HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-AUG-06 2I2O TITLE CRYSTAL STRUCTURE OF AN EIF4G-LIKE PROTEIN FROM DANIO RERIO COMPND MOL_ID: 1; COMPND 2 MOLECULE: EIF4G-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: DR.38751 (BC090306); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 33K KEYWDS EIF4G-LIKE PROTEIN, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 2 EUKARYOTIC STRUCTURAL GENOMICS, CESG, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.BITTO,G.E.WESENBERG,G.N.PHILLIPS JR.,J.G.MCCOY,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 02-JUN-10 2I2O 1 JRNL SEQADV REVDAT 3 14-APR-10 2I2O 1 JRNL REVDAT 2 24-FEB-09 2I2O 1 VERSN REVDAT 1 29-AUG-06 2I2O 0 JRNL AUTH E.BAE,E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG, JRNL AUTH 2 G.N.PHILLIPS JRNL TITL CRYSTAL STRUCTURE OF AN EIF4G-LIKE PROTEIN FROM DANIO JRNL TITL 2 RERIO. JRNL REF PROTEINS V. 78 1803 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20229607 JRNL DOI 10.1002/PROT.22703 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.024 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77100 REMARK 3 B22 (A**2) : -0.23700 REMARK 3 B33 (A**2) : -0.53700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3533 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4763 ; 1.357 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;37.124 ;24.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;15.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2636 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1838 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2491 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.135 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.337 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2190 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3420 ; 1.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1513 ; 2.001 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1341 ; 2.991 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 217 4 REMARK 3 1 B 9 B 217 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1715 ; 0.270 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1715 ; 0.520 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I2O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB039060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI (220) REMARK 200 DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 SECOND BENT MONOCHROMATOR REMARK 200 CRYSTAL, VERTICAL BENT FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 40.612 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3770 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.769 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (HYSS), SHARP, DM, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML PROTEIN, REMARK 280 0.050 M SODIUM CHLORIDE, 0.003 M SODIUM AZIDE, 0.0003 M TCEP, REMARK 280 0.005 M BISTRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (7% PEG 4K, 0.40 M SODIUM CHLORIDE, 0.1 M MES/ACETATE PH REMARK 280 5.5) CRYOPROTECTED WITH 10% PEG 4K, 0.1 M MES/ACETATE PH 5.5, 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 158.89800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.47400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 158.89800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.47400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 ILE A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 SER A 218 REMARK 465 GLU A 219 REMARK 465 VAL A 220 REMARK 465 THR A 221 REMARK 465 ASP A 222 REMARK 465 ALA B -1 REMARK 465 ILE B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 SER B 218 REMARK 465 GLU B 219 REMARK 465 VAL B 220 REMARK 465 THR B 221 REMARK 465 ASP B 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 616 O HOH B 714 2.02 REMARK 500 O HOH B 712 O HOH B 713 2.12 REMARK 500 O HOH A 618 O HOH A 627 2.15 REMARK 500 O HOH A 566 O HOH A 654 2.17 REMARK 500 NE2 GLN B 99 OE2 GLU B 146 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 147.33 -39.28 REMARK 500 SER A 97 115.06 -162.04 REMARK 500 ASN A 118 -125.64 77.17 REMARK 500 ASN A 166 91.41 -171.07 REMARK 500 ASP A 186 47.76 -91.04 REMARK 500 ASN B 118 -139.08 71.49 REMARK 500 ASP B 186 44.16 -84.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 118 ASN B 119 148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 186 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 119 O REMARK 620 2 ASN A 119 OD1 102.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 119 OD1 REMARK 620 2 ASN B 119 O 90.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.79294 RELATED DB: TARGETDB DBREF 2I2O A 2 222 UNP Q5EAQ1 Q5EAQ1_BRARE 2 222 DBREF 2I2O B 2 222 UNP Q5EAQ1 Q5EAQ1_BRARE 2 222 SEQADV 2I2O ALA A -1 UNP Q5EAQ1 CLONING ARTIFACT SEQADV 2I2O ILE A 0 UNP Q5EAQ1 CLONING ARTIFACT SEQADV 2I2O ALA A 1 UNP Q5EAQ1 CLONING ARTIFACT SEQADV 2I2O ALA B -1 UNP Q5EAQ1 CLONING ARTIFACT SEQADV 2I2O ILE B 0 UNP Q5EAQ1 CLONING ARTIFACT SEQADV 2I2O ALA B 1 UNP Q5EAQ1 CLONING ARTIFACT SEQRES 1 A 224 ALA ILE ALA GLU ASN SER SER LYS GLU ASP TYR LYS ILE SEQRES 2 A 224 GLN SER PHE ASP LEU GLU THR GLN LYS LEU LEU LYS THR SEQRES 3 A 224 ALA LEU LYS ASP PRO GLY SER VAL ASP LEU GLU LYS VAL SEQRES 4 A 224 SER SER VAL ILE VAL ASP GLN SER LEU LYS ASP GLN VAL SEQRES 5 A 224 PHE SER ARG GLU ALA GLY ARG ILE CYS TYR THR ILE VAL SEQRES 6 A 224 GLN ALA GLU ALA LYS GLN THR ASN GLY SER VAL PHE ARG SEQRES 7 A 224 ARG ASN LEU LEU ASN ARG LEU GLN GLN GLU PHE LYS ALA SEQRES 8 A 224 ARG GLU GLU THR ARG LYS ARG SER THR GLN GLU TRP VAL SEQRES 9 A 224 CYS LEU VAL SER PHE ILE CYS ASN ILE PHE ASP TYR LEU SEQRES 10 A 224 LYS VAL ASN ASN MSE PRO MSE VAL ALA LEU VAL HIS PRO SEQRES 11 A 224 VAL TYR ASP CYS LEU PHE ARG LEU ALA GLN SER ASP ALA SEQRES 12 A 224 LEU LYS ASN GLU GLU GLU VAL ASP CYS LEU VAL LEU GLN SEQRES 13 A 224 LEU HIS ARG ILE GLY ASP GLN LEU GLU LYS MSE ASN VAL SEQRES 14 A 224 GLN LEU MSE ASP GLU LEU PHE ASN LEU LEU ARG ASP GLY SEQRES 15 A 224 PHE LEU LEU GLN GLU ASP LEU SER SER MSE GLY ARG LEU SEQRES 16 A 224 LEU LEU LEU GLU ILE LEU GLU PHE ARG ALA GLY GLY TRP SEQRES 17 A 224 LYS LEU SER ASP THR ALA GLN LYS TYR TYR TYR SER GLU SEQRES 18 A 224 VAL THR ASP SEQRES 1 B 224 ALA ILE ALA GLU ASN SER SER LYS GLU ASP TYR LYS ILE SEQRES 2 B 224 GLN SER PHE ASP LEU GLU THR GLN LYS LEU LEU LYS THR SEQRES 3 B 224 ALA LEU LYS ASP PRO GLY SER VAL ASP LEU GLU LYS VAL SEQRES 4 B 224 SER SER VAL ILE VAL ASP GLN SER LEU LYS ASP GLN VAL SEQRES 5 B 224 PHE SER ARG GLU ALA GLY ARG ILE CYS TYR THR ILE VAL SEQRES 6 B 224 GLN ALA GLU ALA LYS GLN THR ASN GLY SER VAL PHE ARG SEQRES 7 B 224 ARG ASN LEU LEU ASN ARG LEU GLN GLN GLU PHE LYS ALA SEQRES 8 B 224 ARG GLU GLU THR ARG LYS ARG SER THR GLN GLU TRP VAL SEQRES 9 B 224 CYS LEU VAL SER PHE ILE CYS ASN ILE PHE ASP TYR LEU SEQRES 10 B 224 LYS VAL ASN ASN MSE PRO MSE VAL ALA LEU VAL HIS PRO SEQRES 11 B 224 VAL TYR ASP CYS LEU PHE ARG LEU ALA GLN SER ASP ALA SEQRES 12 B 224 LEU LYS ASN GLU GLU GLU VAL ASP CYS LEU VAL LEU GLN SEQRES 13 B 224 LEU HIS ARG ILE GLY ASP GLN LEU GLU LYS MSE ASN VAL SEQRES 14 B 224 GLN LEU MSE ASP GLU LEU PHE ASN LEU LEU ARG ASP GLY SEQRES 15 B 224 PHE LEU LEU GLN GLU ASP LEU SER SER MSE GLY ARG LEU SEQRES 16 B 224 LEU LEU LEU GLU ILE LEU GLU PHE ARG ALA GLY GLY TRP SEQRES 17 B 224 LYS LEU SER ASP THR ALA GLN LYS TYR TYR TYR SER GLU SEQRES 18 B 224 VAL THR ASP MODRES 2I2O MSE A 120 MET SELENOMETHIONINE MODRES 2I2O MSE A 122 MET SELENOMETHIONINE MODRES 2I2O MSE A 165 MET SELENOMETHIONINE MODRES 2I2O MSE A 170 MET SELENOMETHIONINE MODRES 2I2O MSE A 190 MET SELENOMETHIONINE MODRES 2I2O MSE B 120 MET SELENOMETHIONINE MODRES 2I2O MSE B 122 MET SELENOMETHIONINE MODRES 2I2O MSE B 165 MET SELENOMETHIONINE MODRES 2I2O MSE B 170 MET SELENOMETHIONINE MODRES 2I2O MSE B 190 MET SELENOMETHIONINE HET MSE A 120 8 HET MSE A 122 8 HET MSE A 165 16 HET MSE A 170 8 HET MSE A 190 8 HET MSE B 120 8 HET MSE B 122 8 HET MSE B 165 16 HET MSE B 170 8 HET MSE B 190 8 HET NI B 501 1 HET NI A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *418(H2 O) HELIX 1 1 ASP A 15 ASP A 28 1 14 HELIX 2 2 PRO A 29 VAL A 32 5 4 HELIX 3 3 ASP A 33 LEU A 46 1 14 HELIX 4 4 ASP A 48 ALA A 55 1 8 HELIX 5 5 ALA A 55 ASN A 71 1 17 HELIX 6 6 SER A 73 ALA A 89 1 17 HELIX 7 7 ALA A 89 SER A 97 1 9 HELIX 8 8 SER A 97 LEU A 115 1 19 HELIX 9 9 MSE A 122 ALA A 124 5 3 HELIX 10 10 LEU A 125 ALA A 137 1 13 HELIX 11 11 GLN A 138 LYS A 143 1 6 HELIX 12 12 ASN A 144 ASN A 166 1 23 HELIX 13 13 ASN A 166 GLN A 184 1 19 HELIX 14 14 SER A 188 GLY A 204 1 17 HELIX 15 15 SER A 209 TYR A 217 1 9 HELIX 16 16 ASP B 15 ASP B 28 1 14 HELIX 17 17 PRO B 29 VAL B 32 5 4 HELIX 18 18 ASP B 33 LEU B 46 1 14 HELIX 19 19 ASP B 48 ALA B 55 1 8 HELIX 20 20 ALA B 55 ASN B 71 1 17 HELIX 21 21 SER B 73 ALA B 89 1 17 HELIX 22 22 ALA B 89 SER B 97 1 9 HELIX 23 23 SER B 97 LEU B 115 1 19 HELIX 24 24 MSE B 122 ALA B 124 5 3 HELIX 25 25 LEU B 125 ALA B 137 1 13 HELIX 26 26 GLN B 138 LYS B 143 1 6 HELIX 27 27 ASN B 144 ASN B 166 1 23 HELIX 28 28 ASN B 166 LEU B 183 1 18 HELIX 29 29 SER B 188 GLY B 204 1 17 HELIX 30 30 SER B 209 TYR B 217 1 9 LINK C ASN A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N PRO A 121 1555 1555 1.34 LINK C PRO A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N VAL A 123 1555 1555 1.33 LINK C LYS A 164 N AMSE A 165 1555 1555 1.34 LINK C LYS A 164 N BMSE A 165 1555 1555 1.33 LINK C AMSE A 165 N ASN A 166 1555 1555 1.35 LINK C BMSE A 165 N ASN A 166 1555 1555 1.32 LINK C LEU A 169 N MSE A 170 1555 1555 1.34 LINK C MSE A 170 N ASP A 171 1555 1555 1.34 LINK C SER A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N GLY A 191 1555 1555 1.34 LINK NI NI A 502 O ASN A 119 1555 1555 2.37 LINK NI NI A 502 OD1 ASN A 119 1555 1555 1.83 LINK C ASN B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N PRO B 121 1555 1555 1.35 LINK C PRO B 121 N MSE B 122 1555 1555 1.33 LINK C MSE B 122 N VAL B 123 1555 1555 1.33 LINK C LYS B 164 N BMSE B 165 1555 1555 1.34 LINK C LYS B 164 N AMSE B 165 1555 1555 1.32 LINK C BMSE B 165 N ASN B 166 1555 1555 1.34 LINK C AMSE B 165 N ASN B 166 1555 1555 1.32 LINK C LEU B 169 N MSE B 170 1555 1555 1.34 LINK C MSE B 170 N ASP B 171 1555 1555 1.34 LINK C SER B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N GLY B 191 1555 1555 1.33 LINK NI NI B 501 OD1 ASN B 119 1555 1555 1.73 LINK NI NI B 501 O ASN B 119 1555 1555 2.39 SITE 1 AC1 2 ASN B 119 MSE B 120 SITE 1 AC2 2 ASN A 119 MSE A 120 CRYST1 317.796 40.948 40.917 90.00 90.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003150 0.000000 0.000010 0.00000 SCALE2 0.000000 0.024420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024440 0.00000