data_2I2D # _entry.id 2I2D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2I2D pdb_00002i2d 10.2210/pdb2i2d/pdb RCSB RCSB039049 ? ? WWPDB D_1000039049 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2I1W 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I29 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I2A 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2B 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2C 'Crystal structure of LmNADK1' unspecified PDB 2I2E 'Crystal structure of LmNADK1' unspecified PDB 2I2F 'Crystal structure of LmNADK1' unspecified # _pdbx_database_status.entry_id 2I2D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-08-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Poncet-Montange, G.' 1 'Labesse, G.' 2 # _citation.id primary _citation.title 'NAD kinases use substrate-assisted catalysis for specific recognition of NAD.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 33925 _citation.page_last 33934 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17686780 _citation.pdbx_database_id_DOI 10.1074/jbc.M701394200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Poncet-Montange, G.' 1 ? primary 'Assairi, L.' 2 ? primary 'Arold, S.' 3 ? primary 'Pochet, S.' 4 ? primary 'Labesse, G.' 5 ? # _cell.entry_id 2I2D _cell.length_a 62.481 _cell.length_b 75.851 _cell.length_c 118.350 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I2D _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable inorganic polyphosphate/ATP-NAD kinase 1' 31045.279 1 2.7.1.23 ? ? ? 2 non-polymer syn 'BIS{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} DIHYDROGEN DIPHOSPHATE' 676.427 1 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 4 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PolyP, /ATP NAD kinase 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 TYR n 1 4 MET n 1 5 ILE n 1 6 THR n 1 7 SER n 1 8 LYS n 1 9 GLY n 1 10 ASP n 1 11 GLU n 1 12 LYS n 1 13 SER n 1 14 ASP n 1 15 LEU n 1 16 LEU n 1 17 ARG n 1 18 LEU n 1 19 ASN n 1 20 MET n 1 21 ILE n 1 22 ALA n 1 23 GLY n 1 24 PHE n 1 25 GLY n 1 26 GLU n 1 27 TYR n 1 28 ASP n 1 29 MET n 1 30 GLU n 1 31 TYR n 1 32 ASP n 1 33 ASP n 1 34 VAL n 1 35 GLU n 1 36 PRO n 1 37 GLU n 1 38 ILE n 1 39 VAL n 1 40 ILE n 1 41 SER n 1 42 ILE n 1 43 GLY n 1 44 GLY n 1 45 ASP n 1 46 GLY n 1 47 THR n 1 48 PHE n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 PHE n 1 53 HIS n 1 54 GLN n 1 55 TYR n 1 56 GLU n 1 57 GLU n 1 58 ARG n 1 59 LEU n 1 60 ASP n 1 61 GLU n 1 62 ILE n 1 63 ALA n 1 64 PHE n 1 65 ILE n 1 66 GLY n 1 67 ILE n 1 68 HIS n 1 69 THR n 1 70 GLY n 1 71 HIS n 1 72 LEU n 1 73 GLY n 1 74 PHE n 1 75 TYR n 1 76 ALA n 1 77 ASP n 1 78 TRP n 1 79 ARG n 1 80 PRO n 1 81 ALA n 1 82 GLU n 1 83 ALA n 1 84 ASP n 1 85 LYS n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 LEU n 1 90 LEU n 1 91 ALA n 1 92 LYS n 1 93 GLY n 1 94 GLU n 1 95 TYR n 1 96 GLN n 1 97 LYS n 1 98 VAL n 1 99 SER n 1 100 TYR n 1 101 PRO n 1 102 LEU n 1 103 LEU n 1 104 LYS n 1 105 THR n 1 106 THR n 1 107 VAL n 1 108 LYS n 1 109 TYR n 1 110 GLY n 1 111 ILE n 1 112 GLY n 1 113 LYS n 1 114 LYS n 1 115 GLU n 1 116 ALA n 1 117 THR n 1 118 TYR n 1 119 LEU n 1 120 ALA n 1 121 LEU n 1 122 ASN n 1 123 GLU n 1 124 SER n 1 125 THR n 1 126 VAL n 1 127 LYS n 1 128 SER n 1 129 SER n 1 130 GLY n 1 131 GLY n 1 132 PRO n 1 133 PHE n 1 134 VAL n 1 135 VAL n 1 136 ASP n 1 137 VAL n 1 138 VAL n 1 139 ILE n 1 140 ASN n 1 141 ASP n 1 142 ILE n 1 143 HIS n 1 144 PHE n 1 145 GLU n 1 146 ARG n 1 147 PHE n 1 148 ARG n 1 149 GLY n 1 150 ASP n 1 151 GLY n 1 152 LEU n 1 153 CYS n 1 154 MET n 1 155 SER n 1 156 THR n 1 157 PRO n 1 158 SER n 1 159 GLY n 1 160 THR n 1 161 THR n 1 162 ALA n 1 163 TYR n 1 164 ASN n 1 165 LYS n 1 166 SER n 1 167 LEU n 1 168 GLY n 1 169 GLY n 1 170 ALA n 1 171 LEU n 1 172 MET n 1 173 HIS n 1 174 PRO n 1 175 SER n 1 176 ILE n 1 177 GLU n 1 178 ALA n 1 179 MET n 1 180 GLN n 1 181 LEU n 1 182 THR n 1 183 GLU n 1 184 MET n 1 185 ALA n 1 186 SER n 1 187 ILE n 1 188 ASN n 1 189 ASN n 1 190 ARG n 1 191 VAL n 1 192 TYR n 1 193 ARG n 1 194 THR n 1 195 ILE n 1 196 GLY n 1 197 SER n 1 198 PRO n 1 199 LEU n 1 200 VAL n 1 201 PHE n 1 202 PRO n 1 203 LYS n 1 204 HIS n 1 205 HIS n 1 206 VAL n 1 207 VAL n 1 208 SER n 1 209 LEU n 1 210 GLN n 1 211 PRO n 1 212 VAL n 1 213 ASN n 1 214 ASP n 1 215 LYS n 1 216 ASP n 1 217 PHE n 1 218 GLN n 1 219 ILE n 1 220 SER n 1 221 VAL n 1 222 ASP n 1 223 HIS n 1 224 LEU n 1 225 SER n 1 226 ILE n 1 227 LEU n 1 228 HIS n 1 229 ARG n 1 230 ASP n 1 231 VAL n 1 232 GLN n 1 233 GLU n 1 234 ILE n 1 235 ARG n 1 236 TYR n 1 237 GLU n 1 238 VAL n 1 239 SER n 1 240 ALA n 1 241 LYS n 1 242 LYS n 1 243 ILE n 1 244 HIS n 1 245 PHE n 1 246 ALA n 1 247 ARG n 1 248 PHE n 1 249 ARG n 1 250 SER n 1 251 PHE n 1 252 PRO n 1 253 PHE n 1 254 TRP n 1 255 ARG n 1 256 ARG n 1 257 VAL n 1 258 HIS n 1 259 ASP n 1 260 SER n 1 261 PHE n 1 262 ILE n 1 263 GLU n 1 264 ASP n 1 265 LEU n 1 266 GLU n 1 267 HIS n 1 268 HIS n 1 269 HIS n 1 270 HIS n 1 271 HIS n 1 272 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene ppnK1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Bacteria _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1639 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPNK1_LISMO _struct_ref.pdbx_db_accession Q8Y8D7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIED ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I2D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Y8D7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 264 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I2D LEU A 265 ? UNP Q8Y8D7 ? ? 'cloning artifact' 265 1 1 2I2D GLU A 266 ? UNP Q8Y8D7 ? ? 'cloning artifact' 266 2 1 2I2D HIS A 267 ? UNP Q8Y8D7 ? ? 'expression tag' 267 3 1 2I2D HIS A 268 ? UNP Q8Y8D7 ? ? 'expression tag' 268 4 1 2I2D HIS A 269 ? UNP Q8Y8D7 ? ? 'expression tag' 269 5 1 2I2D HIS A 270 ? UNP Q8Y8D7 ? ? 'expression tag' 270 6 1 2I2D HIS A 271 ? UNP Q8Y8D7 ? ? 'expression tag' 271 7 1 2I2D HIS A 272 ? UNP Q8Y8D7 ? ? 'expression tag' 272 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2D non-polymer . 'BIS{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} DIHYDROGEN DIPHOSPHATE' "BIS(ADENOSINE)-5'-DIPHOSPHATE" 'C20 H26 N10 O13 P2' 676.427 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2I2D _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.3 M potassium chloride, 50 mM tri-sodium citrate dihydrate, 15-20% w/v polyethylene glycol 400, pH 5.4, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 # _reflns.entry_id 2I2D _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.22 _reflns.d_resolution_low 37.9 _reflns.number_all 13780 _reflns.number_obs 13383 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.9 _reflns.B_iso_Wilson_estimate 38.5 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.22 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 81.2 _reflns_shell.Rmerge_I_obs 0.411 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I2D _refine.ls_d_res_high 2.220 _refine.ls_d_res_low 37.930 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.570 _refine.ls_number_reflns_obs 13383 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.208 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.252 _refine.ls_percent_reflns_R_free 2.900 _refine.ls_number_reflns_R_free 405 _refine.B_iso_mean 34.883 _refine.aniso_B[1][1] 0.680 _refine.aniso_B[2][2] 1.850 _refine.aniso_B[3][3] -2.540 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_overall_ESU_R 0.306 _refine.pdbx_overall_ESU_R_Free 0.227 _refine.overall_SU_ML 0.159 _refine.overall_SU_B 12.595 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13780 _refine.ls_R_factor_obs 0.208 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 2i2b' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1979 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 2096 _refine_hist.d_res_high 2.220 _refine_hist.d_res_low 37.930 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2101 0.012 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 5 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2854 2.257 1.966 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 11 0.958 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 254 9.347 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 93 34.036 23.548 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 324 15.103 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 15.371 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 310 0.339 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1595 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 892 0.218 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 6 0.063 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1373 0.316 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 5 0.116 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 92 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 47 0.293 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.335 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1306 0.472 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2026 0.778 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 929 1.116 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 827 1.502 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.220 _refine_ls_shell.d_res_low 2.277 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.790 _refine_ls_shell.number_reflns_R_work 760 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 789 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I2D _struct.title 'Crystal structure of LmNADK1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I2D _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Crystal structure of LmNADK1 bound to a NAD analog, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? GLU A 26 ? ASP A 10 GLU A 26 1 ? 17 HELX_P HELX_P2 2 GLY A 44 ? TYR A 55 ? GLY A 44 TYR A 55 1 ? 12 HELX_P HELX_P3 3 GLU A 56 ? LEU A 59 ? GLU A 56 LEU A 59 5 ? 4 HELX_P HELX_P4 4 ARG A 79 ? ALA A 81 ? ARG A 79 ALA A 81 5 ? 3 HELX_P HELX_P5 5 GLU A 82 ? LYS A 92 ? GLU A 82 LYS A 92 1 ? 11 HELX_P HELX_P6 6 PRO A 157 ? THR A 161 ? PRO A 157 THR A 161 5 ? 5 HELX_P HELX_P7 7 ALA A 162 ? LEU A 167 ? ALA A 162 LEU A 167 1 ? 6 HELX_P HELX_P8 8 PRO A 252 ? ILE A 262 ? PRO A 252 ILE A 262 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 28 A . ? ASP 28 A MET 29 A ? MET 29 A 1 -26.84 2 GLY 130 A . ? GLY 130 A GLY 131 A ? GLY 131 A 1 -7.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 30 ? TYR A 31 ? GLU A 30 TYR A 31 A 2 LYS A 2 ? SER A 7 ? LYS A 2 SER A 7 A 3 ILE A 38 ? GLY A 43 ? ILE A 38 GLY A 43 A 4 ALA A 63 ? HIS A 68 ? ALA A 63 HIS A 68 B 1 ALA A 116 ? ALA A 120 ? ALA A 116 ALA A 120 B 2 GLN A 96 ? LYS A 108 ? GLN A 96 LYS A 108 B 3 GLU A 233 ? ARG A 247 ? GLU A 233 ARG A 247 B 4 VAL A 207 ? PRO A 211 ? VAL A 207 PRO A 211 B 5 PHE A 133 ? ILE A 139 ? PHE A 133 ILE A 139 B 6 ILE A 142 ? GLY A 149 ? ILE A 142 GLY A 149 C 1 LEU A 199 ? PRO A 202 ? LEU A 199 PRO A 202 C 2 ALA A 178 ? MET A 184 ? ALA A 178 MET A 184 C 3 GLY A 151 ? SER A 155 ? GLY A 151 SER A 155 C 4 GLU A 123 ? SER A 128 ? GLU A 123 SER A 128 C 5 PHE A 217 ? VAL A 221 ? PHE A 217 VAL A 221 C 6 LEU A 224 ? HIS A 228 ? LEU A 224 HIS A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 30 ? O GLU A 30 N TYR A 3 ? N TYR A 3 A 2 3 N THR A 6 ? N THR A 6 O ILE A 40 ? O ILE A 40 A 3 4 N SER A 41 ? N SER A 41 O ILE A 67 ? O ILE A 67 B 1 2 O ALA A 116 ? O ALA A 116 N VAL A 107 ? N VAL A 107 B 2 3 N VAL A 98 ? N VAL A 98 O PHE A 245 ? O PHE A 245 B 3 4 O TYR A 236 ? O TYR A 236 N VAL A 207 ? N VAL A 207 B 4 5 O SER A 208 ? O SER A 208 N VAL A 138 ? N VAL A 138 B 5 6 N VAL A 137 ? N VAL A 137 O GLU A 145 ? O GLU A 145 C 1 2 O LEU A 199 ? O LEU A 199 N LEU A 181 ? N LEU A 181 C 2 3 O GLN A 180 ? O GLN A 180 N SER A 155 ? N SER A 155 C 3 4 O MET A 154 ? O MET A 154 N SER A 124 ? N SER A 124 C 4 5 N THR A 125 ? N THR A 125 O SER A 220 ? O SER A 220 C 5 6 N PHE A 217 ? N PHE A 217 O HIS A 228 ? O HIS A 228 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A A2D 273 ? 18 'BINDING SITE FOR RESIDUE A2D A 273' AC2 Software A CIT 274 ? 7 'BINDING SITE FOR RESIDUE CIT A 274' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 ASP A 45 ? ASP A 45 . ? 1_555 ? 2 AC1 18 GLY A 46 ? GLY A 46 . ? 1_555 ? 3 AC1 18 PHE A 74 ? PHE A 74 . ? 1_555 ? 4 AC1 18 TYR A 75 ? TYR A 75 . ? 1_555 ? 5 AC1 18 ASN A 122 ? ASN A 122 . ? 1_555 ? 6 AC1 18 GLU A 123 ? GLU A 123 . ? 1_555 ? 7 AC1 18 GLY A 149 ? GLY A 149 . ? 4_555 ? 8 AC1 18 ASP A 150 ? ASP A 150 . ? 4_555 ? 9 AC1 18 SER A 158 ? SER A 158 . ? 1_555 ? 10 AC1 18 THR A 161 ? THR A 161 . ? 1_555 ? 11 AC1 18 ALA A 162 ? ALA A 162 . ? 1_555 ? 12 AC1 18 TYR A 163 ? TYR A 163 . ? 1_555 ? 13 AC1 18 SER A 166 ? SER A 166 . ? 1_555 ? 14 AC1 18 ALA A 185 ? ALA A 185 . ? 4_555 ? 15 AC1 18 ILE A 187 ? ILE A 187 . ? 4_555 ? 16 AC1 18 HIS A 223 ? HIS A 223 . ? 1_555 ? 17 AC1 18 HOH D . ? HOH A 297 . ? 4_555 ? 18 AC1 18 HOH D . ? HOH A 333 . ? 1_555 ? 19 AC2 7 VAL A 98 ? VAL A 98 . ? 1_555 ? 20 AC2 7 TYR A 100 ? TYR A 100 . ? 1_555 ? 21 AC2 7 HIS A 173 ? HIS A 173 . ? 1_555 ? 22 AC2 7 PHE A 251 ? PHE A 251 . ? 1_555 ? 23 AC2 7 PRO A 252 ? PRO A 252 . ? 1_555 ? 24 AC2 7 PHE A 253 ? PHE A 253 . ? 1_555 ? 25 AC2 7 ARG A 256 ? ARG A 256 . ? 1_555 ? # _atom_sites.entry_id 2I2D _atom_sites.fract_transf_matrix[1][1] 0.016005 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013184 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008450 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLY 70 70 ? ? ? A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 LEU 72 72 ? ? ? A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 GLY 110 110 ? ? ? A . n A 1 111 ILE 111 111 ? ? ? A . n A 1 112 GLY 112 112 ? ? ? A . n A 1 113 LYS 113 113 ? ? ? A . n A 1 114 LYS 114 114 ? ? ? A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 MET 172 172 172 MET MET A . n A 1 173 HIS 173 173 173 HIS HIS A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 MET 179 179 179 MET MET A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 HIS 204 204 204 HIS HIS A . n A 1 205 HIS 205 205 205 HIS HIS A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 PRO 211 211 211 PRO PRO A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 HIS 228 228 228 HIS HIS A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 PHE 248 248 248 PHE PHE A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 PHE 253 253 253 PHE PHE A . n A 1 254 TRP 254 254 254 TRP TRP A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 SER 260 260 260 SER SER A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 ASP 264 264 ? ? ? A . n A 1 265 LEU 265 265 ? ? ? A . n A 1 266 GLU 266 266 ? ? ? A . n A 1 267 HIS 267 267 ? ? ? A . n A 1 268 HIS 268 268 ? ? ? A . n A 1 269 HIS 269 269 ? ? ? A . n A 1 270 HIS 270 270 ? ? ? A . n A 1 271 HIS 271 271 ? ? ? A . n A 1 272 HIS 272 272 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A2D 1 273 101 A2D A2D A . C 3 CIT 1 274 201 CIT CIT A . D 4 HOH 1 275 1 HOH HOH A . D 4 HOH 2 276 2 HOH HOH A . D 4 HOH 3 277 3 HOH HOH A . D 4 HOH 4 278 4 HOH HOH A . D 4 HOH 5 279 5 HOH HOH A . D 4 HOH 6 280 6 HOH HOH A . D 4 HOH 7 281 7 HOH HOH A . D 4 HOH 8 282 8 HOH HOH A . D 4 HOH 9 283 9 HOH HOH A . D 4 HOH 10 284 10 HOH HOH A . D 4 HOH 11 285 11 HOH HOH A . D 4 HOH 12 286 12 HOH HOH A . D 4 HOH 13 287 13 HOH HOH A . D 4 HOH 14 288 14 HOH HOH A . D 4 HOH 15 289 15 HOH HOH A . D 4 HOH 16 290 16 HOH HOH A . D 4 HOH 17 291 17 HOH HOH A . D 4 HOH 18 292 18 HOH HOH A . D 4 HOH 19 293 19 HOH HOH A . D 4 HOH 20 294 20 HOH HOH A . D 4 HOH 21 295 21 HOH HOH A . D 4 HOH 22 296 22 HOH HOH A . D 4 HOH 23 297 23 HOH HOH A . D 4 HOH 24 298 24 HOH HOH A . D 4 HOH 25 299 25 HOH HOH A . D 4 HOH 26 300 26 HOH HOH A . D 4 HOH 27 301 27 HOH HOH A . D 4 HOH 28 302 28 HOH HOH A . D 4 HOH 29 303 29 HOH HOH A . D 4 HOH 30 304 30 HOH HOH A . D 4 HOH 31 305 31 HOH HOH A . D 4 HOH 32 306 32 HOH HOH A . D 4 HOH 33 307 33 HOH HOH A . D 4 HOH 34 308 34 HOH HOH A . D 4 HOH 35 309 35 HOH HOH A . D 4 HOH 36 310 36 HOH HOH A . D 4 HOH 37 311 37 HOH HOH A . D 4 HOH 38 312 38 HOH HOH A . D 4 HOH 39 313 39 HOH HOH A . D 4 HOH 40 314 40 HOH HOH A . D 4 HOH 41 315 41 HOH HOH A . D 4 HOH 42 316 42 HOH HOH A . D 4 HOH 43 317 43 HOH HOH A . D 4 HOH 44 318 44 HOH HOH A . D 4 HOH 45 319 45 HOH HOH A . D 4 HOH 46 320 46 HOH HOH A . D 4 HOH 47 321 47 HOH HOH A . D 4 HOH 48 322 48 HOH HOH A . D 4 HOH 49 323 49 HOH HOH A . D 4 HOH 50 324 50 HOH HOH A . D 4 HOH 51 325 51 HOH HOH A . D 4 HOH 52 326 52 HOH HOH A . D 4 HOH 53 327 53 HOH HOH A . D 4 HOH 54 328 54 HOH HOH A . D 4 HOH 55 329 55 HOH HOH A . D 4 HOH 56 330 56 HOH HOH A . D 4 HOH 57 331 57 HOH HOH A . D 4 HOH 58 332 58 HOH HOH A . D 4 HOH 59 333 59 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 62.4810000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 62.4810000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 302 ? D HOH . 2 1 A HOH 314 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-02-14 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Experimental preparation' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.7138 23.8751 21.5719 0.0056 0.0009 -0.0624 0.0472 0.0315 -0.0569 3.0554 1.2393 5.4419 -0.2742 -1.4667 1.0291 -0.1057 0.0316 0.0741 -0.0612 0.0333 0.1618 0.0520 -0.0978 -0.2403 'X-RAY DIFFRACTION' 2 ? refined 21.6088 26.3227 25.7091 0.1314 0.2044 0.0969 0.0383 0.0119 -0.1121 2.2342 0.3888 5.0879 0.4488 -1.7126 0.7178 0.0017 0.2158 -0.2176 -0.7559 0.2871 -0.1461 0.0793 -0.2109 0.0805 'X-RAY DIFFRACTION' 3 ? refined 31.4026 13.5432 16.8324 -0.0921 -0.0697 -0.1539 -0.0037 0.0247 -0.0284 1.0763 15.3909 10.7429 3.8210 -1.9582 -3.3297 0.0291 0.0177 -0.0468 -0.3290 -0.0846 -0.3357 0.9146 -0.1428 0.0750 'X-RAY DIFFRACTION' 4 ? refined 17.4806 13.3998 -4.3418 -0.1050 -0.0789 -0.1260 0.0232 0.0014 0.0144 1.5218 1.9878 2.5476 -0.2951 -0.1023 0.2098 0.0380 -0.0546 0.0166 0.1108 0.0637 0.3533 -0.1294 0.0113 -0.3540 'X-RAY DIFFRACTION' 5 ? refined 18.3769 9.8304 13.3409 0.1742 0.1774 -0.0317 -0.0380 0.1139 0.0554 47.0430 92.8698 22.9484 -0.3686 31.6295 12.2512 -0.4663 1.4288 -0.9624 -1.1696 -2.5904 1.3755 0.5661 0.4782 -2.1383 'X-RAY DIFFRACTION' 6 ? refined 29.8399 24.5099 14.3665 0.2683 0.1989 -0.0028 -0.2128 0.0099 0.0478 267.9790 164.4969 68.0229 -165.0771 -21.1956 77.6097 -0.8604 -0.6377 1.4981 -2.8908 3.0349 -1.6610 -6.3000 -4.4099 3.6353 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 76 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 77 A 97 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 A 245 A 251 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 A 252 A 263 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 A 98 A 244 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 A 273 A 273 ? . . . . ? 'X-RAY DIFFRACTION' 7 6 A 274 A 274 ? . . . . ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 MOLREP . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ALA 185 ? ? O A HOH 297 ? ? 1.91 2 1 N A PHE 253 ? ? O2 A CIT 274 ? ? 2.07 3 1 OE1 A GLU 123 ? ? O2E A A2D 273 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N6B _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 A2D _pdbx_validate_symm_contact.auth_seq_id_1 273 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 297 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 32 ? ? CG A ASP 32 ? ? OD2 A ASP 32 ? ? 124.92 118.30 6.62 0.90 N 2 1 CB A ASP 222 ? ? CG A ASP 222 ? ? OD2 A ASP 222 ? ? 125.02 118.30 6.72 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 29 ? ? 97.03 71.65 2 1 ASP A 77 ? ? 144.49 -51.87 3 1 GLU A 94 ? ? -92.58 53.09 4 1 ASN A 122 ? ? -98.23 -69.24 5 1 ASP A 141 ? ? 74.61 -11.30 6 1 ALA A 162 ? ? -103.80 -129.92 7 1 ALA A 185 ? ? 38.09 69.06 8 1 HIS A 204 ? ? 84.89 -14.47 9 1 ASN A 213 ? ? -103.93 -110.37 10 1 ASP A 214 ? ? 54.43 89.26 11 1 ASP A 222 ? ? 51.03 -121.66 12 1 PHE A 248 ? ? 147.60 -53.29 13 1 ILE A 262 ? ? -99.33 -62.63 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA A 76 ? ? ASP A 77 ? ? -69.79 2 1 ASN A 213 ? ? ASP A 214 ? ? 62.37 3 1 ARG A 247 ? ? PHE A 248 ? ? -36.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 11 ? CG ? A GLU 11 CG 2 1 Y 1 A GLU 11 ? CD ? A GLU 11 CD 3 1 Y 1 A GLU 11 ? OE1 ? A GLU 11 OE1 4 1 Y 1 A GLU 11 ? OE2 ? A GLU 11 OE2 5 1 Y 1 A LYS 12 ? CG ? A LYS 12 CG 6 1 Y 1 A LYS 12 ? CD ? A LYS 12 CD 7 1 Y 1 A LYS 12 ? CE ? A LYS 12 CE 8 1 Y 1 A LYS 12 ? NZ ? A LYS 12 NZ 9 1 Y 1 A LEU 15 ? CG ? A LEU 15 CG 10 1 Y 1 A LEU 15 ? CD1 ? A LEU 15 CD1 11 1 Y 1 A LEU 15 ? CD2 ? A LEU 15 CD2 12 1 Y 1 A ASP 28 ? CB ? A ASP 28 CB 13 1 Y 1 A ASP 28 ? CG ? A ASP 28 CG 14 1 Y 1 A ASP 28 ? OD1 ? A ASP 28 OD1 15 1 Y 1 A ASP 28 ? OD2 ? A ASP 28 OD2 16 1 Y 1 A GLU 35 ? CG ? A GLU 35 CG 17 1 Y 1 A GLU 35 ? CD ? A GLU 35 CD 18 1 Y 1 A GLU 35 ? OE1 ? A GLU 35 OE1 19 1 Y 1 A GLU 35 ? OE2 ? A GLU 35 OE2 20 1 Y 1 A LYS 85 ? CG ? A LYS 85 CG 21 1 Y 1 A LYS 85 ? CD ? A LYS 85 CD 22 1 Y 1 A LYS 85 ? CE ? A LYS 85 CE 23 1 Y 1 A LYS 85 ? NZ ? A LYS 85 NZ 24 1 Y 1 A LYS 88 ? CG ? A LYS 88 CG 25 1 Y 1 A LYS 88 ? CD ? A LYS 88 CD 26 1 Y 1 A LYS 88 ? CE ? A LYS 88 CE 27 1 Y 1 A LYS 88 ? NZ ? A LYS 88 NZ 28 1 Y 1 A ALA 91 ? CB ? A ALA 91 CB 29 1 Y 1 A LYS 92 ? CG ? A LYS 92 CG 30 1 Y 1 A LYS 92 ? CD ? A LYS 92 CD 31 1 Y 1 A LYS 92 ? CE ? A LYS 92 CE 32 1 Y 1 A LYS 92 ? NZ ? A LYS 92 NZ 33 1 Y 1 A GLN 96 ? CG ? A GLN 96 CG 34 1 Y 1 A GLN 96 ? CD ? A GLN 96 CD 35 1 Y 1 A GLN 96 ? OE1 ? A GLN 96 OE1 36 1 Y 1 A GLN 96 ? NE2 ? A GLN 96 NE2 37 1 Y 1 A ARG 190 ? CG ? A ARG 190 CG 38 1 Y 1 A ARG 190 ? CD ? A ARG 190 CD 39 1 Y 1 A ARG 190 ? NE ? A ARG 190 NE 40 1 Y 1 A ARG 190 ? CZ ? A ARG 190 CZ 41 1 Y 1 A ARG 190 ? NH1 ? A ARG 190 NH1 42 1 Y 1 A ARG 190 ? NH2 ? A ARG 190 NH2 43 1 Y 1 A VAL 191 ? CB ? A VAL 191 CB 44 1 Y 1 A VAL 191 ? CG1 ? A VAL 191 CG1 45 1 Y 1 A VAL 191 ? CG2 ? A VAL 191 CG2 46 1 Y 1 A ARG 193 ? CG ? A ARG 193 CG 47 1 Y 1 A ARG 193 ? CD ? A ARG 193 CD 48 1 Y 1 A ARG 193 ? NE ? A ARG 193 NE 49 1 Y 1 A ARG 193 ? CZ ? A ARG 193 CZ 50 1 Y 1 A ARG 193 ? NH1 ? A ARG 193 NH1 51 1 Y 1 A ARG 193 ? NH2 ? A ARG 193 NH2 52 1 Y 1 A GLN 232 ? CG ? A GLN 232 CG 53 1 Y 1 A GLN 232 ? CD ? A GLN 232 CD 54 1 Y 1 A GLN 232 ? OE1 ? A GLN 232 OE1 55 1 Y 1 A GLN 232 ? NE2 ? A GLN 232 NE2 56 1 Y 1 A ARG 247 ? CB ? A ARG 247 CB 57 1 Y 1 A ARG 247 ? CG ? A ARG 247 CG 58 1 Y 1 A ARG 247 ? CD ? A ARG 247 CD 59 1 Y 1 A ARG 247 ? NE ? A ARG 247 NE 60 1 Y 1 A ARG 247 ? CZ ? A ARG 247 CZ 61 1 Y 1 A ARG 247 ? NH1 ? A ARG 247 NH1 62 1 Y 1 A ARG 247 ? NH2 ? A ARG 247 NH2 63 1 Y 1 A ARG 249 ? CG ? A ARG 249 CG 64 1 Y 1 A ARG 249 ? CD ? A ARG 249 CD 65 1 Y 1 A ARG 249 ? NE ? A ARG 249 NE 66 1 Y 1 A ARG 249 ? CZ ? A ARG 249 CZ 67 1 Y 1 A ARG 249 ? NH1 ? A ARG 249 NH1 68 1 Y 1 A ARG 249 ? NH2 ? A ARG 249 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 70 ? A GLY 70 2 1 Y 1 A HIS 71 ? A HIS 71 3 1 Y 1 A LEU 72 ? A LEU 72 4 1 Y 1 A GLY 110 ? A GLY 110 5 1 Y 1 A ILE 111 ? A ILE 111 6 1 Y 1 A GLY 112 ? A GLY 112 7 1 Y 1 A LYS 113 ? A LYS 113 8 1 Y 1 A LYS 114 ? A LYS 114 9 1 Y 1 A ASP 264 ? A ASP 264 10 1 Y 1 A LEU 265 ? A LEU 265 11 1 Y 1 A GLU 266 ? A GLU 266 12 1 Y 1 A HIS 267 ? A HIS 267 13 1 Y 1 A HIS 268 ? A HIS 268 14 1 Y 1 A HIS 269 ? A HIS 269 15 1 Y 1 A HIS 270 ? A HIS 270 16 1 Y 1 A HIS 271 ? A HIS 271 17 1 Y 1 A HIS 272 ? A HIS 272 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2D PA P N S 1 A2D O1A O N N 2 A2D O2A O N N 3 A2D O3A O N N 4 A2D PB P N R 5 A2D O1B O N N 6 A2D O2B O N N 7 A2D O5D O N N 8 A2D C5D C N N 9 A2D C4D C N R 10 A2D O4D O N N 11 A2D C3D C N S 12 A2D O3D O N N 13 A2D C2D C N R 14 A2D O2D O N N 15 A2D C1D C N R 16 A2D N9A N Y N 17 A2D C8A C Y N 18 A2D N7A N Y N 19 A2D C5A C Y N 20 A2D C6A C Y N 21 A2D N6A N N N 22 A2D N1A N Y N 23 A2D C2A C Y N 24 A2D N3A N Y N 25 A2D C4A C Y N 26 A2D O5E O N N 27 A2D C5E C N N 28 A2D C4E C N R 29 A2D O4E O N N 30 A2D C3E C N S 31 A2D O3E O N N 32 A2D C2E C N R 33 A2D O2E O N N 34 A2D C1E C N R 35 A2D N9B N Y N 36 A2D C8B C Y N 37 A2D N7B N Y N 38 A2D C5B C Y N 39 A2D C6B C Y N 40 A2D N6B N N N 41 A2D N1B N Y N 42 A2D C2B C Y N 43 A2D N3B N Y N 44 A2D C4B C Y N 45 A2D HO1A H N N 46 A2D HO2B H N N 47 A2D HD1 H N N 48 A2D HD2 H N N 49 A2D H4D H N N 50 A2D H3CA H N N 51 A2D H3OA H N N 52 A2D H2CA H N N 53 A2D H2OA H N N 54 A2D H1D H N N 55 A2D H8A H N N 56 A2D H6A1 H N N 57 A2D H6A2 H N N 58 A2D H2A H N N 59 A2D HE1 H N N 60 A2D HE2 H N N 61 A2D H4E H N N 62 A2D H3CB H N N 63 A2D H3OB H N N 64 A2D H2CB H N N 65 A2D H2OB H N N 66 A2D H1E H N N 67 A2D H8B H N N 68 A2D H6B1 H N N 69 A2D H6B2 H N N 70 A2D H2B H N N 71 ALA N N N N 72 ALA CA C N S 73 ALA C C N N 74 ALA O O N N 75 ALA CB C N N 76 ALA OXT O N N 77 ALA H H N N 78 ALA H2 H N N 79 ALA HA H N N 80 ALA HB1 H N N 81 ALA HB2 H N N 82 ALA HB3 H N N 83 ALA HXT H N N 84 ARG N N N N 85 ARG CA C N S 86 ARG C C N N 87 ARG O O N N 88 ARG CB C N N 89 ARG CG C N N 90 ARG CD C N N 91 ARG NE N N N 92 ARG CZ C N N 93 ARG NH1 N N N 94 ARG NH2 N N N 95 ARG OXT O N N 96 ARG H H N N 97 ARG H2 H N N 98 ARG HA H N N 99 ARG HB2 H N N 100 ARG HB3 H N N 101 ARG HG2 H N N 102 ARG HG3 H N N 103 ARG HD2 H N N 104 ARG HD3 H N N 105 ARG HE H N N 106 ARG HH11 H N N 107 ARG HH12 H N N 108 ARG HH21 H N N 109 ARG HH22 H N N 110 ARG HXT H N N 111 ASN N N N N 112 ASN CA C N S 113 ASN C C N N 114 ASN O O N N 115 ASN CB C N N 116 ASN CG C N N 117 ASN OD1 O N N 118 ASN ND2 N N N 119 ASN OXT O N N 120 ASN H H N N 121 ASN H2 H N N 122 ASN HA H N N 123 ASN HB2 H N N 124 ASN HB3 H N N 125 ASN HD21 H N N 126 ASN HD22 H N N 127 ASN HXT H N N 128 ASP N N N N 129 ASP CA C N S 130 ASP C C N N 131 ASP O O N N 132 ASP CB C N N 133 ASP CG C N N 134 ASP OD1 O N N 135 ASP OD2 O N N 136 ASP OXT O N N 137 ASP H H N N 138 ASP H2 H N N 139 ASP HA H N N 140 ASP HB2 H N N 141 ASP HB3 H N N 142 ASP HD2 H N N 143 ASP HXT H N N 144 CIT C1 C N N 145 CIT O1 O N N 146 CIT O2 O N N 147 CIT C2 C N N 148 CIT C3 C N N 149 CIT O7 O N N 150 CIT C4 C N N 151 CIT C5 C N N 152 CIT O3 O N N 153 CIT O4 O N N 154 CIT C6 C N N 155 CIT O5 O N N 156 CIT O6 O N N 157 CIT HO2 H N N 158 CIT H21 H N N 159 CIT H22 H N N 160 CIT HO7 H N N 161 CIT H41 H N N 162 CIT H42 H N N 163 CIT HO4 H N N 164 CIT HO6 H N N 165 CYS N N N N 166 CYS CA C N R 167 CYS C C N N 168 CYS O O N N 169 CYS CB C N N 170 CYS SG S N N 171 CYS OXT O N N 172 CYS H H N N 173 CYS H2 H N N 174 CYS HA H N N 175 CYS HB2 H N N 176 CYS HB3 H N N 177 CYS HG H N N 178 CYS HXT H N N 179 GLN N N N N 180 GLN CA C N S 181 GLN C C N N 182 GLN O O N N 183 GLN CB C N N 184 GLN CG C N N 185 GLN CD C N N 186 GLN OE1 O N N 187 GLN NE2 N N N 188 GLN OXT O N N 189 GLN H H N N 190 GLN H2 H N N 191 GLN HA H N N 192 GLN HB2 H N N 193 GLN HB3 H N N 194 GLN HG2 H N N 195 GLN HG3 H N N 196 GLN HE21 H N N 197 GLN HE22 H N N 198 GLN HXT H N N 199 GLU N N N N 200 GLU CA C N S 201 GLU C C N N 202 GLU O O N N 203 GLU CB C N N 204 GLU CG C N N 205 GLU CD C N N 206 GLU OE1 O N N 207 GLU OE2 O N N 208 GLU OXT O N N 209 GLU H H N N 210 GLU H2 H N N 211 GLU HA H N N 212 GLU HB2 H N N 213 GLU HB3 H N N 214 GLU HG2 H N N 215 GLU HG3 H N N 216 GLU HE2 H N N 217 GLU HXT H N N 218 GLY N N N N 219 GLY CA C N N 220 GLY C C N N 221 GLY O O N N 222 GLY OXT O N N 223 GLY H H N N 224 GLY H2 H N N 225 GLY HA2 H N N 226 GLY HA3 H N N 227 GLY HXT H N N 228 HIS N N N N 229 HIS CA C N S 230 HIS C C N N 231 HIS O O N N 232 HIS CB C N N 233 HIS CG C Y N 234 HIS ND1 N Y N 235 HIS CD2 C Y N 236 HIS CE1 C Y N 237 HIS NE2 N Y N 238 HIS OXT O N N 239 HIS H H N N 240 HIS H2 H N N 241 HIS HA H N N 242 HIS HB2 H N N 243 HIS HB3 H N N 244 HIS HD1 H N N 245 HIS HD2 H N N 246 HIS HE1 H N N 247 HIS HE2 H N N 248 HIS HXT H N N 249 HOH O O N N 250 HOH H1 H N N 251 HOH H2 H N N 252 ILE N N N N 253 ILE CA C N S 254 ILE C C N N 255 ILE O O N N 256 ILE CB C N S 257 ILE CG1 C N N 258 ILE CG2 C N N 259 ILE CD1 C N N 260 ILE OXT O N N 261 ILE H H N N 262 ILE H2 H N N 263 ILE HA H N N 264 ILE HB H N N 265 ILE HG12 H N N 266 ILE HG13 H N N 267 ILE HG21 H N N 268 ILE HG22 H N N 269 ILE HG23 H N N 270 ILE HD11 H N N 271 ILE HD12 H N N 272 ILE HD13 H N N 273 ILE HXT H N N 274 LEU N N N N 275 LEU CA C N S 276 LEU C C N N 277 LEU O O N N 278 LEU CB C N N 279 LEU CG C N N 280 LEU CD1 C N N 281 LEU CD2 C N N 282 LEU OXT O N N 283 LEU H H N N 284 LEU H2 H N N 285 LEU HA H N N 286 LEU HB2 H N N 287 LEU HB3 H N N 288 LEU HG H N N 289 LEU HD11 H N N 290 LEU HD12 H N N 291 LEU HD13 H N N 292 LEU HD21 H N N 293 LEU HD22 H N N 294 LEU HD23 H N N 295 LEU HXT H N N 296 LYS N N N N 297 LYS CA C N S 298 LYS C C N N 299 LYS O O N N 300 LYS CB C N N 301 LYS CG C N N 302 LYS CD C N N 303 LYS CE C N N 304 LYS NZ N N N 305 LYS OXT O N N 306 LYS H H N N 307 LYS H2 H N N 308 LYS HA H N N 309 LYS HB2 H N N 310 LYS HB3 H N N 311 LYS HG2 H N N 312 LYS HG3 H N N 313 LYS HD2 H N N 314 LYS HD3 H N N 315 LYS HE2 H N N 316 LYS HE3 H N N 317 LYS HZ1 H N N 318 LYS HZ2 H N N 319 LYS HZ3 H N N 320 LYS HXT H N N 321 MET N N N N 322 MET CA C N S 323 MET C C N N 324 MET O O N N 325 MET CB C N N 326 MET CG C N N 327 MET SD S N N 328 MET CE C N N 329 MET OXT O N N 330 MET H H N N 331 MET H2 H N N 332 MET HA H N N 333 MET HB2 H N N 334 MET HB3 H N N 335 MET HG2 H N N 336 MET HG3 H N N 337 MET HE1 H N N 338 MET HE2 H N N 339 MET HE3 H N N 340 MET HXT H N N 341 PHE N N N N 342 PHE CA C N S 343 PHE C C N N 344 PHE O O N N 345 PHE CB C N N 346 PHE CG C Y N 347 PHE CD1 C Y N 348 PHE CD2 C Y N 349 PHE CE1 C Y N 350 PHE CE2 C Y N 351 PHE CZ C Y N 352 PHE OXT O N N 353 PHE H H N N 354 PHE H2 H N N 355 PHE HA H N N 356 PHE HB2 H N N 357 PHE HB3 H N N 358 PHE HD1 H N N 359 PHE HD2 H N N 360 PHE HE1 H N N 361 PHE HE2 H N N 362 PHE HZ H N N 363 PHE HXT H N N 364 PRO N N N N 365 PRO CA C N S 366 PRO C C N N 367 PRO O O N N 368 PRO CB C N N 369 PRO CG C N N 370 PRO CD C N N 371 PRO OXT O N N 372 PRO H H N N 373 PRO HA H N N 374 PRO HB2 H N N 375 PRO HB3 H N N 376 PRO HG2 H N N 377 PRO HG3 H N N 378 PRO HD2 H N N 379 PRO HD3 H N N 380 PRO HXT H N N 381 SER N N N N 382 SER CA C N S 383 SER C C N N 384 SER O O N N 385 SER CB C N N 386 SER OG O N N 387 SER OXT O N N 388 SER H H N N 389 SER H2 H N N 390 SER HA H N N 391 SER HB2 H N N 392 SER HB3 H N N 393 SER HG H N N 394 SER HXT H N N 395 THR N N N N 396 THR CA C N S 397 THR C C N N 398 THR O O N N 399 THR CB C N R 400 THR OG1 O N N 401 THR CG2 C N N 402 THR OXT O N N 403 THR H H N N 404 THR H2 H N N 405 THR HA H N N 406 THR HB H N N 407 THR HG1 H N N 408 THR HG21 H N N 409 THR HG22 H N N 410 THR HG23 H N N 411 THR HXT H N N 412 TRP N N N N 413 TRP CA C N S 414 TRP C C N N 415 TRP O O N N 416 TRP CB C N N 417 TRP CG C Y N 418 TRP CD1 C Y N 419 TRP CD2 C Y N 420 TRP NE1 N Y N 421 TRP CE2 C Y N 422 TRP CE3 C Y N 423 TRP CZ2 C Y N 424 TRP CZ3 C Y N 425 TRP CH2 C Y N 426 TRP OXT O N N 427 TRP H H N N 428 TRP H2 H N N 429 TRP HA H N N 430 TRP HB2 H N N 431 TRP HB3 H N N 432 TRP HD1 H N N 433 TRP HE1 H N N 434 TRP HE3 H N N 435 TRP HZ2 H N N 436 TRP HZ3 H N N 437 TRP HH2 H N N 438 TRP HXT H N N 439 TYR N N N N 440 TYR CA C N S 441 TYR C C N N 442 TYR O O N N 443 TYR CB C N N 444 TYR CG C Y N 445 TYR CD1 C Y N 446 TYR CD2 C Y N 447 TYR CE1 C Y N 448 TYR CE2 C Y N 449 TYR CZ C Y N 450 TYR OH O N N 451 TYR OXT O N N 452 TYR H H N N 453 TYR H2 H N N 454 TYR HA H N N 455 TYR HB2 H N N 456 TYR HB3 H N N 457 TYR HD1 H N N 458 TYR HD2 H N N 459 TYR HE1 H N N 460 TYR HE2 H N N 461 TYR HH H N N 462 TYR HXT H N N 463 VAL N N N N 464 VAL CA C N S 465 VAL C C N N 466 VAL O O N N 467 VAL CB C N N 468 VAL CG1 C N N 469 VAL CG2 C N N 470 VAL OXT O N N 471 VAL H H N N 472 VAL H2 H N N 473 VAL HA H N N 474 VAL HB H N N 475 VAL HG11 H N N 476 VAL HG12 H N N 477 VAL HG13 H N N 478 VAL HG21 H N N 479 VAL HG22 H N N 480 VAL HG23 H N N 481 VAL HXT H N N 482 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2D PA O5D sing N N 1 A2D PA O3A sing N N 2 A2D PA O2A doub N N 3 A2D PA O1A sing N N 4 A2D O1A HO1A sing N N 5 A2D O3A PB sing N N 6 A2D PB O5E sing N N 7 A2D PB O1B doub N N 8 A2D PB O2B sing N N 9 A2D O2B HO2B sing N N 10 A2D O5D C5D sing N N 11 A2D C5D C4D sing N N 12 A2D C5D HD1 sing N N 13 A2D C5D HD2 sing N N 14 A2D C4D O4D sing N N 15 A2D C4D C3D sing N N 16 A2D C4D H4D sing N N 17 A2D O4D C1D sing N N 18 A2D C3D C2D sing N N 19 A2D C3D O3D sing N N 20 A2D C3D H3CA sing N N 21 A2D O3D H3OA sing N N 22 A2D C2D C1D sing N N 23 A2D C2D O2D sing N N 24 A2D C2D H2CA sing N N 25 A2D O2D H2OA sing N N 26 A2D C1D N9A sing N N 27 A2D C1D H1D sing N N 28 A2D N9A C8A sing Y N 29 A2D N9A C4A sing Y N 30 A2D C8A N7A doub Y N 31 A2D C8A H8A sing N N 32 A2D N7A C5A sing Y N 33 A2D C5A C6A sing Y N 34 A2D C5A C4A doub Y N 35 A2D C6A N6A sing N N 36 A2D C6A N1A doub Y N 37 A2D N6A H6A1 sing N N 38 A2D N6A H6A2 sing N N 39 A2D N1A C2A sing Y N 40 A2D C2A N3A doub Y N 41 A2D C2A H2A sing N N 42 A2D N3A C4A sing Y N 43 A2D O5E C5E sing N N 44 A2D C5E C4E sing N N 45 A2D C5E HE1 sing N N 46 A2D C5E HE2 sing N N 47 A2D C4E C3E sing N N 48 A2D C4E O4E sing N N 49 A2D C4E H4E sing N N 50 A2D O4E C1E sing N N 51 A2D C3E C2E sing N N 52 A2D C3E O3E sing N N 53 A2D C3E H3CB sing N N 54 A2D O3E H3OB sing N N 55 A2D C2E O2E sing N N 56 A2D C2E C1E sing N N 57 A2D C2E H2CB sing N N 58 A2D O2E H2OB sing N N 59 A2D C1E N9B sing N N 60 A2D C1E H1E sing N N 61 A2D N9B C8B sing Y N 62 A2D N9B C4B sing Y N 63 A2D C8B N7B doub Y N 64 A2D C8B H8B sing N N 65 A2D N7B C5B sing Y N 66 A2D C5B C6B doub Y N 67 A2D C5B C4B sing Y N 68 A2D C6B N6B sing N N 69 A2D C6B N1B sing Y N 70 A2D N6B H6B1 sing N N 71 A2D N6B H6B2 sing N N 72 A2D N1B C2B doub Y N 73 A2D C2B N3B sing Y N 74 A2D C2B H2B sing N N 75 A2D N3B C4B doub Y N 76 ALA N CA sing N N 77 ALA N H sing N N 78 ALA N H2 sing N N 79 ALA CA C sing N N 80 ALA CA CB sing N N 81 ALA CA HA sing N N 82 ALA C O doub N N 83 ALA C OXT sing N N 84 ALA CB HB1 sing N N 85 ALA CB HB2 sing N N 86 ALA CB HB3 sing N N 87 ALA OXT HXT sing N N 88 ARG N CA sing N N 89 ARG N H sing N N 90 ARG N H2 sing N N 91 ARG CA C sing N N 92 ARG CA CB sing N N 93 ARG CA HA sing N N 94 ARG C O doub N N 95 ARG C OXT sing N N 96 ARG CB CG sing N N 97 ARG CB HB2 sing N N 98 ARG CB HB3 sing N N 99 ARG CG CD sing N N 100 ARG CG HG2 sing N N 101 ARG CG HG3 sing N N 102 ARG CD NE sing N N 103 ARG CD HD2 sing N N 104 ARG CD HD3 sing N N 105 ARG NE CZ sing N N 106 ARG NE HE sing N N 107 ARG CZ NH1 sing N N 108 ARG CZ NH2 doub N N 109 ARG NH1 HH11 sing N N 110 ARG NH1 HH12 sing N N 111 ARG NH2 HH21 sing N N 112 ARG NH2 HH22 sing N N 113 ARG OXT HXT sing N N 114 ASN N CA sing N N 115 ASN N H sing N N 116 ASN N H2 sing N N 117 ASN CA C sing N N 118 ASN CA CB sing N N 119 ASN CA HA sing N N 120 ASN C O doub N N 121 ASN C OXT sing N N 122 ASN CB CG sing N N 123 ASN CB HB2 sing N N 124 ASN CB HB3 sing N N 125 ASN CG OD1 doub N N 126 ASN CG ND2 sing N N 127 ASN ND2 HD21 sing N N 128 ASN ND2 HD22 sing N N 129 ASN OXT HXT sing N N 130 ASP N CA sing N N 131 ASP N H sing N N 132 ASP N H2 sing N N 133 ASP CA C sing N N 134 ASP CA CB sing N N 135 ASP CA HA sing N N 136 ASP C O doub N N 137 ASP C OXT sing N N 138 ASP CB CG sing N N 139 ASP CB HB2 sing N N 140 ASP CB HB3 sing N N 141 ASP CG OD1 doub N N 142 ASP CG OD2 sing N N 143 ASP OD2 HD2 sing N N 144 ASP OXT HXT sing N N 145 CIT C1 O1 doub N N 146 CIT C1 O2 sing N N 147 CIT C1 C2 sing N N 148 CIT O2 HO2 sing N N 149 CIT C2 C3 sing N N 150 CIT C2 H21 sing N N 151 CIT C2 H22 sing N N 152 CIT C3 O7 sing N N 153 CIT C3 C4 sing N N 154 CIT C3 C6 sing N N 155 CIT O7 HO7 sing N N 156 CIT C4 C5 sing N N 157 CIT C4 H41 sing N N 158 CIT C4 H42 sing N N 159 CIT C5 O3 doub N N 160 CIT C5 O4 sing N N 161 CIT O4 HO4 sing N N 162 CIT C6 O5 doub N N 163 CIT C6 O6 sing N N 164 CIT O6 HO6 sing N N 165 CYS N CA sing N N 166 CYS N H sing N N 167 CYS N H2 sing N N 168 CYS CA C sing N N 169 CYS CA CB sing N N 170 CYS CA HA sing N N 171 CYS C O doub N N 172 CYS C OXT sing N N 173 CYS CB SG sing N N 174 CYS CB HB2 sing N N 175 CYS CB HB3 sing N N 176 CYS SG HG sing N N 177 CYS OXT HXT sing N N 178 GLN N CA sing N N 179 GLN N H sing N N 180 GLN N H2 sing N N 181 GLN CA C sing N N 182 GLN CA CB sing N N 183 GLN CA HA sing N N 184 GLN C O doub N N 185 GLN C OXT sing N N 186 GLN CB CG sing N N 187 GLN CB HB2 sing N N 188 GLN CB HB3 sing N N 189 GLN CG CD sing N N 190 GLN CG HG2 sing N N 191 GLN CG HG3 sing N N 192 GLN CD OE1 doub N N 193 GLN CD NE2 sing N N 194 GLN NE2 HE21 sing N N 195 GLN NE2 HE22 sing N N 196 GLN OXT HXT sing N N 197 GLU N CA sing N N 198 GLU N H sing N N 199 GLU N H2 sing N N 200 GLU CA C sing N N 201 GLU CA CB sing N N 202 GLU CA HA sing N N 203 GLU C O doub N N 204 GLU C OXT sing N N 205 GLU CB CG sing N N 206 GLU CB HB2 sing N N 207 GLU CB HB3 sing N N 208 GLU CG CD sing N N 209 GLU CG HG2 sing N N 210 GLU CG HG3 sing N N 211 GLU CD OE1 doub N N 212 GLU CD OE2 sing N N 213 GLU OE2 HE2 sing N N 214 GLU OXT HXT sing N N 215 GLY N CA sing N N 216 GLY N H sing N N 217 GLY N H2 sing N N 218 GLY CA C sing N N 219 GLY CA HA2 sing N N 220 GLY CA HA3 sing N N 221 GLY C O doub N N 222 GLY C OXT sing N N 223 GLY OXT HXT sing N N 224 HIS N CA sing N N 225 HIS N H sing N N 226 HIS N H2 sing N N 227 HIS CA C sing N N 228 HIS CA CB sing N N 229 HIS CA HA sing N N 230 HIS C O doub N N 231 HIS C OXT sing N N 232 HIS CB CG sing N N 233 HIS CB HB2 sing N N 234 HIS CB HB3 sing N N 235 HIS CG ND1 sing Y N 236 HIS CG CD2 doub Y N 237 HIS ND1 CE1 doub Y N 238 HIS ND1 HD1 sing N N 239 HIS CD2 NE2 sing Y N 240 HIS CD2 HD2 sing N N 241 HIS CE1 NE2 sing Y N 242 HIS CE1 HE1 sing N N 243 HIS NE2 HE2 sing N N 244 HIS OXT HXT sing N N 245 HOH O H1 sing N N 246 HOH O H2 sing N N 247 ILE N CA sing N N 248 ILE N H sing N N 249 ILE N H2 sing N N 250 ILE CA C sing N N 251 ILE CA CB sing N N 252 ILE CA HA sing N N 253 ILE C O doub N N 254 ILE C OXT sing N N 255 ILE CB CG1 sing N N 256 ILE CB CG2 sing N N 257 ILE CB HB sing N N 258 ILE CG1 CD1 sing N N 259 ILE CG1 HG12 sing N N 260 ILE CG1 HG13 sing N N 261 ILE CG2 HG21 sing N N 262 ILE CG2 HG22 sing N N 263 ILE CG2 HG23 sing N N 264 ILE CD1 HD11 sing N N 265 ILE CD1 HD12 sing N N 266 ILE CD1 HD13 sing N N 267 ILE OXT HXT sing N N 268 LEU N CA sing N N 269 LEU N H sing N N 270 LEU N H2 sing N N 271 LEU CA C sing N N 272 LEU CA CB sing N N 273 LEU CA HA sing N N 274 LEU C O doub N N 275 LEU C OXT sing N N 276 LEU CB CG sing N N 277 LEU CB HB2 sing N N 278 LEU CB HB3 sing N N 279 LEU CG CD1 sing N N 280 LEU CG CD2 sing N N 281 LEU CG HG sing N N 282 LEU CD1 HD11 sing N N 283 LEU CD1 HD12 sing N N 284 LEU CD1 HD13 sing N N 285 LEU CD2 HD21 sing N N 286 LEU CD2 HD22 sing N N 287 LEU CD2 HD23 sing N N 288 LEU OXT HXT sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 MET N CA sing N N 314 MET N H sing N N 315 MET N H2 sing N N 316 MET CA C sing N N 317 MET CA CB sing N N 318 MET CA HA sing N N 319 MET C O doub N N 320 MET C OXT sing N N 321 MET CB CG sing N N 322 MET CB HB2 sing N N 323 MET CB HB3 sing N N 324 MET CG SD sing N N 325 MET CG HG2 sing N N 326 MET CG HG3 sing N N 327 MET SD CE sing N N 328 MET CE HE1 sing N N 329 MET CE HE2 sing N N 330 MET CE HE3 sing N N 331 MET OXT HXT sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 THR N CA sing N N 386 THR N H sing N N 387 THR N H2 sing N N 388 THR CA C sing N N 389 THR CA CB sing N N 390 THR CA HA sing N N 391 THR C O doub N N 392 THR C OXT sing N N 393 THR CB OG1 sing N N 394 THR CB CG2 sing N N 395 THR CB HB sing N N 396 THR OG1 HG1 sing N N 397 THR CG2 HG21 sing N N 398 THR CG2 HG22 sing N N 399 THR CG2 HG23 sing N N 400 THR OXT HXT sing N N 401 TRP N CA sing N N 402 TRP N H sing N N 403 TRP N H2 sing N N 404 TRP CA C sing N N 405 TRP CA CB sing N N 406 TRP CA HA sing N N 407 TRP C O doub N N 408 TRP C OXT sing N N 409 TRP CB CG sing N N 410 TRP CB HB2 sing N N 411 TRP CB HB3 sing N N 412 TRP CG CD1 doub Y N 413 TRP CG CD2 sing Y N 414 TRP CD1 NE1 sing Y N 415 TRP CD1 HD1 sing N N 416 TRP CD2 CE2 doub Y N 417 TRP CD2 CE3 sing Y N 418 TRP NE1 CE2 sing Y N 419 TRP NE1 HE1 sing N N 420 TRP CE2 CZ2 sing Y N 421 TRP CE3 CZ3 doub Y N 422 TRP CE3 HE3 sing N N 423 TRP CZ2 CH2 doub Y N 424 TRP CZ2 HZ2 sing N N 425 TRP CZ3 CH2 sing Y N 426 TRP CZ3 HZ3 sing N N 427 TRP CH2 HH2 sing N N 428 TRP OXT HXT sing N N 429 TYR N CA sing N N 430 TYR N H sing N N 431 TYR N H2 sing N N 432 TYR CA C sing N N 433 TYR CA CB sing N N 434 TYR CA HA sing N N 435 TYR C O doub N N 436 TYR C OXT sing N N 437 TYR CB CG sing N N 438 TYR CB HB2 sing N N 439 TYR CB HB3 sing N N 440 TYR CG CD1 doub Y N 441 TYR CG CD2 sing Y N 442 TYR CD1 CE1 sing Y N 443 TYR CD1 HD1 sing N N 444 TYR CD2 CE2 doub Y N 445 TYR CD2 HD2 sing N N 446 TYR CE1 CZ doub Y N 447 TYR CE1 HE1 sing N N 448 TYR CE2 CZ sing Y N 449 TYR CE2 HE2 sing N N 450 TYR CZ OH sing N N 451 TYR OH HH sing N N 452 TYR OXT HXT sing N N 453 VAL N CA sing N N 454 VAL N H sing N N 455 VAL N H2 sing N N 456 VAL CA C sing N N 457 VAL CA CB sing N N 458 VAL CA HA sing N N 459 VAL C O doub N N 460 VAL C OXT sing N N 461 VAL CB CG1 sing N N 462 VAL CB CG2 sing N N 463 VAL CB HB sing N N 464 VAL CG1 HG11 sing N N 465 VAL CG1 HG12 sing N N 466 VAL CG1 HG13 sing N N 467 VAL CG2 HG21 sing N N 468 VAL CG2 HG22 sing N N 469 VAL CG2 HG23 sing N N 470 VAL OXT HXT sing N N 471 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BIS{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} DIHYDROGEN DIPHOSPHATE' A2D 3 'CITRIC ACID' CIT 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2I2B _pdbx_initial_refinement_model.details 'PDB ENTRY 2i2b' #