data_2I2E # _entry.id 2I2E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2I2E RCSB RCSB039050 WWPDB D_1000039050 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-03-07 _pdbx_database_PDB_obs_spr.pdb_id 4DY6 _pdbx_database_PDB_obs_spr.replace_pdb_id 2I2E _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2I1W 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I29 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I2A 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2B 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2C 'Crystal structure of LmNADK1' unspecified PDB 2I2D 'Crystal structure of LmNADK1' unspecified PDB 2I2F 'Crystal structure of LmNADK1' unspecified # _pdbx_database_status.entry_id 2I2E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-08-16 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Poncet-Montange, G.' 1 'Assairi, L.' 2 'Arold, S.' 3 'Pochet, S.' 4 'Labesse, G.' 5 # _citation.id primary _citation.title 'NAD kinases use substrate-assisted catalysis for specific recognition of NAD.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 33925 _citation.page_last 33934 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17686780 _citation.pdbx_database_id_DOI 10.1074/jbc.M701394200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Poncet-Montange, G.' 1 primary 'Assairi, L.' 2 primary 'Arold, S.' 3 primary 'Pochet, S.' 4 primary 'Labesse, G.' 5 # _cell.entry_id 2I2E _cell.length_a 63.103 _cell.length_b 75.728 _cell.length_c 118.848 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I2E _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable inorganic polyphosphate/ATP-NAD kinase 1' 31045.279 1 2.7.1.23 ? ? ? 2 non-polymer syn ;[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE ; 756.407 1 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PolyP, /ATP NAD kinase 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 TYR n 1 4 MET n 1 5 ILE n 1 6 THR n 1 7 SER n 1 8 LYS n 1 9 GLY n 1 10 ASP n 1 11 GLU n 1 12 LYS n 1 13 SER n 1 14 ASP n 1 15 LEU n 1 16 LEU n 1 17 ARG n 1 18 LEU n 1 19 ASN n 1 20 MET n 1 21 ILE n 1 22 ALA n 1 23 GLY n 1 24 PHE n 1 25 GLY n 1 26 GLU n 1 27 TYR n 1 28 ASP n 1 29 MET n 1 30 GLU n 1 31 TYR n 1 32 ASP n 1 33 ASP n 1 34 VAL n 1 35 GLU n 1 36 PRO n 1 37 GLU n 1 38 ILE n 1 39 VAL n 1 40 ILE n 1 41 SER n 1 42 ILE n 1 43 GLY n 1 44 GLY n 1 45 ASP n 1 46 GLY n 1 47 THR n 1 48 PHE n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 PHE n 1 53 HIS n 1 54 GLN n 1 55 TYR n 1 56 GLU n 1 57 GLU n 1 58 ARG n 1 59 LEU n 1 60 ASP n 1 61 GLU n 1 62 ILE n 1 63 ALA n 1 64 PHE n 1 65 ILE n 1 66 GLY n 1 67 ILE n 1 68 HIS n 1 69 THR n 1 70 GLY n 1 71 HIS n 1 72 LEU n 1 73 GLY n 1 74 PHE n 1 75 TYR n 1 76 ALA n 1 77 ASP n 1 78 TRP n 1 79 ARG n 1 80 PRO n 1 81 ALA n 1 82 GLU n 1 83 ALA n 1 84 ASP n 1 85 LYS n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 LEU n 1 90 LEU n 1 91 ALA n 1 92 LYS n 1 93 GLY n 1 94 GLU n 1 95 TYR n 1 96 GLN n 1 97 LYS n 1 98 VAL n 1 99 SER n 1 100 TYR n 1 101 PRO n 1 102 LEU n 1 103 LEU n 1 104 LYS n 1 105 THR n 1 106 THR n 1 107 VAL n 1 108 LYS n 1 109 TYR n 1 110 GLY n 1 111 ILE n 1 112 GLY n 1 113 LYS n 1 114 LYS n 1 115 GLU n 1 116 ALA n 1 117 THR n 1 118 TYR n 1 119 LEU n 1 120 ALA n 1 121 LEU n 1 122 ASN n 1 123 GLU n 1 124 SER n 1 125 THR n 1 126 VAL n 1 127 LYS n 1 128 SER n 1 129 SER n 1 130 GLY n 1 131 GLY n 1 132 PRO n 1 133 PHE n 1 134 VAL n 1 135 VAL n 1 136 ASP n 1 137 VAL n 1 138 VAL n 1 139 ILE n 1 140 ASN n 1 141 ASP n 1 142 ILE n 1 143 HIS n 1 144 PHE n 1 145 GLU n 1 146 ARG n 1 147 PHE n 1 148 ARG n 1 149 GLY n 1 150 ASP n 1 151 GLY n 1 152 LEU n 1 153 CYS n 1 154 MET n 1 155 SER n 1 156 THR n 1 157 PRO n 1 158 SER n 1 159 GLY n 1 160 THR n 1 161 THR n 1 162 ALA n 1 163 TYR n 1 164 ASN n 1 165 LYS n 1 166 SER n 1 167 LEU n 1 168 GLY n 1 169 GLY n 1 170 ALA n 1 171 LEU n 1 172 MET n 1 173 HIS n 1 174 PRO n 1 175 SER n 1 176 ILE n 1 177 GLU n 1 178 ALA n 1 179 MET n 1 180 GLN n 1 181 LEU n 1 182 THR n 1 183 GLU n 1 184 MET n 1 185 ALA n 1 186 SER n 1 187 ILE n 1 188 ASN n 1 189 ASN n 1 190 ARG n 1 191 VAL n 1 192 TYR n 1 193 ARG n 1 194 THR n 1 195 ILE n 1 196 GLY n 1 197 SER n 1 198 PRO n 1 199 LEU n 1 200 VAL n 1 201 PHE n 1 202 PRO n 1 203 LYS n 1 204 HIS n 1 205 HIS n 1 206 VAL n 1 207 VAL n 1 208 SER n 1 209 LEU n 1 210 GLN n 1 211 PRO n 1 212 VAL n 1 213 ASN n 1 214 ASP n 1 215 LYS n 1 216 ASP n 1 217 PHE n 1 218 GLN n 1 219 ILE n 1 220 SER n 1 221 VAL n 1 222 ASP n 1 223 HIS n 1 224 LEU n 1 225 SER n 1 226 ILE n 1 227 LEU n 1 228 HIS n 1 229 ARG n 1 230 ASP n 1 231 VAL n 1 232 GLN n 1 233 GLU n 1 234 ILE n 1 235 ARG n 1 236 TYR n 1 237 GLU n 1 238 VAL n 1 239 SER n 1 240 ALA n 1 241 LYS n 1 242 LYS n 1 243 ILE n 1 244 HIS n 1 245 PHE n 1 246 ALA n 1 247 ARG n 1 248 PHE n 1 249 ARG n 1 250 SER n 1 251 PHE n 1 252 PRO n 1 253 PHE n 1 254 TRP n 1 255 ARG n 1 256 ARG n 1 257 VAL n 1 258 HIS n 1 259 ASP n 1 260 SER n 1 261 PHE n 1 262 ILE n 1 263 GLU n 1 264 ASP n 1 265 LEU n 1 266 GLU n 1 267 HIS n 1 268 HIS n 1 269 HIS n 1 270 HIS n 1 271 HIS n 1 272 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene ppnK1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1639 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPNK1_LISMO _struct_ref.pdbx_db_accession Q8Y8D7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIED ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I2E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Y8D7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 264 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I2E LEU A 265 ? UNP Q8Y8D7 ? ? 'CLONING ARTIFACT' 265 1 1 2I2E GLU A 266 ? UNP Q8Y8D7 ? ? 'CLONING ARTIFACT' 266 2 1 2I2E HIS A 267 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 267 3 1 2I2E HIS A 268 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 268 4 1 2I2E HIS A 269 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 269 5 1 2I2E HIS A 270 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 270 6 1 2I2E HIS A 271 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 271 7 1 2I2E HIS A 272 ? UNP Q8Y8D7 ? ? 'EXPRESSION TAG' 272 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A22 non-polymer . ;[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE ; ;2'-PHOSPHATE BIS(ADENOSINE)-5'-DIPHOSPHATE ; 'C20 H27 N10 O16 P3' 756.407 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2I2E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.temp 333 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.3 M potassium chloride, 50 mM tri-sodium citrate dihydrate, 15-20% w/v polyethylene glycol 400, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 333K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 # _reflns.entry_id 2I2E _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 35.1 _reflns.number_all 14651 _reflns.number_obs 13914 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.6 _reflns.B_iso_Wilson_estimate 38.3 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 94.0 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I2E _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 35.090 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.850 _refine.ls_number_reflns_obs 13914 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.205 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.238 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 737 _refine.B_iso_mean 40.673 _refine.aniso_B[1][1] 1.090 _refine.aniso_B[2][2] 2.760 _refine.aniso_B[3][3] -3.850 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.pdbx_overall_ESU_R 0.290 _refine.pdbx_overall_ESU_R_Free 0.210 _refine.overall_SU_ML 0.149 _refine.overall_SU_B 11.838 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 13914 _refine.ls_number_reflns_all 14651 _refine.ls_R_factor_obs 0.205 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 2i2d' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2018 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2134 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 35.090 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2147 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2913 1.452 1.975 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 253 9.131 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 98 34.376 23.265 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 347 15.608 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 16.436 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 316 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1618 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 815 0.201 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1372 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 92 0.151 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 39 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 3 0.293 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1319 0.479 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2039 0.760 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 973 1.092 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 874 1.529 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 90.520 _refine_ls_shell.number_reflns_R_work 916 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.R_factor_R_free 0.35 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 964 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I2E _struct.title 'Crystal structure of LmNADK1' _struct.pdbx_descriptor 'Probable inorganic polyphosphate/ATP-NAD kinase 1 (E.C.2.7.1.23)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I2E _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Crystal structure of LmNADK1 bound to a NAD analog, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? GLY A 25 ? ASP A 10 GLY A 25 1 ? 16 HELX_P HELX_P2 2 GLY A 44 ? TYR A 55 ? GLY A 44 TYR A 55 1 ? 12 HELX_P HELX_P3 3 GLU A 56 ? LEU A 59 ? GLU A 56 LEU A 59 5 ? 4 HELX_P HELX_P4 4 ARG A 79 ? ALA A 81 ? ARG A 79 ALA A 81 5 ? 3 HELX_P HELX_P5 5 GLU A 82 ? LYS A 92 ? GLU A 82 LYS A 92 1 ? 11 HELX_P HELX_P6 6 PRO A 157 ? THR A 161 ? PRO A 157 THR A 161 5 ? 5 HELX_P HELX_P7 7 ALA A 162 ? LEU A 167 ? ALA A 162 LEU A 167 1 ? 6 HELX_P HELX_P8 8 PRO A 252 ? ILE A 262 ? PRO A 252 ILE A 262 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 28 A . ? ASP 28 A MET 29 A ? MET 29 A 1 -4.40 2 GLY 130 A . ? GLY 130 A GLY 131 A ? GLY 131 A 1 -9.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel C 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 30 ? TYR A 31 ? GLU A 30 TYR A 31 A 2 LYS A 2 ? SER A 7 ? LYS A 2 SER A 7 A 3 ILE A 38 ? GLY A 43 ? ILE A 38 GLY A 43 A 4 ALA A 63 ? HIS A 68 ? ALA A 63 HIS A 68 B 1 ALA A 116 ? ALA A 120 ? ALA A 116 ALA A 120 B 2 GLN A 96 ? LYS A 108 ? GLN A 96 LYS A 108 B 3 GLU A 233 ? ARG A 247 ? GLU A 233 ARG A 247 B 4 VAL A 207 ? PRO A 211 ? VAL A 207 PRO A 211 B 5 PHE A 133 ? ILE A 139 ? PHE A 133 ILE A 139 B 6 ILE A 142 ? SER A 155 ? ILE A 142 SER A 155 B 7 ALA A 178 ? SER A 186 ? ALA A 178 SER A 186 B 8 LEU A 199 ? PRO A 202 ? LEU A 199 PRO A 202 C 1 ALA A 116 ? ALA A 120 ? ALA A 116 ALA A 120 C 2 GLN A 96 ? LYS A 108 ? GLN A 96 LYS A 108 C 3 GLU A 233 ? ARG A 247 ? GLU A 233 ARG A 247 C 4 VAL A 207 ? PRO A 211 ? VAL A 207 PRO A 211 C 5 PHE A 133 ? ILE A 139 ? PHE A 133 ILE A 139 C 6 ILE A 142 ? SER A 155 ? ILE A 142 SER A 155 C 7 GLU A 123 ? SER A 128 ? GLU A 123 SER A 128 C 8 PHE A 217 ? VAL A 221 ? PHE A 217 VAL A 221 C 9 LEU A 224 ? HIS A 228 ? LEU A 224 HIS A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 30 ? O GLU A 30 N TYR A 3 ? N TYR A 3 A 2 3 N THR A 6 ? N THR A 6 O ILE A 40 ? O ILE A 40 A 3 4 N SER A 41 ? N SER A 41 O ILE A 67 ? O ILE A 67 B 1 2 O ALA A 116 ? O ALA A 116 N VAL A 107 ? N VAL A 107 B 2 3 N GLN A 96 ? N GLN A 96 O ARG A 247 ? O ARG A 247 B 3 4 O TYR A 236 ? O TYR A 236 N VAL A 207 ? N VAL A 207 B 4 5 O SER A 208 ? O SER A 208 N VAL A 138 ? N VAL A 138 B 5 6 N VAL A 137 ? N VAL A 137 O GLU A 145 ? O GLU A 145 B 6 7 N CYS A 153 ? N CYS A 153 O THR A 182 ? O THR A 182 B 7 8 N LEU A 181 ? N LEU A 181 O LEU A 199 ? O LEU A 199 C 1 2 O ALA A 116 ? O ALA A 116 N VAL A 107 ? N VAL A 107 C 2 3 N GLN A 96 ? N GLN A 96 O ARG A 247 ? O ARG A 247 C 3 4 O TYR A 236 ? O TYR A 236 N VAL A 207 ? N VAL A 207 C 4 5 O SER A 208 ? O SER A 208 N VAL A 138 ? N VAL A 138 C 5 6 N VAL A 137 ? N VAL A 137 O GLU A 145 ? O GLU A 145 C 6 7 O MET A 154 ? O MET A 154 N SER A 124 ? N SER A 124 C 7 8 N THR A 125 ? N THR A 125 O SER A 220 ? O SER A 220 C 8 9 N ILE A 219 ? N ILE A 219 O ILE A 226 ? O ILE A 226 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE A22 A 273' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE CIT A 274' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 GLY A 44 ? GLY A 44 . ? 1_555 ? 2 AC1 20 ASP A 45 ? ASP A 45 . ? 1_555 ? 3 AC1 20 GLY A 46 ? GLY A 46 . ? 1_555 ? 4 AC1 20 PHE A 74 ? PHE A 74 . ? 1_555 ? 5 AC1 20 ASN A 122 ? ASN A 122 . ? 1_555 ? 6 AC1 20 GLU A 123 ? GLU A 123 . ? 1_555 ? 7 AC1 20 GLY A 149 ? GLY A 149 . ? 4_555 ? 8 AC1 20 ASP A 150 ? ASP A 150 . ? 4_555 ? 9 AC1 20 SER A 158 ? SER A 158 . ? 1_555 ? 10 AC1 20 THR A 161 ? THR A 161 . ? 1_555 ? 11 AC1 20 ALA A 162 ? ALA A 162 . ? 1_555 ? 12 AC1 20 TYR A 163 ? TYR A 163 . ? 1_555 ? 13 AC1 20 SER A 166 ? SER A 166 . ? 1_555 ? 14 AC1 20 ALA A 185 ? ALA A 185 . ? 4_555 ? 15 AC1 20 ILE A 187 ? ILE A 187 . ? 4_555 ? 16 AC1 20 HIS A 223 ? HIS A 223 . ? 1_555 ? 17 AC1 20 HOH D . ? HOH A 313 . ? 1_555 ? 18 AC1 20 HOH D . ? HOH A 318 . ? 4_555 ? 19 AC1 20 HOH D . ? HOH A 320 . ? 1_555 ? 20 AC1 20 HOH D . ? HOH A 325 . ? 1_555 ? 21 AC2 10 VAL A 98 ? VAL A 98 . ? 1_555 ? 22 AC2 10 TYR A 100 ? TYR A 100 . ? 1_555 ? 23 AC2 10 HIS A 173 ? HIS A 173 . ? 1_555 ? 24 AC2 10 ARG A 247 ? ARG A 247 . ? 1_555 ? 25 AC2 10 PHE A 251 ? PHE A 251 . ? 1_555 ? 26 AC2 10 PRO A 252 ? PRO A 252 . ? 1_555 ? 27 AC2 10 PHE A 253 ? PHE A 253 . ? 1_555 ? 28 AC2 10 ARG A 256 ? ARG A 256 . ? 1_555 ? 29 AC2 10 HOH D . ? HOH A 321 . ? 1_555 ? 30 AC2 10 HOH D . ? HOH A 328 . ? 1_555 ? # _atom_sites.entry_id 2I2E _atom_sites.fract_transf_matrix[1][1] 0.015847 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013205 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 LEU 72 72 ? ? ? A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 GLY 110 110 ? ? ? A . n A 1 111 ILE 111 111 ? ? ? A . n A 1 112 GLY 112 112 ? ? ? A . n A 1 113 LYS 113 113 ? ? ? A . n A 1 114 LYS 114 114 ? ? ? A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 MET 172 172 172 MET MET A . n A 1 173 HIS 173 173 173 HIS HIS A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 MET 179 179 179 MET MET A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 HIS 204 204 204 HIS HIS A . n A 1 205 HIS 205 205 205 HIS HIS A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 PRO 211 211 211 PRO PRO A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 HIS 228 228 228 HIS HIS A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 PHE 248 248 248 PHE PHE A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 PHE 253 253 253 PHE PHE A . n A 1 254 TRP 254 254 254 TRP TRP A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 SER 260 260 260 SER SER A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 ASP 264 264 ? ? ? A . n A 1 265 LEU 265 265 ? ? ? A . n A 1 266 GLU 266 266 ? ? ? A . n A 1 267 HIS 267 267 ? ? ? A . n A 1 268 HIS 268 268 ? ? ? A . n A 1 269 HIS 269 269 ? ? ? A . n A 1 270 HIS 270 270 ? ? ? A . n A 1 271 HIS 271 271 ? ? ? A . n A 1 272 HIS 272 272 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A22 1 273 101 A22 A22 A . C 3 CIT 1 274 201 CIT CIT A . D 4 HOH 1 275 1 HOH HOH A . D 4 HOH 2 276 2 HOH HOH A . D 4 HOH 3 277 3 HOH HOH A . D 4 HOH 4 278 4 HOH HOH A . D 4 HOH 5 279 5 HOH HOH A . D 4 HOH 6 280 6 HOH HOH A . D 4 HOH 7 281 7 HOH HOH A . D 4 HOH 8 282 8 HOH HOH A . D 4 HOH 9 283 9 HOH HOH A . D 4 HOH 10 284 10 HOH HOH A . D 4 HOH 11 285 11 HOH HOH A . D 4 HOH 12 286 12 HOH HOH A . D 4 HOH 13 287 13 HOH HOH A . D 4 HOH 14 288 14 HOH HOH A . D 4 HOH 15 289 15 HOH HOH A . D 4 HOH 16 290 16 HOH HOH A . D 4 HOH 17 291 17 HOH HOH A . D 4 HOH 18 292 18 HOH HOH A . D 4 HOH 19 293 19 HOH HOH A . D 4 HOH 20 294 20 HOH HOH A . D 4 HOH 21 295 21 HOH HOH A . D 4 HOH 22 296 22 HOH HOH A . D 4 HOH 23 297 23 HOH HOH A . D 4 HOH 24 298 24 HOH HOH A . D 4 HOH 25 299 25 HOH HOH A . D 4 HOH 26 300 26 HOH HOH A . D 4 HOH 27 301 27 HOH HOH A . D 4 HOH 28 302 28 HOH HOH A . D 4 HOH 29 303 29 HOH HOH A . D 4 HOH 30 304 30 HOH HOH A . D 4 HOH 31 305 31 HOH HOH A . D 4 HOH 32 306 32 HOH HOH A . D 4 HOH 33 307 33 HOH HOH A . D 4 HOH 34 308 34 HOH HOH A . D 4 HOH 35 309 35 HOH HOH A . D 4 HOH 36 310 36 HOH HOH A . D 4 HOH 37 311 37 HOH HOH A . D 4 HOH 38 312 38 HOH HOH A . D 4 HOH 39 313 39 HOH HOH A . D 4 HOH 40 314 40 HOH HOH A . D 4 HOH 41 315 41 HOH HOH A . D 4 HOH 42 316 42 HOH HOH A . D 4 HOH 43 317 43 HOH HOH A . D 4 HOH 44 318 44 HOH HOH A . D 4 HOH 45 319 45 HOH HOH A . D 4 HOH 46 320 46 HOH HOH A . D 4 HOH 47 321 47 HOH HOH A . D 4 HOH 48 322 48 HOH HOH A . D 4 HOH 49 323 49 HOH HOH A . D 4 HOH 50 324 50 HOH HOH A . D 4 HOH 51 325 51 HOH HOH A . D 4 HOH 52 326 52 HOH HOH A . D 4 HOH 53 327 53 HOH HOH A . D 4 HOH 54 328 54 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 63.1030000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 63.1030000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 302 ? D HOH . 2 1 A HOH 317 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-07 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.9107 23.8839 21.9936 0.0061 -0.0050 -0.0811 0.0396 0.0460 -0.0662 3.6639 1.1218 6.5191 -0.0516 -1.2088 1.0237 -0.1097 0.0181 0.0916 -0.1226 0.0956 0.1173 0.0397 -0.1117 -0.2706 'X-RAY DIFFRACTION' 2 ? refined 22.2308 26.6242 25.7044 0.2074 0.1532 0.1004 0.0294 0.0242 -0.1221 2.5527 0.1301 3.1658 0.4556 -0.4232 0.3129 0.0249 0.1295 -0.1545 -0.7301 0.3795 -0.1440 -0.0145 -0.2210 0.3257 'X-RAY DIFFRACTION' 3 ? refined 31.7071 13.6727 16.8764 -0.0861 -0.0305 -0.1729 -0.0278 0.0370 -0.0673 0.3360 16.7153 7.4648 2.2077 -0.7096 -1.0327 0.0922 -0.0304 -0.0618 -0.4146 -0.0206 -0.2166 1.1148 -0.0538 -0.1728 'X-RAY DIFFRACTION' 4 ? refined 17.7099 13.4572 -4.3669 -0.1224 -0.0875 -0.1342 0.0392 0.0009 0.0079 1.5262 2.2336 3.1144 -0.2637 0.0188 0.1739 0.0368 -0.0923 0.0555 0.0918 0.0998 0.3843 -0.1429 -0.0029 -0.3832 'X-RAY DIFFRACTION' 5 ? refined 17.5890 8.8507 11.6122 0.2010 -0.0768 0.0269 -0.0543 0.1274 0.0605 6.7299 7.9897 10.0712 -5.3018 -1.6700 7.3836 0.2418 -0.9840 0.7423 -0.7448 -0.8667 1.0793 1.7005 0.3426 -1.6570 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 76 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 77 A 97 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 A 245 A 251 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 A 252 A 263 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 A 98 A 244 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 A 273 A 273 ? . . . . ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC5 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 REFMAC 5.2.0005 ? ? ? ? refinement ? ? ? 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 10 ? ? CG A ASP 10 ? ? OD2 A ASP 10 ? ? 124.00 118.30 5.70 0.90 N 2 1 CB A ASP 32 ? ? CG A ASP 32 ? ? OD2 A ASP 32 ? ? 124.27 118.30 5.97 0.90 N 3 1 CB A ASP 222 ? ? CG A ASP 222 ? ? OD2 A ASP 222 ? ? 124.80 118.30 6.50 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 29 ? ? 73.91 108.08 2 1 ASP A 77 ? ? 87.99 -59.93 3 1 GLU A 94 ? ? -95.58 48.11 4 1 ASN A 122 ? ? -94.81 -73.28 5 1 ASP A 141 ? ? 74.95 -1.32 6 1 ALA A 162 ? ? -99.10 -129.17 7 1 ALA A 185 ? ? 38.62 67.14 8 1 HIS A 204 ? ? 87.74 -9.66 9 1 ASN A 213 ? ? -106.06 -115.42 10 1 ASP A 214 ? ? 43.77 94.03 11 1 ASP A 222 ? ? 54.85 -120.24 12 1 PHE A 248 ? ? 156.13 -62.38 13 1 ILE A 262 ? ? -101.52 -62.17 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA A 76 ? ? ASP A 77 ? ? 37.72 2 1 ASN A 213 ? ? ASP A 214 ? ? 73.99 3 1 ARG A 247 ? ? PHE A 248 ? ? -61.46 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 28 ? CB ? A ASP 28 CB 2 1 Y 1 A ASP 28 ? CG ? A ASP 28 CG 3 1 Y 1 A ASP 28 ? OD1 ? A ASP 28 OD1 4 1 Y 1 A ASP 28 ? OD2 ? A ASP 28 OD2 5 1 Y 1 A LYS 85 ? CG ? A LYS 85 CG 6 1 Y 1 A LYS 85 ? CD ? A LYS 85 CD 7 1 Y 1 A LYS 85 ? CE ? A LYS 85 CE 8 1 Y 1 A LYS 85 ? NZ ? A LYS 85 NZ 9 1 Y 1 A ALA 91 ? CB ? A ALA 91 CB 10 1 Y 1 A LYS 92 ? CG ? A LYS 92 CG 11 1 Y 1 A LYS 92 ? CD ? A LYS 92 CD 12 1 Y 1 A LYS 92 ? CE ? A LYS 92 CE 13 1 Y 1 A LYS 92 ? NZ ? A LYS 92 NZ 14 1 Y 1 A GLU 94 ? CG ? A GLU 94 CG 15 1 Y 1 A GLU 94 ? CD ? A GLU 94 CD 16 1 Y 1 A GLU 94 ? OE1 ? A GLU 94 OE1 17 1 Y 1 A GLU 94 ? OE2 ? A GLU 94 OE2 18 1 Y 1 A ARG 190 ? CG ? A ARG 190 CG 19 1 Y 1 A ARG 190 ? CD ? A ARG 190 CD 20 1 Y 1 A ARG 190 ? NE ? A ARG 190 NE 21 1 Y 1 A ARG 190 ? CZ ? A ARG 190 CZ 22 1 Y 1 A ARG 190 ? NH1 ? A ARG 190 NH1 23 1 Y 1 A ARG 190 ? NH2 ? A ARG 190 NH2 24 1 Y 1 A ARG 193 ? CG ? A ARG 193 CG 25 1 Y 1 A ARG 193 ? CD ? A ARG 193 CD 26 1 Y 1 A ARG 193 ? NE ? A ARG 193 NE 27 1 Y 1 A ARG 193 ? CZ ? A ARG 193 CZ 28 1 Y 1 A ARG 193 ? NH1 ? A ARG 193 NH1 29 1 Y 1 A ARG 193 ? NH2 ? A ARG 193 NH2 30 1 Y 1 A GLN 232 ? CG ? A GLN 232 CG 31 1 Y 1 A GLN 232 ? CD ? A GLN 232 CD 32 1 Y 1 A GLN 232 ? OE1 ? A GLN 232 OE1 33 1 Y 1 A GLN 232 ? NE2 ? A GLN 232 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 71 ? A HIS 71 2 1 Y 1 A LEU 72 ? A LEU 72 3 1 Y 1 A GLY 110 ? A GLY 110 4 1 Y 1 A ILE 111 ? A ILE 111 5 1 Y 1 A GLY 112 ? A GLY 112 6 1 Y 1 A LYS 113 ? A LYS 113 7 1 Y 1 A LYS 114 ? A LYS 114 8 1 Y 1 A ASP 264 ? A ASP 264 9 1 Y 1 A LEU 265 ? A LEU 265 10 1 Y 1 A GLU 266 ? A GLU 266 11 1 Y 1 A HIS 267 ? A HIS 267 12 1 Y 1 A HIS 268 ? A HIS 268 13 1 Y 1 A HIS 269 ? A HIS 269 14 1 Y 1 A HIS 270 ? A HIS 270 15 1 Y 1 A HIS 271 ? A HIS 271 16 1 Y 1 A HIS 272 ? A HIS 272 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE ; A22 3 'CITRIC ACID' CIT 4 water HOH #