HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-AUG-06 2I3D TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION ATU1826, A PUTATIVE TITLE 2 ALPHA/BETA HYDROLASE FROM AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ATU1826; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGR_C_3351P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: ATU1826; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, APC5865, HYDROLASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2I3D 1 VERSN REVDAT 2 24-FEB-09 2I3D 1 VERSN REVDAT 1 19-SEP-06 2I3D 0 JRNL AUTH J.OSIPIUK,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN ATU1826, A JRNL TITL 2 PUTATIVE ALPHA/BETA HYDROLASE FROM AGROBACTERIUM JRNL TITL 3 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 53497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 513 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.20000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3730 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5090 ; 1.560 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 5.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;34.168 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;13.201 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2966 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1925 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2546 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 397 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.091 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 1.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3674 ; 2.145 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 4.064 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 4.615 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3910 ; 3.729 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 522 ; 6.210 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3605 ; 3.719 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB039085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53502 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 15.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES BUFFER, 0.4 M MAGNESIUM REMARK 280 CHLORIDE, 30% PEG 2000 MME, PH 6.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 LYS A 222 REMARK 465 ARG A 223 REMARK 465 ILE A 224 REMARK 465 ARG A 225 REMARK 465 GLY A 226 REMARK 465 SER A 227 REMARK 465 MSE B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 ARG B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 221 REMARK 465 LYS B 222 REMARK 465 ARG B 223 REMARK 465 ILE B 224 REMARK 465 ARG B 225 REMARK 465 GLY B 226 REMARK 465 SER B 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 611 O HOH A 833 1.81 REMARK 500 OE1 GLU A 162 O HOH A 855 2.16 REMARK 500 O HOH A 697 O HOH A 721 2.17 REMARK 500 O ALA B 220 O HOH B 796 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 804 O HOH B 652 1656 1.98 REMARK 500 O HOH A 804 O HOH B 693 1656 2.17 REMARK 500 O HOH A 672 O HOH B 706 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 67 -18.30 88.39 REMARK 500 SER A 108 -123.39 64.07 REMARK 500 SER B 67 -17.67 85.94 REMARK 500 SER B 108 -124.33 63.56 REMARK 500 ALA B 143 75.57 -152.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 811 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B 802 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH B 811 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH B 835 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B 854 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B 859 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 658 O REMARK 620 2 GLU A 218 OE2 91.0 REMARK 620 3 HOH A 654 O 89.9 85.6 REMARK 620 4 HOH A 753 O 89.8 173.7 88.1 REMARK 620 5 HOH A 744 O 176.6 92.3 91.5 87.1 REMARK 620 6 HOH B 744 O 90.9 95.2 178.9 91.0 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 708 O REMARK 620 2 HOH B 757 O 96.2 REMARK 620 3 HOH B 857 O 87.9 95.2 REMARK 620 4 HOH B 858 O 94.4 88.3 175.6 REMARK 620 5 GLU B 218 OE2 92.0 171.8 86.3 89.8 REMARK 620 6 HOH A 803 O 175.2 82.7 87.6 90.2 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5865 RELATED DB: TARGETDB DBREF 2I3D A 1 225 UNP Q8UED4 Q8UED4_AGRT5 1 225 DBREF 2I3D B 1 225 UNP Q8UED4 Q8UED4_AGRT5 1 225 SEQADV 2I3D MSE A -21 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY A -20 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER A -19 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER A -18 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -17 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -16 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -15 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -14 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -13 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A -12 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER A -11 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER A -10 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY A -9 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D ARG A -8 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLU A -7 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D ASN A -6 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D LEU A -5 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D TYR A -4 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D PHE A -3 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLN A -2 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY A -1 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS A 0 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D MSE A 1 UNP Q8UED4 MET 1 MODIFIED RESIDUE SEQADV 2I3D MSE A 41 UNP Q8UED4 MET 41 MODIFIED RESIDUE SEQADV 2I3D MSE A 115 UNP Q8UED4 MET 115 MODIFIED RESIDUE SEQADV 2I3D MSE A 119 UNP Q8UED4 MET 119 MODIFIED RESIDUE SEQADV 2I3D MSE A 128 UNP Q8UED4 MET 128 MODIFIED RESIDUE SEQADV 2I3D MSE A 200 UNP Q8UED4 MET 200 MODIFIED RESIDUE SEQADV 2I3D GLY A 226 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER A 227 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D MSE B -21 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY B -20 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER B -19 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER B -18 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -17 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -16 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -15 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -14 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -13 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B -12 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER B -11 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER B -10 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY B -9 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D ARG B -8 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLU B -7 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D ASN B -6 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D LEU B -5 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D TYR B -4 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D PHE B -3 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLN B -2 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D GLY B -1 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D HIS B 0 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D MSE B 1 UNP Q8UED4 MET 1 MODIFIED RESIDUE SEQADV 2I3D MSE B 41 UNP Q8UED4 MET 41 MODIFIED RESIDUE SEQADV 2I3D MSE B 115 UNP Q8UED4 MET 115 MODIFIED RESIDUE SEQADV 2I3D MSE B 119 UNP Q8UED4 MET 119 MODIFIED RESIDUE SEQADV 2I3D MSE B 128 UNP Q8UED4 MET 128 MODIFIED RESIDUE SEQADV 2I3D MSE B 200 UNP Q8UED4 MET 200 MODIFIED RESIDUE SEQADV 2I3D GLY B 226 UNP Q8UED4 CLONING ARTIFACT SEQADV 2I3D SER B 227 UNP Q8UED4 CLONING ARTIFACT SEQRES 1 A 249 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 249 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE PRO GLU VAL SEQRES 3 A 249 ILE PHE ASN GLY PRO ALA GLY ARG LEU GLU GLY ARG TYR SEQRES 4 A 249 GLN PRO SER LYS GLU LYS SER ALA PRO ILE ALA ILE ILE SEQRES 5 A 249 LEU HIS PRO HIS PRO GLN PHE GLY GLY THR MSE ASN ASN SEQRES 6 A 249 GLN ILE VAL TYR GLN LEU PHE TYR LEU PHE GLN LYS ARG SEQRES 7 A 249 GLY PHE THR THR LEU ARG PHE ASN PHE ARG SER ILE GLY SEQRES 8 A 249 ARG SER GLN GLY GLU PHE ASP HIS GLY ALA GLY GLU LEU SEQRES 9 A 249 SER ASP ALA ALA SER ALA LEU ASP TRP VAL GLN SER LEU SEQRES 10 A 249 HIS PRO ASP SER LYS SER CYS TRP VAL ALA GLY TYR SER SEQRES 11 A 249 PHE GLY ALA TRP ILE GLY MSE GLN LEU LEU MSE ARG ARG SEQRES 12 A 249 PRO GLU ILE GLU GLY PHE MSE SER ILE ALA PRO GLN PRO SEQRES 13 A 249 ASN THR TYR ASP PHE SER PHE LEU ALA PRO CYS PRO SER SEQRES 14 A 249 SER GLY LEU ILE ILE ASN GLY ASP ALA ASP LYS VAL ALA SEQRES 15 A 249 PRO GLU LYS ASP VAL ASN GLY LEU VAL GLU LYS LEU LYS SEQRES 16 A 249 THR GLN LYS GLY ILE LEU ILE THR HIS ARG THR LEU PRO SEQRES 17 A 249 GLY ALA ASN HIS PHE PHE ASN GLY LYS VAL ASP GLU LEU SEQRES 18 A 249 MSE GLY GLU CYS GLU ASP TYR LEU ASP ARG ARG LEU ASN SEQRES 19 A 249 GLY GLU LEU VAL PRO GLU PRO ALA ALA LYS ARG ILE ARG SEQRES 20 A 249 GLY SER SEQRES 1 B 249 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 249 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE PRO GLU VAL SEQRES 3 B 249 ILE PHE ASN GLY PRO ALA GLY ARG LEU GLU GLY ARG TYR SEQRES 4 B 249 GLN PRO SER LYS GLU LYS SER ALA PRO ILE ALA ILE ILE SEQRES 5 B 249 LEU HIS PRO HIS PRO GLN PHE GLY GLY THR MSE ASN ASN SEQRES 6 B 249 GLN ILE VAL TYR GLN LEU PHE TYR LEU PHE GLN LYS ARG SEQRES 7 B 249 GLY PHE THR THR LEU ARG PHE ASN PHE ARG SER ILE GLY SEQRES 8 B 249 ARG SER GLN GLY GLU PHE ASP HIS GLY ALA GLY GLU LEU SEQRES 9 B 249 SER ASP ALA ALA SER ALA LEU ASP TRP VAL GLN SER LEU SEQRES 10 B 249 HIS PRO ASP SER LYS SER CYS TRP VAL ALA GLY TYR SER SEQRES 11 B 249 PHE GLY ALA TRP ILE GLY MSE GLN LEU LEU MSE ARG ARG SEQRES 12 B 249 PRO GLU ILE GLU GLY PHE MSE SER ILE ALA PRO GLN PRO SEQRES 13 B 249 ASN THR TYR ASP PHE SER PHE LEU ALA PRO CYS PRO SER SEQRES 14 B 249 SER GLY LEU ILE ILE ASN GLY ASP ALA ASP LYS VAL ALA SEQRES 15 B 249 PRO GLU LYS ASP VAL ASN GLY LEU VAL GLU LYS LEU LYS SEQRES 16 B 249 THR GLN LYS GLY ILE LEU ILE THR HIS ARG THR LEU PRO SEQRES 17 B 249 GLY ALA ASN HIS PHE PHE ASN GLY LYS VAL ASP GLU LEU SEQRES 18 B 249 MSE GLY GLU CYS GLU ASP TYR LEU ASP ARG ARG LEU ASN SEQRES 19 B 249 GLY GLU LEU VAL PRO GLU PRO ALA ALA LYS ARG ILE ARG SEQRES 20 B 249 GLY SER MODRES 2I3D MSE A 41 MET SELENOMETHIONINE MODRES 2I3D MSE A 115 MET SELENOMETHIONINE MODRES 2I3D MSE A 119 MET SELENOMETHIONINE MODRES 2I3D MSE A 128 MET SELENOMETHIONINE MODRES 2I3D MSE A 200 MET SELENOMETHIONINE MODRES 2I3D MSE B 1 MET SELENOMETHIONINE MODRES 2I3D MSE B 41 MET SELENOMETHIONINE MODRES 2I3D MSE B 115 MET SELENOMETHIONINE MODRES 2I3D MSE B 119 MET SELENOMETHIONINE MODRES 2I3D MSE B 128 MET SELENOMETHIONINE MODRES 2I3D MSE B 200 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 115 13 HET MSE A 119 8 HET MSE A 128 8 HET MSE A 200 8 HET MSE B 1 8 HET MSE B 41 8 HET MSE B 115 13 HET MSE B 119 8 HET MSE B 128 8 HET MSE B 200 8 HET MG A 601 1 HET MG B 602 1 HET CL A 603 1 HET CL A 604 1 HET CL B 605 1 HET CL B 606 1 HET CL A 607 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 CL 5(CL 1-) FORMUL 10 HOH *513(H2 O) HELIX 1 1 HIS A 34 GLY A 38 5 5 HELIX 2 2 ASN A 43 ARG A 56 1 14 HELIX 3 3 GLY A 78 HIS A 96 1 19 HELIX 4 4 SER A 108 ARG A 121 1 14 HELIX 5 5 PRO A 161 LYS A 173 1 13 HELIX 6 6 LYS A 195 ASN A 212 1 18 HELIX 7 7 HIS B 34 GLY B 38 5 5 HELIX 8 8 ASN B 43 ARG B 56 1 14 HELIX 9 9 GLY B 78 HIS B 96 1 19 HELIX 10 10 SER B 108 ARG B 121 1 14 HELIX 11 11 PRO B 161 THR B 174 1 14 HELIX 12 12 LYS B 195 ASN B 212 1 18 SHEET 1 A 8 GLU A 3 GLY A 8 0 SHEET 2 A 8 GLY A 11 GLN A 18 -1 O GLY A 11 N GLY A 8 SHEET 3 A 8 THR A 59 PHE A 63 -1 O ARG A 62 N ARG A 16 SHEET 4 A 8 ILE A 27 LEU A 31 1 N ALA A 28 O THR A 59 SHEET 5 A 8 CYS A 102 TYR A 107 1 O ALA A 105 N LEU A 31 SHEET 6 A 8 ILE A 124 ILE A 130 1 O ILE A 130 N GLY A 106 SHEET 7 A 8 GLY A 149 GLY A 154 1 O LEU A 150 N SER A 129 SHEET 8 A 8 ILE A 180 LEU A 185 1 O THR A 181 N GLY A 149 SHEET 1 B 8 GLU B 3 GLY B 8 0 SHEET 2 B 8 GLY B 11 GLN B 18 -1 O GLY B 11 N GLY B 8 SHEET 3 B 8 THR B 59 PHE B 63 -1 O ARG B 62 N ARG B 16 SHEET 4 B 8 ILE B 27 LEU B 31 1 N ALA B 28 O THR B 59 SHEET 5 B 8 CYS B 102 TYR B 107 1 O TRP B 103 N ILE B 27 SHEET 6 B 8 ILE B 124 ILE B 130 1 O ILE B 130 N GLY B 106 SHEET 7 B 8 GLY B 149 GLY B 154 1 O LEU B 150 N SER B 129 SHEET 8 B 8 ILE B 180 LEU B 185 1 O LEU B 185 N ASN B 153 LINK C THR A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N ASN A 42 1555 1555 1.34 LINK C GLY A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N GLN A 116 1555 1555 1.34 LINK C LEU A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N ARG A 120 1555 1555 1.33 LINK C PHE A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N SER A 129 1555 1555 1.34 LINK C LEU A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N GLY A 201 1555 1555 1.33 LINK MG MG A 601 O HOH A 658 1555 1555 2.08 LINK MG MG A 601 OE2 GLU A 218 1555 1555 2.11 LINK MG MG A 601 O HOH A 654 1555 1555 2.08 LINK MG MG A 601 O HOH A 753 1555 1555 2.01 LINK MG MG A 601 O HOH A 744 1555 1555 2.01 LINK C MSE B 1 N PRO B 2 1555 1555 1.35 LINK C THR B 40 N MSE B 41 1555 1555 1.32 LINK C MSE B 41 N ASN B 42 1555 1555 1.33 LINK C GLY B 114 N MSE B 115 1555 1555 1.32 LINK C MSE B 115 N GLN B 116 1555 1555 1.34 LINK C LEU B 118 N MSE B 119 1555 1555 1.32 LINK C MSE B 119 N ARG B 120 1555 1555 1.34 LINK C PHE B 127 N MSE B 128 1555 1555 1.34 LINK C MSE B 128 N SER B 129 1555 1555 1.34 LINK C LEU B 199 N MSE B 200 1555 1555 1.33 LINK C MSE B 200 N GLY B 201 1555 1555 1.33 LINK MG MG B 602 O HOH B 708 1555 1555 2.19 LINK MG MG B 602 O HOH B 757 1555 1555 1.90 LINK MG MG B 602 O HOH B 857 1555 1555 2.29 LINK MG MG B 602 O HOH B 858 1555 1555 2.00 LINK MG MG B 602 OE2 GLU B 218 1555 1555 2.22 LINK MG MG A 601 O HOH B 744 1555 1556 2.11 LINK MG MG B 602 O HOH A 803 1555 1454 2.06 CISPEP 1 ALA A 143 PRO A 144 0 -12.30 CISPEP 2 MSE B 1 PRO B 2 0 10.28 CISPEP 3 ALA B 143 PRO B 144 0 2.60 SITE 1 AC1 6 GLU A 218 HOH A 654 HOH A 658 HOH A 744 SITE 2 AC1 6 HOH A 753 HOH B 744 SITE 1 AC2 6 HOH A 803 GLU B 218 HOH B 708 HOH B 757 SITE 2 AC2 6 HOH B 857 HOH B 858 SITE 1 AC3 4 LYS A 158 ASN A 189 HIS A 190 HOH B 832 SITE 1 AC4 6 HIS A 77 TRP A 112 TYR A 137 ASP A 138 SITE 2 AC4 6 HOH A 663 LYS B 173 SITE 1 AC5 4 LYS B 158 ASN B 189 HIS B 190 HOH B 812 SITE 1 AC6 6 LYS A 173 HIS B 77 TRP B 112 TYR B 137 SITE 2 AC6 6 ASP B 138 HOH B 687 SITE 1 AC7 4 GLN A 44 ASN B 43 GLN B 44 HOH B 647 CRYST1 46.549 50.579 54.844 92.25 115.17 99.82 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021483 0.003720 0.010643 0.00000 SCALE2 0.000000 0.020065 0.002534 0.00000 SCALE3 0.000000 0.000000 0.020306 0.00000