HEADER HYDROLASE 21-AUG-06 2I4E TITLE STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC TITLE 2 DOMAIN IN COMPLEX WITH INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1662-1973; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE BETA, R-PTP-BETA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRB, PTPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-HISMBP KEYWDS PROTEIN TYROSINE PHOSPHATASE, WPD-LOOP, SULFAMIC ACID, PHOSPHATASE, KEYWDS 2 INHIBITOR, DRUG DESIGN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,M.E.POKROSS,R.L.WALTER,M.MEKEL REVDAT 5 30-AUG-23 2I4E 1 REMARK SEQADV REVDAT 4 13-JUL-11 2I4E 1 VERSN REVDAT 3 24-FEB-09 2I4E 1 VERSN REVDAT 2 24-APR-07 2I4E 1 JRNL REVDAT 1 29-AUG-06 2I4E 0 JRNL AUTH A.G.EVDOKIMOV,M.POKROSS,R.WALTER,M.MEKEL,B.COX,C.LI, JRNL AUTH 2 R.BECHARD,F.GENBAUFFE,R.ANDREWS,C.DIVEN,B.HOWARD,V.RASTOGI, JRNL AUTH 3 J.GRAY,M.MAIER,K.G.PETERS JRNL TITL ENGINEERING THE CATALYTIC DOMAIN OF HUMAN PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE BETA FOR STRUCTURE-BASED DRUG DISCOVERY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1435 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 17139078 JRNL DOI 10.1107/S0907444906037784 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 59756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.904 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4758 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6463 ; 1.673 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;35.200 ;23.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;15.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;17.168 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3663 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2141 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3236 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2899 ; 1.856 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4608 ; 2.824 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 4.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1847 ; 5.941 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1678 A 1969 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0082 -11.8868 36.0600 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: -0.0126 REMARK 3 T33: -0.0157 T12: -0.0003 REMARK 3 T13: -0.0039 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4433 L22: 0.9794 REMARK 3 L33: 0.0353 L12: 0.0042 REMARK 3 L13: 0.0438 L23: 0.1266 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0041 S13: 0.0344 REMARK 3 S21: -0.0450 S22: 0.0018 S23: 0.0638 REMARK 3 S31: 0.0118 S32: -0.0056 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1678 B 1969 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9706 11.8435 2.7033 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: -0.0163 REMARK 3 T33: -0.0461 T12: 0.0130 REMARK 3 T13: 0.0183 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.4432 L22: 0.7671 REMARK 3 L33: 0.4411 L12: -0.0421 REMARK 3 L13: -0.1154 L23: -0.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.0413 S13: -0.0010 REMARK 3 S21: -0.0728 S22: 0.0100 S23: -0.0741 REMARK 3 S31: 0.0538 S32: 0.0565 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS GROUP WAS DEFINED OVER THE WHOLE REMARK 3 PROTEIN CHAIN REMARK 4 REMARK 4 2I4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : SI MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2I3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 220 MM MGCL2, 1% BME, REMARK 280 0.1% BOG, 5MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.86050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1661 REMARK 465 ASP A 1662 REMARK 465 ARG A 1663 REMARK 465 PRO A 1664 REMARK 465 LEU A 1665 REMARK 465 SER A 1666 REMARK 465 VAL A 1667 REMARK 465 HIS A 1668 REMARK 465 LEU A 1669 REMARK 465 ASN A 1670 REMARK 465 LEU A 1671 REMARK 465 GLY A 1672 REMARK 465 GLN A 1673 REMARK 465 LYS A 1674 REMARK 465 GLY A 1675 REMARK 465 ASN A 1676 REMARK 465 ARG A 1677 REMARK 465 VAL A 1749 REMARK 465 ASP A 1750 REMARK 465 ASP A 1751 REMARK 465 ASP A 1752 REMARK 465 PRO A 1753 REMARK 465 GLU A 1852 REMARK 465 GLN A 1853 REMARK 465 LEU A 1854 REMARK 465 ASP A 1855 REMARK 465 ALA A 1856 REMARK 465 HIS A 1857 REMARK 465 ARG A 1970 REMARK 465 SER A 1971 REMARK 465 GLU A 1972 REMARK 465 GLN A 1973 REMARK 465 SER B 1661 REMARK 465 ASP B 1662 REMARK 465 ARG B 1663 REMARK 465 PRO B 1664 REMARK 465 LEU B 1665 REMARK 465 SER B 1666 REMARK 465 VAL B 1667 REMARK 465 HIS B 1668 REMARK 465 LEU B 1669 REMARK 465 ASN B 1670 REMARK 465 LEU B 1671 REMARK 465 GLY B 1672 REMARK 465 GLN B 1673 REMARK 465 LYS B 1674 REMARK 465 GLY B 1675 REMARK 465 ASN B 1676 REMARK 465 ARG B 1677 REMARK 465 ASN B 1748 REMARK 465 VAL B 1749 REMARK 465 ASP B 1750 REMARK 465 ASP B 1751 REMARK 465 ASP B 1752 REMARK 465 PRO B 1753 REMARK 465 GLU B 1851 REMARK 465 GLU B 1852 REMARK 465 GLN B 1853 REMARK 465 LEU B 1854 REMARK 465 ASP B 1855 REMARK 465 ALA B 1856 REMARK 465 ARG B 1970 REMARK 465 SER B 1971 REMARK 465 GLU B 1972 REMARK 465 GLN B 1973 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 1720 O HOH B 95 2.02 REMARK 500 OE2 GLU A 1726 N CYS A 1754 2.13 REMARK 500 CD GLU A 1726 N CYS A 1754 2.15 REMARK 500 O HOH A 157 O HOH A 183 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1919 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET B1946 CG - SD - CE ANGL. DEV. = -22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1679 -21.90 79.05 REMARK 500 ASP A1819 -153.58 -143.05 REMARK 500 SER A1894 69.36 -116.02 REMARK 500 CYS A1904 -130.91 -126.55 REMARK 500 VAL A1908 -45.27 -131.48 REMARK 500 VAL A1947 88.56 68.52 REMARK 500 SER B1699 73.88 46.56 REMARK 500 ARG B1770 54.22 -115.45 REMARK 500 ASP B1819 -144.00 -141.15 REMARK 500 HIS B1871 19.39 55.09 REMARK 500 SER B1894 69.73 -118.18 REMARK 500 CYS B1904 -130.94 -129.27 REMARK 500 VAL B1947 87.02 64.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 1 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1904 SG REMARK 620 2 VO4 A 1 O1 97.6 REMARK 620 3 VO4 A 1 O2 91.1 117.4 REMARK 620 4 VO4 A 1 O3 87.3 116.8 125.5 REMARK 620 5 VO4 A 1 O4 174.4 87.4 88.7 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 B 2 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1904 SG REMARK 620 2 VO4 B 2 O1 85.3 REMARK 620 3 VO4 B 2 O2 95.5 119.0 REMARK 620 4 VO4 B 2 O3 90.3 123.7 117.3 REMARK 620 5 VO4 B 2 O4 171.4 88.2 92.6 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I3U RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC REMARK 900 DOMAIN IN COMPLEX WITH INHIBITORS REMARK 900 RELATED ID: 2I3R RELATED DB: PDB REMARK 900 ENGINEERED CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE HPTPBETA REMARK 900 RELATED ID: 2HC1 RELATED DB: PDB REMARK 900 ENGINEERED CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE HPTPBETA REMARK 900 RELATED ID: 2HC2 RELATED DB: PDB REMARK 900 ENGINEERED PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC DOMAIN REMARK 900 RELATED ID: 2I4G RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC REMARK 900 DOMAIN IN COMPLEX WITH A SULFAMIC ACID (SOAKING EXPERIMENT REMARK 900 RELATED ID: 2I4H RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC REMARK 900 DOMAIN CO-CRYSTALLIZED WITH A SULFAMIC ACID INHIBITOR DBREF 2I4E A 1662 1973 UNP P23467 PTPRB_HUMAN 1662 1973 DBREF 2I4E B 1662 1973 UNP P23467 PTPRB_HUMAN 1662 1973 SEQADV 2I4E SER A 1661 UNP P23467 CLONING ARTIFACT SEQADV 2I4E SER B 1661 UNP P23467 CLONING ARTIFACT SEQRES 1 A 313 SER ASP ARG PRO LEU SER VAL HIS LEU ASN LEU GLY GLN SEQRES 2 A 313 LYS GLY ASN ARG LYS THR SER CYS PRO ILE LYS ILE ASN SEQRES 3 A 313 GLN PHE GLU GLY HIS PHE MET LYS LEU GLN ALA ASP SER SEQRES 4 A 313 ASN TYR LEU LEU SER LYS GLU TYR GLU GLU LEU LYS ASP SEQRES 5 A 313 VAL GLY ARG ASN GLN SER CYS ASP ILE ALA LEU LEU PRO SEQRES 6 A 313 GLU ASN ARG GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO SEQRES 7 A 313 TYR ASP ALA THR ARG VAL LYS LEU SER ASN VAL ASP ASP SEQRES 8 A 313 ASP PRO CYS SER ASP TYR ILE ASN ALA SER TYR ILE PRO SEQRES 9 A 313 GLY ASN ASN PHE ARG ARG GLU TYR ILE VAL THR GLN GLY SEQRES 10 A 313 PRO LEU PRO GLY THR LYS ASP ASP PHE TRP LYS MET VAL SEQRES 11 A 313 TRP GLU GLN ASN VAL HIS ASN ILE VAL MET VAL THR GLN SEQRES 12 A 313 CYS VAL GLU LYS GLY ARG VAL LYS CYS ASP HIS TYR TRP SEQRES 13 A 313 PRO ALA ASP GLN ASP SER LEU TYR TYR GLY ASP LEU ILE SEQRES 14 A 313 LEU GLN MET LEU SER GLU SER VAL LEU PRO GLU TRP THR SEQRES 15 A 313 ILE ARG GLU PHE LYS ILE CYS GLY GLU GLU GLN LEU ASP SEQRES 16 A 313 ALA HIS ARG LEU ILE ARG HIS PHE HIS TYR THR VAL TRP SEQRES 17 A 313 PRO ASP HIS GLY VAL PRO GLU THR THR GLN SER LEU ILE SEQRES 18 A 313 GLN PHE VAL ARG THR VAL ARG ASP TYR ILE ASN ARG SER SEQRES 19 A 313 PRO GLY ALA GLY PRO THR VAL VAL HIS CYS SER ALA GLY SEQRES 20 A 313 VAL GLY ARG THR GLY THR PHE ILE ALA LEU ASP ARG ILE SEQRES 21 A 313 LEU GLN GLN LEU ASP SER LYS ASP SER VAL ASP ILE TYR SEQRES 22 A 313 GLY ALA VAL HIS ASP LEU ARG LEU HIS ARG VAL HIS MET SEQRES 23 A 313 VAL GLN THR GLU CYS GLN TYR VAL TYR LEU HIS GLN CYS SEQRES 24 A 313 VAL ARG ASP VAL LEU ARG ALA ARG LYS LEU ARG SER GLU SEQRES 25 A 313 GLN SEQRES 1 B 313 SER ASP ARG PRO LEU SER VAL HIS LEU ASN LEU GLY GLN SEQRES 2 B 313 LYS GLY ASN ARG LYS THR SER CYS PRO ILE LYS ILE ASN SEQRES 3 B 313 GLN PHE GLU GLY HIS PHE MET LYS LEU GLN ALA ASP SER SEQRES 4 B 313 ASN TYR LEU LEU SER LYS GLU TYR GLU GLU LEU LYS ASP SEQRES 5 B 313 VAL GLY ARG ASN GLN SER CYS ASP ILE ALA LEU LEU PRO SEQRES 6 B 313 GLU ASN ARG GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO SEQRES 7 B 313 TYR ASP ALA THR ARG VAL LYS LEU SER ASN VAL ASP ASP SEQRES 8 B 313 ASP PRO CYS SER ASP TYR ILE ASN ALA SER TYR ILE PRO SEQRES 9 B 313 GLY ASN ASN PHE ARG ARG GLU TYR ILE VAL THR GLN GLY SEQRES 10 B 313 PRO LEU PRO GLY THR LYS ASP ASP PHE TRP LYS MET VAL SEQRES 11 B 313 TRP GLU GLN ASN VAL HIS ASN ILE VAL MET VAL THR GLN SEQRES 12 B 313 CYS VAL GLU LYS GLY ARG VAL LYS CYS ASP HIS TYR TRP SEQRES 13 B 313 PRO ALA ASP GLN ASP SER LEU TYR TYR GLY ASP LEU ILE SEQRES 14 B 313 LEU GLN MET LEU SER GLU SER VAL LEU PRO GLU TRP THR SEQRES 15 B 313 ILE ARG GLU PHE LYS ILE CYS GLY GLU GLU GLN LEU ASP SEQRES 16 B 313 ALA HIS ARG LEU ILE ARG HIS PHE HIS TYR THR VAL TRP SEQRES 17 B 313 PRO ASP HIS GLY VAL PRO GLU THR THR GLN SER LEU ILE SEQRES 18 B 313 GLN PHE VAL ARG THR VAL ARG ASP TYR ILE ASN ARG SER SEQRES 19 B 313 PRO GLY ALA GLY PRO THR VAL VAL HIS CYS SER ALA GLY SEQRES 20 B 313 VAL GLY ARG THR GLY THR PHE ILE ALA LEU ASP ARG ILE SEQRES 21 B 313 LEU GLN GLN LEU ASP SER LYS ASP SER VAL ASP ILE TYR SEQRES 22 B 313 GLY ALA VAL HIS ASP LEU ARG LEU HIS ARG VAL HIS MET SEQRES 23 B 313 VAL GLN THR GLU CYS GLN TYR VAL TYR LEU HIS GLN CYS SEQRES 24 B 313 VAL ARG ASP VAL LEU ARG ALA ARG LYS LEU ARG SER GLU SEQRES 25 B 313 GLN HET VO4 A 1 5 HET VO4 B 2 5 HETNAM VO4 VANADATE ION FORMUL 3 VO4 2(O4 V 3-) FORMUL 5 HOH *276(H2 O) HELIX 1 1 GLN A 1687 LYS A 1711 1 25 HELIX 2 2 LEU A 1724 ASN A 1731 5 8 HELIX 3 3 TYR A 1739 ALA A 1741 5 3 HELIX 4 4 THR A 1782 GLN A 1793 1 12 HELIX 5 5 THR A 1876 ARG A 1893 1 18 HELIX 6 6 VAL A 1908 LYS A 1927 1 20 HELIX 7 7 ASP A 1931 ARG A 1943 1 13 HELIX 8 8 THR A 1949 LYS A 1968 1 20 HELIX 9 9 GLN B 1687 LEU B 1710 1 24 HELIX 10 10 LEU B 1724 ASN B 1731 5 8 HELIX 11 11 TYR B 1739 ALA B 1741 5 3 HELIX 12 12 THR B 1782 GLN B 1793 1 12 HELIX 13 13 THR B 1876 ARG B 1893 1 18 HELIX 14 14 VAL B 1908 LYS B 1927 1 20 HELIX 15 15 ASP B 1931 ARG B 1943 1 13 HELIX 16 16 THR B 1949 LEU B 1969 1 21 SHEET 1 A 2 ILE A1683 LYS A1684 0 SHEET 2 A 2 SER A1929 VAL A1930 -1 O VAL A1930 N ILE A1683 SHEET 1 B 9 ARG A1743 LYS A1745 0 SHEET 2 B 9 TYR A1757 ILE A1763 -1 O ALA A1760 N VAL A1744 SHEET 3 B 9 TYR A1772 THR A1775 -1 O TYR A1772 N ILE A1763 SHEET 4 B 9 THR A1900 HIS A1903 1 O VAL A1902 N ILE A1773 SHEET 5 B 9 ASN A1797 MET A1800 1 N VAL A1799 O VAL A1901 SHEET 6 B 9 LEU A1859 TYR A1865 1 O PHE A1863 N ILE A1798 SHEET 7 B 9 TRP A1841 CYS A1849 -1 N PHE A1846 O ILE A1860 SHEET 8 B 9 LEU A1828 VAL A1837 -1 N LEU A1833 O GLU A1845 SHEET 9 B 9 LEU A1823 TYR A1825 -1 N LEU A1823 O LEU A1830 SHEET 1 C 2 VAL A1805 GLU A1806 0 SHEET 2 C 2 ARG A1809 VAL A1810 -1 O ARG A1809 N GLU A1806 SHEET 1 D 2 ILE B1683 LYS B1684 0 SHEET 2 D 2 SER B1929 VAL B1930 -1 O VAL B1930 N ILE B1683 SHEET 1 E 9 ARG B1743 LYS B1745 0 SHEET 2 E 9 TYR B1757 ILE B1763 -1 O ALA B1760 N VAL B1744 SHEET 3 E 9 TYR B1772 THR B1775 -1 O VAL B1774 N SER B1761 SHEET 4 E 9 THR B1900 HIS B1903 1 O VAL B1902 N ILE B1773 SHEET 5 E 9 ASN B1797 MET B1800 1 N VAL B1799 O VAL B1901 SHEET 6 E 9 ARG B1858 TYR B1865 1 O PHE B1863 N ILE B1798 SHEET 7 E 9 TRP B1841 CYS B1849 -1 N THR B1842 O HIS B1864 SHEET 8 E 9 LEU B1828 VAL B1837 -1 N LEU B1833 O GLU B1845 SHEET 9 E 9 SER B1822 TYR B1825 -1 N TYR B1825 O LEU B1828 SHEET 1 F 2 VAL B1805 GLU B1806 0 SHEET 2 F 2 ARG B1809 VAL B1810 -1 O ARG B1809 N GLU B1806 LINK V VO4 A 1 SG CYS A1904 1555 1555 2.47 LINK V VO4 B 2 SG CYS B1904 1555 1555 2.47 SITE 1 AC1 11 HOH A 43 HOH A 155 ASP A1870 CYS A1904 SITE 2 AC1 11 SER A1905 ALA A1906 GLY A1907 VAL A1908 SITE 3 AC1 11 GLY A1909 ARG A1910 GLN A1948 SITE 1 AC2 10 HOH B 98 ASP B1870 CYS B1904 SER B1905 SITE 2 AC2 10 ALA B1906 GLY B1907 VAL B1908 GLY B1909 SITE 3 AC2 10 ARG B1910 GLN B1948 CRYST1 62.058 71.721 69.859 90.00 93.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016114 0.000000 0.000932 0.00000 SCALE2 0.000000 0.013943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014338 0.00000