HEADER VIRAL PROTEIN 16-AUG-06 2I2S TITLE CRYSTAL STRUCTURE OF THE PORCINE CRW-8 ROTAVIRUS VP8* CARBOHYDRATE- TITLE 2 RECOGNISING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VP8* DOMAIN; COMPND 5 SYNONYM: SPIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ROTAVIRUS; SOURCE 3 ORGANISM_TAXID: 10913; SOURCE 4 STRAIN: STRAIN CRW-8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-VP8*(64-224) KEYWDS BETA-SANDWICH, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.BLANCHARD REVDAT 6 03-APR-24 2I2S 1 REMARK REVDAT 5 13-MAR-24 2I2S 1 HETSYN REVDAT 4 29-JUL-20 2I2S 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 2I2S 1 VERSN REVDAT 2 24-FEB-09 2I2S 1 VERSN REVDAT 1 03-APR-07 2I2S 0 JRNL AUTH H.BLANCHARD,X.YU,B.S.COULSON,M.VON ITZSTEIN JRNL TITL INSIGHT INTO HOST CELL CARBOHYDRATE-RECOGNITION BY HUMAN AND JRNL TITL 2 PORCINE ROTAVIRUS FROM CRYSTAL STRUCTURES OF THE VIRION JRNL TITL 3 SPIKE ASSOCIATED CARBOHYDRATE-BINDING DOMAIN (VP8*) JRNL REF J.MOL.BIOL. V. 367 1215 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17306299 JRNL DOI 10.1016/J.JMB.2007.01.028 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.A.SCOTT,G.HOLLOWAY,B.S.COULSON,A.J.SZYCZEW,M.J.KIEFEL, REMARK 1 AUTH 2 M.VON ITZSTEIN,H.BLANCHARD REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF THE SIALIC ACID-BINDING DOMAIN (VP8*) OF PORCINE REMARK 1 TITL 3 ROTAVIRUS STRAIN CRW-8 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 617 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511112 REMARK 1 DOI 10.1107/S1744309105013849 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1212 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2796 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3842 ; 1.060 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.637 ;24.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;12.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2098 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1241 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1926 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.080 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2704 ; 0.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 0.892 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1138 ; 1.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HOMOLOGY MODEL BASED ON THE STRUCTURE OF RHESUS REMARK 200 ROTAVIRUS VP8* REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, 0.1M HEPES PH 7.5, METHYL REMARK 280 -ALPHA-D-N-ACETYLNEURAMINIDE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.96450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.94300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.33150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.94300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.96450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.33150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER OF VP8* WHICH FORMS PART REMARK 300 OF THE ROTAVIRUS SPIKE PROTEIN (VP4). THE SPIKE PROTEIN IS REMARK 300 CONSIDERED TO BE FORMED OF A DIMER (THOUGH SOME EVIDENCE SUGGESTS A REMARK 300 TRIMER) OF VP4. THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS TWO REMARK 300 MOLECULES OF VP8*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 99 -64.62 -124.21 REMARK 500 ASP A 100 15.01 -145.98 REMARK 500 SER A 171 68.88 23.63 REMARK 500 THR B 87 -70.71 -117.11 REMARK 500 ILE B 99 -62.28 -123.32 REMARK 500 ASP B 100 18.71 -156.88 REMARK 500 ASN B 111 64.95 66.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A6000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 GLY A 156 O 100.3 REMARK 620 3 TYR A 165 OH 77.2 122.2 REMARK 620 4 THR A 176 OG1 64.7 152.5 78.6 REMARK 620 5 TYR A 177 O 156.0 103.6 88.1 94.1 REMARK 620 6 HOH A6006 O 84.2 99.4 136.6 57.9 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B6001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 142 OD2 REMARK 620 2 GLY B 156 O 96.6 REMARK 620 3 TYR B 165 OH 76.9 116.7 REMARK 620 4 THR B 176 OG1 66.1 152.2 81.9 REMARK 620 5 TYR B 177 O 162.1 100.2 89.9 100.4 REMARK 620 6 HOH B6055 O 86.4 96.7 143.9 62.1 97.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DWR RELATED DB: PDB DBREF 2I2S A 64 224 UNP P11114 VP4_ROTP5 64 224 DBREF 2I2S B 64 224 UNP P11114 VP4_ROTP5 64 224 SEQRES 1 A 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 A 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 A 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 A 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 A 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 A 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 A 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 A 163 THR GLN HIS GLY SER LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 A 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 A 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 A 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 A 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 A 163 GLU TYR ILE ASN HIS GLY LEU SEQRES 1 B 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 B 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 B 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 B 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 B 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 B 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 B 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 B 163 THR GLN HIS GLY SER LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 B 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 B 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 B 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 B 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 B 163 GLU TYR ILE ASN HIS GLY LEU HET SO4 A3000 5 HET NA A6000 1 HET MNA A1000 22 HET MNA A1001 22 HET MPD A5001 8 HET SO4 B3001 5 HET NA B6001 1 HET MNA B1002 22 HET GOL B4000 6 HET GOL B4001 6 HET MPD B5000 8 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM MNA 2-O-METHYL-5-N-ACETYL-ALPHA-D-NEURAMINIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN MNA 2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NA 2(NA 1+) FORMUL 5 MNA 3(C12 H21 N O9) FORMUL 7 MPD 2(C6 H14 O2) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 14 HOH *363(H2 O) HELIX 1 1 ASN A 193 VAL A 197 5 5 HELIX 2 2 GLN A 212 GLY A 223 1 12 HELIX 3 3 ASN B 193 VAL B 197 5 5 HELIX 4 4 GLN B 212 GLY B 223 1 12 SHEET 1 A11 ASP A 66 TYR A 69 0 SHEET 2 A11 ASP A 204 PRO A 209 -1 O ILE A 207 N ASP A 66 SHEET 3 A11 TYR A 80 ALA A 85 -1 N TRP A 81 O ILE A 208 SHEET 4 A11 TYR A 165 PHE A 170 -1 O TYR A 165 N LEU A 84 SHEET 5 A11 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 A11 THR A 153 SER A 160 1 N PHE A 159 O GLY A 179 SHEET 7 A11 TRP A 138 LYS A 145 -1 N TRP A 138 O SER A 160 SHEET 8 A11 TRP A 102 ILE A 108 -1 N ALA A 104 O VAL A 143 SHEET 9 A11 GLY A 90 THR A 96 -1 N GLY A 95 O LEU A 103 SHEET 10 A11 ASN A 198 SER A 201 -1 O THR A 200 N GLN A 94 SHEET 11 A11 THR A 72 PHE A 74 -1 N PHE A 74 O MET A 199 SHEET 1 B 6 ASP A 66 TYR A 69 0 SHEET 2 B 6 ASP A 204 PRO A 209 -1 O ILE A 207 N ASP A 66 SHEET 3 B 6 TYR A 80 ALA A 85 -1 N TRP A 81 O ILE A 208 SHEET 4 B 6 TYR A 165 PHE A 170 -1 O TYR A 165 N LEU A 84 SHEET 5 B 6 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 B 6 THR A 185 SER A 190 -1 O GLY A 187 N THR A 176 SHEET 1 C 2 VAL A 112 LEU A 121 0 SHEET 2 C 2 GLN A 124 ASN A 132 -1 O VAL A 126 N TYR A 119 SHEET 1 D11 ASP B 66 TYR B 69 0 SHEET 2 D11 ASP B 204 PRO B 209 -1 O ILE B 207 N ASP B 66 SHEET 3 D11 TYR B 80 ALA B 85 -1 N TRP B 81 O ILE B 208 SHEET 4 D11 TYR B 165 PHE B 170 -1 O VAL B 167 N ILE B 82 SHEET 5 D11 ARG B 173 THR B 180 -1 O TYR B 175 N MET B 168 SHEET 6 D11 THR B 153 SER B 160 1 N PHE B 159 O GLY B 179 SHEET 7 D11 TRP B 138 LYS B 145 -1 N TRP B 138 O SER B 160 SHEET 8 D11 TRP B 102 ILE B 108 -1 N ALA B 104 O VAL B 143 SHEET 9 D11 GLY B 90 THR B 96 -1 N VAL B 92 O THR B 105 SHEET 10 D11 ASN B 198 SER B 201 -1 O THR B 200 N GLN B 94 SHEET 11 D11 THR B 72 PHE B 74 -1 N PHE B 74 O MET B 199 SHEET 1 E 6 ASP B 66 TYR B 69 0 SHEET 2 E 6 ASP B 204 PRO B 209 -1 O ILE B 207 N ASP B 66 SHEET 3 E 6 TYR B 80 ALA B 85 -1 N TRP B 81 O ILE B 208 SHEET 4 E 6 TYR B 165 PHE B 170 -1 O VAL B 167 N ILE B 82 SHEET 5 E 6 ARG B 173 THR B 180 -1 O TYR B 175 N MET B 168 SHEET 6 E 6 THR B 185 SER B 190 -1 O THR B 185 N ASN B 178 SHEET 1 F 2 VAL B 112 LEU B 121 0 SHEET 2 F 2 GLN B 124 ASN B 132 -1 O VAL B 126 N TYR B 119 LINK OD2 ASP A 142 NA NA A6000 1555 1555 2.42 LINK O GLY A 156 NA NA A6000 1555 1555 2.31 LINK OH TYR A 165 NA NA A6000 1555 1555 2.30 LINK OG1 THR A 176 NA NA A6000 1555 1555 2.75 LINK O TYR A 177 NA NA A6000 1555 1555 2.34 LINK NA NA A6000 O HOH A6006 1555 1555 2.52 LINK OD2 ASP B 142 NA NA B6001 1555 1555 2.43 LINK O GLY B 156 NA NA B6001 1555 1555 2.33 LINK OH TYR B 165 NA NA B6001 1555 1555 2.35 LINK OG1 THR B 176 NA NA B6001 1555 1555 2.76 LINK O TYR B 177 NA NA B6001 1555 1555 2.39 LINK NA NA B6001 O HOH B6055 1555 1555 2.54 CISPEP 1 GLY A 67 PRO A 68 0 3.74 CISPEP 2 THR A 181 PRO A 182 0 7.41 CISPEP 3 GLY B 67 PRO B 68 0 2.80 CISPEP 4 THR B 181 PRO B 182 0 4.83 CRYST1 53.929 64.663 109.886 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009100 0.00000