLY ARG THR GLY THR TYR ILE LEU ILE ASP MET VAL SEQRES 20 B 301 LEU ASN ARG MET ALA LYS GLY VAL LYS GLU ILE ASP ILE SEQRES 21 B 301 ALA ALA THR LEU GLU HIS VAL ARG ASP GLN ARG PRO GLY SEQRES 22 B 301 LEU VAL ARG SER LYS ASP GLN PHE GLU PHE ALA LEU THR SEQRES 23 B 301 ALA VAL ALA GLU GLU VAL ASN ALA ILE LEU LYS ALA LEU SEQRES 24 B 301 PRO GLN HET GOL A3288 6 HET GOL B3287 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *306(H2 O) HELIX 1 1 THR A 691 ASN A 705 1 15 HELIX 2 2 ASN A 705 ALA A 718 1 14 HELIX 3 3 CYS A 726 GLY A 731 1 6 HELIX 4 4 ASN A 734 ASN A 738 5 5 HELIX 5 5 LYS A 754 SER A 758 5 5 HELIX 6 6 LEU A 787 HIS A 789 5 3 HELIX 7 7 THR A 790 GLY A 802 1 13 HELIX 8 8 THR A 884 CYS A 897 1 14 HELIX 9 9 ALA A 913 LYS A 931 1 19 HELIX 10 10 ASP A 937 ASP A 947 1 11 HELIX 11 11 SER A 955 ALA A 976 1 22 HELIX 12 12 SER B 690 ASN B 705 1 16 HELIX 13 13 ASN B 705 ALA B 718 1 14 HELIX 14 14 ASN B 734 ASN B 738 5 5 HELIX 15 15 LYS B 754 SER B 758 5 5 HELIX 16 16 LEU B 787 HIS B 789 5 3 HELIX 17 17 THR B 790 GLY B 802 1 13 HELIX 18 18 THR B 884 LYS B 896 1 13 HELIX 19 19 ALA B 913 LYS B 931 1 19 HELIX 20 20 ASP B 937 ASP B 947 1 11 HELIX 21 21 SER B 955 ALA B 976 1 22 SHEET 1 A 8 ALA A 767 ILE A 770 0 SHEET 2 A 8 TYR A 780 THR A 783 -1 O TYR A 780 N ILE A 770 SHEET 3 A 8 ILE A 905 HIS A 908 1 O VAL A 907 N ILE A 781 SHEET 4 A 8 VAL A 805 MET A 808 1 N VAL A 807 O ILE A 906 SHEET 5 A 8 THR A 864 PHE A 872 1 O PHE A 870 N ILE A 806 SHEET 6 A 8 PHE A 849 ASN A 858 -1 N PHE A 854 O LEU A 867 SHEET 7 A 8 TYR A 835 ILE A 844 -1 N GLU A 836 O LYS A 857 SHEET 8 A 8 ALA A 829 TYR A 832 -1 N SER A 830 O VAL A 837 SHEET 1 B 2 VAL A 813 GLU A 814 0 SHEET 2 B 2 VAL A 817 LYS A 818 -1 O VAL A 817 N GLU A 814 SHEET 1 C 8 ALA B 767 ILE B 770 0 SHEET 2 C 8 TYR B 780 THR B 783 -1 O TYR B 780 N ILE B 770 SHEET 3 C 8 ILE B 905 HIS B 908 1 O VAL B 907 N ILE B 781 SHEET 4 C 8 VAL B 805 MET B 808 1 N VAL B 807 O ILE B 906 SHEET 5 C 8 THR B 864 PHE B 872 1 O PHE B 870 N ILE B 806 SHEET 6 C 8 PHE B 849 ASN B 858 -1 N PHE B 854 O LEU B 867 SHEET 7 C 8 TYR B 835 ILE B 844 -1 N GLU B 836 O LYS B 857 SHEET 8 C 8 ALA B 829 TYR B 832 -1 N SER B 830 O VAL B 837 SHEET 1 D 2 VAL B 813 GLU B 814 0 SHEET 2 D 2 VAL B 817 LYS B 818 -1 O VAL B 817 N GLU B 814 CISPEP 1 GLU A 722 PRO A 723 0 4.53 CISPEP 2 GLU B 722 PRO B 723 0 -1.65 SITE 1 AC1 4 LEU A 926 MET A 929 ALA A 930 ILE A 973 SITE 1 AC2 4 LEU B 926 MET B 929 VAL B 970 ILE B 973 CRYST1 72.907 74.229 121.067 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008260 0.00000