HEADER OXIDOREDUCTASE 18-AUG-06 2I3G TITLE CRYSTAL STRUCTURE OF N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE TITLE 2 (RV1652) FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH NADP+. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGPR, N- ACETYL-GLUTAMATE SEMIALDEHYDE DEHYDROGENASE, NAGSA COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.38; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ARGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15-1652 KEYWDS DIMER INTERFACE BETA SANDWICH, DIMER, ROSSMANN FOLD, STRUCTURAL KEYWDS 2 GENOMICS, MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT, KEYWDS 3 XMTB, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,F.MORAIDIN,M.N.G.JAMES, AUTHOR 2 MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT (XMTB),TB AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 8 30-AUG-23 2I3G 1 REMARK REVDAT 7 13-JUL-11 2I3G 1 VERSN REVDAT 6 24-FEB-09 2I3G 1 VERSN REVDAT 5 10-APR-07 2I3G 1 REMARK REVDAT 4 03-APR-07 2I3G 1 JRNL REVDAT 3 26-SEP-06 2I3G 3 ATOM REMARK REVDAT 2 12-SEP-06 2I3G 3 ATOM REVDAT 1 05-SEP-06 2I3G 0 JRNL AUTH L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,C.NIU,F.MORADIAN, JRNL AUTH 2 M.N.G.JAMES JRNL TITL CRYSTAL STRUCTURE OF N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE JRNL TITL 2 REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH JRNL TITL 3 NADP(+). JRNL REF J.MOL.BIOL. V. 367 1357 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17316682 JRNL DOI 10.1016/J.JMB.2007.01.033 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 56669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 688 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5309 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7287 ; 1.495 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 5.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;34.704 ;22.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;12.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.861 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4016 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2540 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3585 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 582 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 135 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3509 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5505 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 2.004 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1782 ; 3.219 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : SINGLE WAVELENGTH REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 10000, 0.1 M BIS-TRIS PH 5.5, REMARK 280 0.1 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT HAS BEEN CORRECTED BY TRANSLATING REMARK 300 CHAIN A WITH SYMMETRY OPERATOR -X,Y,-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 116.11 -162.33 REMARK 500 ALA A 48 -97.10 -103.52 REMARK 500 LEU A 62 58.35 -100.83 REMARK 500 ALA A 87 57.89 -113.97 REMARK 500 VAL A 322 -88.12 -102.39 REMARK 500 THR A 325 -91.55 -150.47 REMARK 500 ALA B 47 -149.28 -157.99 REMARK 500 ALA B 48 -104.71 -117.12 REMARK 500 LEU B 62 59.06 -97.89 REMARK 500 ALA B 87 57.66 -117.56 REMARK 500 VAL B 322 -86.09 -105.06 REMARK 500 THR B 325 -88.81 -149.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1652 RELATED DB: TARGETDB DBREF 2I3G A 1 352 UNP P63562 ARGC_MYCTU 1 352 DBREF 2I3G B 1 352 UNP P63562 ARGC_MYCTU 1 352 SEQRES 1 A 352 MET GLN ASN ARG GLN VAL ALA ASN ALA THR LYS VAL ALA SEQRES 2 A 352 VAL ALA GLY ALA SER GLY TYR ALA GLY GLY GLU ILE LEU SEQRES 3 A 352 ARG LEU LEU LEU GLY HIS PRO ALA TYR ALA ASP GLY ARG SEQRES 4 A 352 LEU ARG ILE GLY ALA LEU THR ALA ALA THR SER ALA GLY SEQRES 5 A 352 SER THR LEU GLY GLU HIS HIS PRO HIS LEU THR PRO LEU SEQRES 6 A 352 ALA HIS ARG VAL VAL GLU PRO THR GLU ALA ALA VAL LEU SEQRES 7 A 352 GLY GLY HIS ASP ALA VAL PHE LEU ALA LEU PRO HIS GLY SEQRES 8 A 352 HIS SER ALA VAL LEU ALA GLN GLN LEU SER PRO GLU THR SEQRES 9 A 352 LEU ILE ILE ASP CYS GLY ALA ASP PHE ARG LEU THR ASP SEQRES 10 A 352 ALA ALA VAL TRP GLU ARG PHE TYR GLY SER SER HIS ALA SEQRES 11 A 352 GLY SER TRP PRO TYR GLY LEU PRO GLU LEU PRO GLY ALA SEQRES 12 A 352 ARG ASP GLN LEU ARG GLY THR ARG ARG ILE ALA VAL PRO SEQRES 13 A 352 GLY CYS TYR PRO THR ALA ALA LEU LEU ALA LEU PHE PRO SEQRES 14 A 352 ALA LEU ALA ALA ASP LEU ILE GLU PRO ALA VAL THR VAL SEQRES 15 A 352 VAL ALA VAL SER GLY THR SER GLY ALA GLY ARG ALA ALA SEQRES 16 A 352 THR THR ASP LEU LEU GLY ALA GLU VAL ILE GLY SER ALA SEQRES 17 A 352 ARG ALA TYR ASN ILE ALA GLY VAL HIS ARG HIS THR PRO SEQRES 18 A 352 GLU ILE ALA GLN GLY LEU ARG ALA VAL THR ASP ARG ASP SEQRES 19 A 352 VAL SER VAL SER PHE THR PRO VAL LEU ILE PRO ALA SER SEQRES 20 A 352 ARG GLY ILE LEU ALA THR CYS THR ALA ARG THR ARG SER SEQRES 21 A 352 PRO LEU SER GLN LEU ARG ALA ALA TYR GLU LYS ALA TYR SEQRES 22 A 352 HIS ALA GLU PRO PHE ILE TYR LEU MET PRO GLU GLY GLN SEQRES 23 A 352 LEU PRO ARG THR GLY ALA VAL ILE GLY SER ASN ALA ALA SEQRES 24 A 352 HIS ILE ALA VAL ALA VAL ASP GLU ASP ALA GLN THR PHE SEQRES 25 A 352 VAL ALA ILE ALA ALA ILE ASP ASN LEU VAL LYS GLY THR SEQRES 26 A 352 ALA GLY ALA ALA VAL GLN SER MET ASN LEU ALA LEU GLY SEQRES 27 A 352 TRP PRO GLU THR ASP GLY LEU SER VAL VAL GLY VAL ALA SEQRES 28 A 352 PRO SEQRES 1 B 352 MET GLN ASN ARG GLN VAL ALA ASN ALA THR LYS VAL ALA SEQRES 2 B 352 VAL ALA GLY ALA SER GLY TYR ALA GLY GLY GLU ILE LEU SEQRES 3 B 352 ARG LEU LEU LEU GLY HIS PRO ALA TYR ALA ASP GLY ARG SEQRES 4 B 352 LEU ARG ILE GLY ALA LEU THR ALA ALA THR SER ALA GLY SEQRES 5 B 352 SER THR LEU GLY GLU HIS HIS PRO HIS LEU THR PRO LEU SEQRES 6 B 352 ALA HIS ARG VAL VAL GLU PRO THR GLU ALA ALA VAL LEU SEQRES 7 B 352 GLY GLY HIS ASP ALA VAL PHE LEU ALA LEU PRO HIS GLY SEQRES 8 B 352 HIS SER ALA VAL LEU ALA GLN GLN LEU SER PRO GLU THR SEQRES 9 B 352 LEU ILE ILE ASP CYS GLY ALA ASP PHE ARG LEU THR ASP SEQRES 10 B 352 ALA ALA VAL TRP GLU ARG PHE TYR GLY SER SER HIS ALA SEQRES 11 B 352 GLY SER TRP PRO TYR GLY LEU PRO GLU LEU PRO GLY ALA SEQRES 12 B 352 ARG ASP GLN LEU ARG GLY THR ARG ARG ILE ALA VAL PRO SEQRES 13 B 352 GLY CYS TYR PRO THR ALA ALA LEU LEU ALA LEU PHE PRO SEQRES 14 B 352 ALA LEU ALA ALA ASP LEU ILE GLU PRO ALA VAL THR VAL SEQRES 15 B 352 VAL ALA VAL SER GLY THR SER GLY ALA GLY ARG ALA ALA SEQRES 16 B 352 THR THR ASP LEU LEU GLY ALA GLU VAL ILE GLY SER ALA SEQRES 17 B 352 ARG ALA TYR ASN ILE ALA GLY VAL HIS ARG HIS THR PRO SEQRES 18 B 352 GLU ILE ALA GLN GLY LEU ARG ALA VAL THR ASP ARG ASP SEQRES 19 B 352 VAL SER VAL SER PHE THR PRO VAL LEU ILE PRO ALA SER SEQRES 20 B 352 ARG GLY ILE LEU ALA THR CYS THR ALA ARG THR ARG SER SEQRES 21 B 352 PRO LEU SER GLN LEU ARG ALA ALA TYR GLU LYS ALA TYR SEQRES 22 B 352 HIS ALA GLU PRO PHE ILE TYR LEU MET PRO GLU GLY GLN SEQRES 23 B 352 LEU PRO ARG THR GLY ALA VAL ILE GLY SER ASN ALA ALA SEQRES 24 B 352 HIS ILE ALA VAL ALA VAL ASP GLU ASP ALA GLN THR PHE SEQRES 25 B 352 VAL ALA ILE ALA ALA ILE ASP ASN LEU VAL LYS GLY THR SEQRES 26 B 352 ALA GLY ALA ALA VAL GLN SER MET ASN LEU ALA LEU GLY SEQRES 27 B 352 TRP PRO GLU THR ASP GLY LEU SER VAL VAL GLY VAL ALA SEQRES 28 B 352 PRO HET NAP A 500 48 HET BTB A 600 14 HET NAP B 500 48 HET BTB B 700 14 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN BTB BIS-TRIS BUFFER FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 BTB 2(C8 H19 N O5) FORMUL 7 HOH *688(H2 O) HELIX 1 1 GLY A 19 HIS A 32 1 14 HELIX 2 2 HIS A 32 ASP A 37 1 6 HELIX 3 3 THR A 54 HIS A 58 5 5 HELIX 4 4 LEU A 62 ALA A 66 5 5 HELIX 5 5 GLU A 74 GLY A 79 1 6 HELIX 6 6 HIS A 92 LEU A 100 1 9 HELIX 7 7 ASP A 117 GLY A 126 1 10 HELIX 8 8 GLY A 142 ARG A 148 1 7 HELIX 9 9 GLY A 157 ALA A 173 1 17 HELIX 10 10 THR A 188 GLY A 192 5 5 HELIX 11 11 THR A 196 LEU A 199 5 4 HELIX 12 12 LEU A 200 ILE A 205 1 6 HELIX 13 13 HIS A 219 ALA A 229 1 11 HELIX 14 14 PRO A 261 HIS A 274 1 14 HELIX 15 15 ARG A 289 VAL A 293 5 5 HELIX 16 16 THR A 325 GLY A 338 1 14 HELIX 17 17 GLY B 19 HIS B 32 1 14 HELIX 18 18 HIS B 32 ASP B 37 1 6 HELIX 19 19 THR B 54 HIS B 58 5 5 HELIX 20 20 LEU B 62 ALA B 66 5 5 HELIX 21 21 GLU B 74 GLY B 79 1 6 HELIX 22 22 HIS B 92 LEU B 100 1 9 HELIX 23 23 ASP B 117 GLY B 126 1 10 HELIX 24 24 GLY B 142 ARG B 148 1 7 HELIX 25 25 GLY B 157 ALA B 173 1 17 HELIX 26 26 THR B 188 GLY B 192 5 5 HELIX 27 27 THR B 196 LEU B 199 5 4 HELIX 28 28 LEU B 200 ILE B 205 1 6 HELIX 29 29 ARG B 218 ALA B 229 1 12 HELIX 30 30 PRO B 261 HIS B 274 1 14 HELIX 31 31 ARG B 289 VAL B 293 5 5 HELIX 32 32 THR B 325 GLY B 338 1 14 SHEET 1 A 6 GLU A 71 PRO A 72 0 SHEET 2 A 6 LEU A 40 ALA A 47 1 N LEU A 45 O GLU A 71 SHEET 3 A 6 THR A 10 ALA A 15 1 N VAL A 12 O GLY A 43 SHEET 4 A 6 ALA A 83 LEU A 86 1 O PHE A 85 N ALA A 15 SHEET 5 A 6 LEU A 105 ASP A 108 1 O ILE A 107 N LEU A 86 SHEET 6 A 6 ARG A 152 ALA A 154 1 O ILE A 153 N ASP A 108 SHEET 1 B 7 ARG A 209 ALA A 210 0 SHEET 2 B 7 SER A 236 LEU A 243 -1 O LEU A 243 N ARG A 209 SHEET 3 B 7 ALA A 179 SER A 186 1 N VAL A 182 O SER A 238 SHEET 4 B 7 ILE A 250 ARG A 257 -1 O THR A 255 N THR A 181 SHEET 5 B 7 THR A 311 ILE A 318 -1 O PHE A 312 N ALA A 256 SHEET 6 B 7 ALA A 299 ASP A 306 -1 N ASP A 306 O THR A 311 SHEET 7 B 7 ILE A 279 LEU A 281 1 N TYR A 280 O ALA A 299 SHEET 1 C 6 GLU B 71 PRO B 72 0 SHEET 2 C 6 LEU B 40 ALA B 47 1 N LEU B 45 O GLU B 71 SHEET 3 C 6 THR B 10 ALA B 15 1 N VAL B 12 O GLY B 43 SHEET 4 C 6 ALA B 83 LEU B 86 1 O PHE B 85 N ALA B 15 SHEET 5 C 6 LEU B 105 ASP B 108 1 O LEU B 105 N VAL B 84 SHEET 6 C 6 ARG B 152 ALA B 154 1 O ILE B 153 N ASP B 108 SHEET 1 D 7 ARG B 209 ALA B 210 0 SHEET 2 D 7 SER B 236 LEU B 243 -1 O LEU B 243 N ARG B 209 SHEET 3 D 7 ALA B 179 SER B 186 1 N VAL B 182 O SER B 238 SHEET 4 D 7 ILE B 250 ARG B 257 -1 O THR B 255 N THR B 181 SHEET 5 D 7 THR B 311 ILE B 318 -1 O PHE B 312 N ALA B 256 SHEET 6 D 7 ALA B 299 ASP B 306 -1 N ASP B 306 O THR B 311 SHEET 7 D 7 ILE B 279 LEU B 281 1 N TYR B 280 O ALA B 299 CISPEP 1 ALA A 351 PRO A 352 0 -2.76 CISPEP 2 ASN B 8 ALA B 9 0 -2.12 CISPEP 3 ALA B 351 PRO B 352 0 -4.97 SITE 1 AC1 33 GLY A 16 SER A 18 GLY A 19 TYR A 20 SITE 2 AC1 33 ALA A 21 ALA A 47 ALA A 48 THR A 49 SITE 3 AC1 33 SER A 50 THR A 73 ALA A 87 LEU A 88 SITE 4 AC1 33 PRO A 89 HIS A 90 HIS A 92 CYS A 109 SITE 5 AC1 33 GLY A 110 SER A 189 GLY A 190 GLY A 192 SITE 6 AC1 33 ARG A 193 ALA A 194 ASN A 320 LEU A 321 SITE 7 AC1 33 THR A 325 HOH A 755 HOH A 839 HOH A 840 SITE 8 AC1 33 HOH A 841 HOH A 844 HOH A 864 HOH A 865 SITE 9 AC1 33 HOH A 870 SITE 1 AC2 35 GLY B 16 SER B 18 GLY B 19 TYR B 20 SITE 2 AC2 35 ALA B 21 ALA B 47 ALA B 48 THR B 49 SITE 3 AC2 35 SER B 50 THR B 73 ALA B 87 LEU B 88 SITE 4 AC2 35 PRO B 89 HIS B 92 CYS B 109 GLY B 110 SITE 5 AC2 35 SER B 189 GLY B 190 GLY B 192 ARG B 193 SITE 6 AC2 35 ALA B 194 ASN B 320 LEU B 321 THR B 325 SITE 7 AC2 35 HOH B 778 HOH B 842 HOH B 878 HOH B 880 SITE 8 AC2 35 HOH B 881 HOH B 882 HOH B 883 HOH B 884 SITE 9 AC2 35 HOH B 888 HOH B 907 HOH B 910 SITE 1 AC3 8 HIS A 32 ALA A 34 ASP A 37 ARG A 39 SITE 2 AC3 8 TRP A 339 PRO A 340 ASP A 343 HOH A 921 SITE 1 AC4 8 HIS B 32 ALA B 34 ASP B 37 ARG B 39 SITE 2 AC4 8 TRP B 339 PRO B 340 ASP B 343 HOH B 972 CRYST1 141.456 78.214 88.034 90.00 127.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007069 0.000000 0.005417 0.00000 SCALE2 0.000000 0.012785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014310 0.00000 CONECT 5068 5069 5070 5071 5090 CONECT 5069 5068 CONECT 5070 5068 CONECT 5071 5068 5072 CONECT 5072 5071 5073 CONECT 5073 5072 5074 5075 CONECT 5074 5073 5079 CONECT 5075 5073 5076 5077 CONECT 5076 5075 CONECT 5077 5075 5078 5079 CONECT 5078 5077 5112 CONECT 5079 5074 5077 5080 CONECT 5080 5079 5081 5089 CONECT 5081 5080 5082 CONECT 5082 5081 5083 CONECT 5083 5082 5084 5089 CONECT 5084 5083 5085 5086 CONECT 5085 5084 CONECT 5086 5084 5087 CONECT 5087 5086 5088 CONECT 5088 5087 5089 CONECT 5089 5080 5083 5088 CONECT 5090 5068 5091 CONECT 5091 5090 5092 5093 5094 CONECT 5092 5091 CONECT 5093 5091 CONECT 5094 5091 5095 CONECT 5095 5094 5096 CONECT 5096 5095 5097 5098 CONECT 5097 5096 5102 CONECT 5098 5096 5099 5100 CONECT 5099 5098 CONECT 5100 5098 5101 5102 CONECT 5101 5100 CONECT 5102 5097 5100 5103 CONECT 5103 5102 5104 5111 CONECT 5104 5103 5105 CONECT 5105 5104 5106 5109 CONECT 5106 5105 5107 5108 CONECT 5107 5106 CONECT 5108 5106 CONECT 5109 5105 5110 CONECT 5110 5109 5111 CONECT 5111 5103 5110 CONECT 5112 5078 5113 5114 5115 CONECT 5113 5112 CONECT 5114 5112 CONECT 5115 5112 CONECT 5116 5117 5118 CONECT 5117 5116 CONECT 5118 5116 5119 5121 5123 CONECT 5119 5118 5120 CONECT 5120 5119 CONECT 5121 5118 5122 CONECT 5122 5121 CONECT 5123 5118 5124 5127 CONECT 5124 5123 5125 CONECT 5125 5124 5126 CONECT 5126 5125 CONECT 5127 5123 5128 CONECT 5128 5127 5129 CONECT 5129 5128 CONECT 5130 5131 5132 5133 5152 CONECT 5131 5130 CONECT 5132 5130 CONECT 5133 5130 5134 CONECT 5134 5133 5135 CONECT 5135 5134 5136 5137 CONECT 5136 5135 5141 CONECT 5137 5135 5138 5139 CONECT 5138 5137 CONECT 5139 5137 5140 5141 CONECT 5140 5139 5174 CONECT 5141 5136 5139 5142 CONECT 5142 5141 5143 5151 CONECT 5143 5142 5144 CONECT 5144 5143 5145 CONECT 5145 5144 5146 5151 CONECT 5146 5145 5147 5148 CONECT 5147 5146 CONECT 5148 5146 5149 CONECT 5149 5148 5150 CONECT 5150 5149 5151 CONECT 5151 5142 5145 5150 CONECT 5152 5130 5153 CONECT 5153 5152 5154 5155 5156 CONECT 5154 5153 CONECT 5155 5153 CONECT 5156 5153 5157 CONECT 5157 5156 5158 CONECT 5158 5157 5159 5160 CONECT 5159 5158 5164 CONECT 5160 5158 5161 5162 CONECT 5161 5160 CONECT 5162 5160 5163 5164 CONECT 5163 5162 CONECT 5164 5159 5162 5165 CONECT 5165 5164 5166 5173 CONECT 5166 5165 5167 CONECT 5167 5166 5168 5171 CONECT 5168 5167 5169 5170 CONECT 5169 5168 CONECT 5170 5168 CONECT 5171 5167 5172 CONECT 5172 5171 5173 CONECT 5173 5165 5172 CONECT 5174 5140 5175 5176 5177 CONECT 5175 5174 CONECT 5176 5174 CONECT 5177 5174 CONECT 5178 5179 5180 CONECT 5179 5178 CONECT 5180 5178 5181 5183 5185 CONECT 5181 5180 5182 CONECT 5182 5181 CONECT 5183 5180 5184 CONECT 5184 5183 CONECT 5185 5180 5186 5189 CONECT 5186 5185 5187 CONECT 5187 5186 5188 CONECT 5188 5187 CONECT 5189 5185 5190 CONECT 5190 5189 5191 CONECT 5191 5190 MASTER 325 0 4 32 26 0 22 6 5832 2 124 56 END