data_2I4R # _entry.id 2I4R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2I4R RCSB RCSB039135 WWPDB D_1000039135 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id GR52A _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2I4R _pdbx_database_status.recvd_initial_deposition_date 2006-08-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.M.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Zhao, L.' 4 'Fang, Y.' 5 'Cunningham, K.' 6 'Ma, L.-C.' 7 'Xiao, R.' 8 'Acton, T.B.' 9 'Montelione, G.T.' 10 'Hunt, J.F.' 11 'Tong, L.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title 'Crystal structure of the V-type ATP synthase subunit F from Archaeoglobus fulgidus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vorobiev, S.M.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Zhao, L.' 4 primary 'Fang, Y.' 5 primary 'Cunningham, K.' 6 primary 'Ma, L.-C.' 7 primary 'Acton, T.B.' 8 primary 'Montelione, G.T.' 9 primary 'Hunt, J.F.' 10 primary 'Tong, L.' 11 # _cell.entry_id 2I4R _cell.length_a 47.398 _cell.length_b 77.827 _cell.length_c 117.786 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I4R _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'V-type ATP synthase subunit F' 11664.771 2 3.6.3.14 I51M ? ? 2 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'V-type ATPase subunit F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSH(MSE)LAVVGDPDFTIGF(MSE)LAGISDIYEVTSDEEIVKAVEDVLKRDDVGVVI(MSE)KQEYL KKLPPVLRREIDEKVEPTFVSVGGTGGVEEIREKIRKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVE PTFVSVGGTGGVEEIREKIRKA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier GR52A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MSE n 1 12 LEU n 1 13 ALA n 1 14 VAL n 1 15 VAL n 1 16 GLY n 1 17 ASP n 1 18 PRO n 1 19 ASP n 1 20 PHE n 1 21 THR n 1 22 ILE n 1 23 GLY n 1 24 PHE n 1 25 MSE n 1 26 LEU n 1 27 ALA n 1 28 GLY n 1 29 ILE n 1 30 SER n 1 31 ASP n 1 32 ILE n 1 33 TYR n 1 34 GLU n 1 35 VAL n 1 36 THR n 1 37 SER n 1 38 ASP n 1 39 GLU n 1 40 GLU n 1 41 ILE n 1 42 VAL n 1 43 LYS n 1 44 ALA n 1 45 VAL n 1 46 GLU n 1 47 ASP n 1 48 VAL n 1 49 LEU n 1 50 LYS n 1 51 ARG n 1 52 ASP n 1 53 ASP n 1 54 VAL n 1 55 GLY n 1 56 VAL n 1 57 VAL n 1 58 ILE n 1 59 MSE n 1 60 LYS n 1 61 GLN n 1 62 GLU n 1 63 TYR n 1 64 LEU n 1 65 LYS n 1 66 LYS n 1 67 LEU n 1 68 PRO n 1 69 PRO n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 ARG n 1 74 GLU n 1 75 ILE n 1 76 ASP n 1 77 GLU n 1 78 LYS n 1 79 VAL n 1 80 GLU n 1 81 PRO n 1 82 THR n 1 83 PHE n 1 84 VAL n 1 85 SER n 1 86 VAL n 1 87 GLY n 1 88 GLY n 1 89 THR n 1 90 GLY n 1 91 GLY n 1 92 VAL n 1 93 GLU n 1 94 GLU n 1 95 ILE n 1 96 ARG n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 ARG n 1 101 LYS n 1 102 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene atpF _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2234 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 49558 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) + Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VATF_ARCFU _struct_ref.pdbx_db_accession O29102 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2I4R A 12 ? 102 ? O29102 4 ? 94 ? 4 94 2 1 2I4R B 12 ? 102 ? O29102 4 ? 94 ? 4 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I4R MSE A 1 ? UNP O29102 ? ? 'CLONING ARTIFACT' -10 1 1 2I4R GLY A 2 ? UNP O29102 ? ? 'CLONING ARTIFACT' -9 2 1 2I4R HIS A 3 ? UNP O29102 ? ? 'EXPRESSION TAG' -8 3 1 2I4R HIS A 4 ? UNP O29102 ? ? 'EXPRESSION TAG' -7 4 1 2I4R HIS A 5 ? UNP O29102 ? ? 'EXPRESSION TAG' -6 5 1 2I4R HIS A 6 ? UNP O29102 ? ? 'EXPRESSION TAG' -5 6 1 2I4R HIS A 7 ? UNP O29102 ? ? 'EXPRESSION TAG' -4 7 1 2I4R HIS A 8 ? UNP O29102 ? ? 'EXPRESSION TAG' -3 8 1 2I4R SER A 9 ? UNP O29102 ? ? 'CLONING ARTIFACT' -2 9 1 2I4R HIS A 10 ? UNP O29102 ? ? 'CLONING ARTIFACT' -1 10 1 2I4R MSE A 11 ? UNP O29102 ? ? 'CLONING ARTIFACT' 0 11 1 2I4R MSE A 25 ? UNP O29102 MET 17 'MODIFIED RESIDUE' 17 12 1 2I4R MSE A 59 ? UNP O29102 ILE 51 'MODIFIED RESIDUE' 51 13 2 2I4R MSE B 1 ? UNP O29102 ? ? 'CLONING ARTIFACT' -10 14 2 2I4R GLY B 2 ? UNP O29102 ? ? 'CLONING ARTIFACT' -9 15 2 2I4R HIS B 3 ? UNP O29102 ? ? 'EXPRESSION TAG' -8 16 2 2I4R HIS B 4 ? UNP O29102 ? ? 'EXPRESSION TAG' -7 17 2 2I4R HIS B 5 ? UNP O29102 ? ? 'EXPRESSION TAG' -6 18 2 2I4R HIS B 6 ? UNP O29102 ? ? 'EXPRESSION TAG' -5 19 2 2I4R HIS B 7 ? UNP O29102 ? ? 'EXPRESSION TAG' -4 20 2 2I4R HIS B 8 ? UNP O29102 ? ? 'EXPRESSION TAG' -3 21 2 2I4R SER B 9 ? UNP O29102 ? ? 'CLONING ARTIFACT' -2 22 2 2I4R HIS B 10 ? UNP O29102 ? ? 'CLONING ARTIFACT' -1 23 2 2I4R MSE B 11 ? UNP O29102 ? ? 'CLONING ARTIFACT' 0 24 2 2I4R MSE B 25 ? UNP O29102 MET 17 'MODIFIED RESIDUE' 17 25 2 2I4R MSE B 59 ? UNP O29102 ILE 51 'MODIFIED RESIDUE' 51 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2I4R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '15-20% PEG 1000, 150 mM KH(2)PO(4), 0.1 M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-07-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97900 1.0 2 0.97918 1.0 3 0.96774 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97900, 0.97918, 0.96774' # _reflns.entry_id 2I4R _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 10674 _reflns.number_all 10771 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 10.2 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.688 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.06 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1068 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I4R _refine.ls_number_reflns_obs 8474 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 205705.82 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.14 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 81.7 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.255 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 380 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 71.8 _refine.aniso_B[1][1] 32.15 _refine.aniso_B[2][2] 3.86 _refine.aniso_B[3][3] -36.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.257732 _refine.solvent_model_param_bsol 23.8787 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2I4R _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.50 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.75 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1197 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1206 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 29.14 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.99 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 932 _refine_ls_shell.R_factor_R_work 0.315 _refine_ls_shell.percent_reflns_obs 55.2 _refine_ls_shell.R_factor_R_free 0.354 _refine_ls_shell.R_factor_R_free_error 0.071 _refine_ls_shell.percent_reflns_R_free 2.6 _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2I4R _struct.title 'Crystal structure of the V-type ATP synthase subunit F from Archaeoglobus fulgidus. NESG target GR52A.' _struct.pdbx_descriptor 'V-type ATP synthase subunit F (E.C.3.6.3.14)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I4R _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;NESG, GR52A, ATP synthesis, Hydrolase, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? ALA A 27 ? ASP A 9 ALA A 19 1 ? 11 HELX_P HELX_P2 2 SER A 37 ? ARG A 51 ? SER A 29 ARG A 43 1 ? 15 HELX_P HELX_P3 3 GLU A 62 ? LEU A 64 ? GLU A 54 LEU A 56 5 ? 3 HELX_P HELX_P4 4 PRO A 68 ? ARG A 73 ? PRO A 60 ARG A 65 1 ? 6 HELX_P HELX_P5 5 ASP B 17 ? ALA B 27 ? ASP B 9 ALA B 19 1 ? 11 HELX_P HELX_P6 6 SER B 37 ? ARG B 51 ? SER B 29 ARG B 43 1 ? 15 HELX_P HELX_P7 7 TYR B 63 ? LEU B 67 ? TYR B 55 LEU B 59 5 ? 5 HELX_P HELX_P8 8 PRO B 68 ? LYS B 78 ? PRO B 60 LYS B 70 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 10 C ? ? ? 1_555 A MSE 11 N ? ? A HIS -1 A MSE 0 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A LEU 12 N ? ? A MSE 0 A LEU 4 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A PHE 24 C ? ? ? 1_555 A MSE 25 N ? ? A PHE 16 A MSE 17 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 25 C ? ? ? 1_555 A LEU 26 N ? ? A MSE 17 A LEU 18 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A ILE 58 C ? ? ? 1_555 A MSE 59 N ? ? A ILE 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? A MSE 59 C ? ? ? 1_555 A LYS 60 N ? ? A MSE 51 A LYS 52 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? B HIS 10 C ? ? ? 1_555 B MSE 11 N ? ? B HIS -1 B MSE 0 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? B MSE 11 C ? ? ? 1_555 B LEU 12 N ? ? B MSE 0 B LEU 4 1_555 ? ? ? ? ? ? ? 1.323 ? covale9 covale ? ? B PHE 24 C ? ? ? 1_555 B MSE 25 N ? ? B PHE 16 B MSE 17 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? B MSE 25 C ? ? ? 1_555 B LEU 26 N ? ? B MSE 17 B LEU 18 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale ? ? B ILE 58 C ? ? ? 1_555 B MSE 59 N ? ? B ILE 50 B MSE 51 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? B MSE 59 C ? ? ? 1_555 B LYS 60 N ? ? B MSE 51 B LYS 52 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 80 A . ? GLU 72 A PRO 81 A ? PRO 73 A 1 2.72 2 GLU 80 B . ? GLU 72 B PRO 81 B ? PRO 73 B 1 0.02 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 32 ? GLU A 34 ? ILE A 24 GLU A 26 A 2 MSE A 11 ? GLY A 16 ? MSE A 0 GLY A 8 A 3 VAL A 54 ? LYS A 60 ? VAL A 46 LYS A 52 A 4 THR A 82 ? VAL A 86 ? THR A 74 VAL A 78 A 5 THR B 82 ? VAL B 86 ? THR B 74 VAL B 78 A 6 VAL B 54 ? LYS B 60 ? VAL B 46 LYS B 52 A 7 MSE B 11 ? GLY B 16 ? MSE B 0 GLY B 8 A 8 ILE B 32 ? GLU B 34 ? ILE B 24 GLU B 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 33 ? O TYR A 25 N VAL A 14 ? N VAL A 6 A 2 3 N ALA A 13 ? N ALA A 5 O ILE A 58 ? O ILE A 50 A 3 4 N VAL A 57 ? N VAL A 49 O VAL A 84 ? O VAL A 76 A 4 5 N SER A 85 ? N SER A 77 O SER B 85 ? O SER B 77 A 5 6 O VAL B 86 ? O VAL B 78 N MSE B 59 ? N MSE B 51 A 6 7 O GLY B 55 ? O GLY B 47 N MSE B 11 ? N MSE B 0 A 7 8 N VAL B 14 ? N VAL B 6 O TYR B 33 ? O TYR B 25 # _database_PDB_matrix.entry_id 2I4R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2I4R _atom_sites.fract_transf_matrix[1][1] 0.021098 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012849 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008490 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -10 ? ? ? A . n A 1 2 GLY 2 -9 ? ? ? A . n A 1 3 HIS 3 -8 ? ? ? A . n A 1 4 HIS 4 -7 ? ? ? A . n A 1 5 HIS 5 -6 ? ? ? A . n A 1 6 HIS 6 -5 ? ? ? A . n A 1 7 HIS 7 -4 ? ? ? A . n A 1 8 HIS 8 -3 ? ? ? A . n A 1 9 SER 9 -2 -2 SER SER A . n A 1 10 HIS 10 -1 -1 HIS HIS A . n A 1 11 MSE 11 0 0 MSE MSE A . n A 1 12 LEU 12 4 4 LEU LEU A . n A 1 13 ALA 13 5 5 ALA ALA A . n A 1 14 VAL 14 6 6 VAL VAL A . n A 1 15 VAL 15 7 7 VAL VAL A . n A 1 16 GLY 16 8 8 GLY GLY A . n A 1 17 ASP 17 9 9 ASP ASP A . n A 1 18 PRO 18 10 10 PRO PRO A . n A 1 19 ASP 19 11 11 ASP ASP A . n A 1 20 PHE 20 12 12 PHE PHE A . n A 1 21 THR 21 13 13 THR THR A . n A 1 22 ILE 22 14 14 ILE ILE A . n A 1 23 GLY 23 15 15 GLY GLY A . n A 1 24 PHE 24 16 16 PHE PHE A . n A 1 25 MSE 25 17 17 MSE MSE A . n A 1 26 LEU 26 18 18 LEU LEU A . n A 1 27 ALA 27 19 19 ALA ALA A . n A 1 28 GLY 28 20 20 GLY GLY A . n A 1 29 ILE 29 21 21 ILE ILE A . n A 1 30 SER 30 22 22 SER SER A . n A 1 31 ASP 31 23 23 ASP ASP A . n A 1 32 ILE 32 24 24 ILE ILE A . n A 1 33 TYR 33 25 25 TYR TYR A . n A 1 34 GLU 34 26 26 GLU GLU A . n A 1 35 VAL 35 27 27 VAL VAL A . n A 1 36 THR 36 28 28 THR THR A . n A 1 37 SER 37 29 29 SER SER A . n A 1 38 ASP 38 30 30 ASP ASP A . n A 1 39 GLU 39 31 31 GLU GLU A . n A 1 40 GLU 40 32 32 GLU GLU A . n A 1 41 ILE 41 33 33 ILE ILE A . n A 1 42 VAL 42 34 34 VAL VAL A . n A 1 43 LYS 43 35 35 LYS LYS A . n A 1 44 ALA 44 36 36 ALA ALA A . n A 1 45 VAL 45 37 37 VAL VAL A . n A 1 46 GLU 46 38 38 GLU GLU A . n A 1 47 ASP 47 39 39 ASP ASP A . n A 1 48 VAL 48 40 40 VAL VAL A . n A 1 49 LEU 49 41 41 LEU LEU A . n A 1 50 LYS 50 42 42 LYS LYS A . n A 1 51 ARG 51 43 43 ARG ARG A . n A 1 52 ASP 52 44 44 ASP ASP A . n A 1 53 ASP 53 45 45 ASP ASP A . n A 1 54 VAL 54 46 46 VAL VAL A . n A 1 55 GLY 55 47 47 GLY GLY A . n A 1 56 VAL 56 48 48 VAL VAL A . n A 1 57 VAL 57 49 49 VAL VAL A . n A 1 58 ILE 58 50 50 ILE ILE A . n A 1 59 MSE 59 51 51 MSE MSE A . n A 1 60 LYS 60 52 52 LYS LYS A . n A 1 61 GLN 61 53 53 GLN GLN A . n A 1 62 GLU 62 54 54 GLU GLU A . n A 1 63 TYR 63 55 55 TYR TYR A . n A 1 64 LEU 64 56 56 LEU ALA A . n A 1 65 LYS 65 57 57 LYS LYS A . n A 1 66 LYS 66 58 58 LYS LYS A . n A 1 67 LEU 67 59 59 LEU LEU A . n A 1 68 PRO 68 60 60 PRO PRO A . n A 1 69 PRO 69 61 61 PRO PRO A . n A 1 70 VAL 70 62 62 VAL VAL A . n A 1 71 LEU 71 63 63 LEU LEU A . n A 1 72 ARG 72 64 64 ARG ARG A . n A 1 73 ARG 73 65 65 ARG ALA A . n A 1 74 GLU 74 66 66 GLU ALA A . n A 1 75 ILE 75 67 67 ILE ILE A . n A 1 76 ASP 76 68 68 ASP ASP A . n A 1 77 GLU 77 69 69 GLU ALA A . n A 1 78 LYS 78 70 70 LYS LYS A . n A 1 79 VAL 79 71 71 VAL ALA A . n A 1 80 GLU 80 72 72 GLU ALA A . n A 1 81 PRO 81 73 73 PRO PRO A . n A 1 82 THR 82 74 74 THR THR A . n A 1 83 PHE 83 75 75 PHE PHE A . n A 1 84 VAL 84 76 76 VAL VAL A . n A 1 85 SER 85 77 77 SER SER A . n A 1 86 VAL 86 78 78 VAL VAL A . n A 1 87 GLY 87 79 79 GLY GLY A . n A 1 88 GLY 88 80 ? ? ? A . n A 1 89 THR 89 81 ? ? ? A . n A 1 90 GLY 90 82 ? ? ? A . n A 1 91 GLY 91 83 ? ? ? A . n A 1 92 VAL 92 84 ? ? ? A . n A 1 93 GLU 93 85 ? ? ? A . n A 1 94 GLU 94 86 ? ? ? A . n A 1 95 ILE 95 87 ? ? ? A . n A 1 96 ARG 96 88 ? ? ? A . n A 1 97 GLU 97 89 ? ? ? A . n A 1 98 LYS 98 90 ? ? ? A . n A 1 99 ILE 99 91 ? ? ? A . n A 1 100 ARG 100 92 ? ? ? A . n A 1 101 LYS 101 93 ? ? ? A . n A 1 102 ALA 102 94 ? ? ? A . n B 1 1 MSE 1 -10 ? ? ? B . n B 1 2 GLY 2 -9 ? ? ? B . n B 1 3 HIS 3 -8 ? ? ? B . n B 1 4 HIS 4 -7 ? ? ? B . n B 1 5 HIS 5 -6 ? ? ? B . n B 1 6 HIS 6 -5 ? ? ? B . n B 1 7 HIS 7 -4 ? ? ? B . n B 1 8 HIS 8 -3 -3 HIS HIS B . n B 1 9 SER 9 -2 -2 SER SER B . n B 1 10 HIS 10 -1 -1 HIS HIS B . n B 1 11 MSE 11 0 0 MSE MSE B . n B 1 12 LEU 12 4 4 LEU LEU B . n B 1 13 ALA 13 5 5 ALA ALA B . n B 1 14 VAL 14 6 6 VAL VAL B . n B 1 15 VAL 15 7 7 VAL VAL B . n B 1 16 GLY 16 8 8 GLY GLY B . n B 1 17 ASP 17 9 9 ASP ASP B . n B 1 18 PRO 18 10 10 PRO PRO B . n B 1 19 ASP 19 11 11 ASP ASP B . n B 1 20 PHE 20 12 12 PHE PHE B . n B 1 21 THR 21 13 13 THR ALA B . n B 1 22 ILE 22 14 14 ILE ILE B . n B 1 23 GLY 23 15 15 GLY GLY B . n B 1 24 PHE 24 16 16 PHE PHE B . n B 1 25 MSE 25 17 17 MSE MSE B . n B 1 26 LEU 26 18 18 LEU LEU B . n B 1 27 ALA 27 19 19 ALA ALA B . n B 1 28 GLY 28 20 20 GLY GLY B . n B 1 29 ILE 29 21 21 ILE ILE B . n B 1 30 SER 30 22 22 SER SER B . n B 1 31 ASP 31 23 23 ASP ASP B . n B 1 32 ILE 32 24 24 ILE ILE B . n B 1 33 TYR 33 25 25 TYR TYR B . n B 1 34 GLU 34 26 26 GLU GLU B . n B 1 35 VAL 35 27 27 VAL VAL B . n B 1 36 THR 36 28 28 THR THR B . n B 1 37 SER 37 29 29 SER SER B . n B 1 38 ASP 38 30 30 ASP ASP B . n B 1 39 GLU 39 31 31 GLU GLU B . n B 1 40 GLU 40 32 32 GLU GLU B . n B 1 41 ILE 41 33 33 ILE ILE B . n B 1 42 VAL 42 34 34 VAL VAL B . n B 1 43 LYS 43 35 35 LYS LYS B . n B 1 44 ALA 44 36 36 ALA ALA B . n B 1 45 VAL 45 37 37 VAL VAL B . n B 1 46 GLU 46 38 38 GLU GLU B . n B 1 47 ASP 47 39 39 ASP ASP B . n B 1 48 VAL 48 40 40 VAL VAL B . n B 1 49 LEU 49 41 41 LEU LEU B . n B 1 50 LYS 50 42 42 LYS LYS B . n B 1 51 ARG 51 43 43 ARG ARG B . n B 1 52 ASP 52 44 44 ASP ASP B . n B 1 53 ASP 53 45 45 ASP ASP B . n B 1 54 VAL 54 46 46 VAL VAL B . n B 1 55 GLY 55 47 47 GLY GLY B . n B 1 56 VAL 56 48 48 VAL VAL B . n B 1 57 VAL 57 49 49 VAL VAL B . n B 1 58 ILE 58 50 50 ILE ILE B . n B 1 59 MSE 59 51 51 MSE MSE B . n B 1 60 LYS 60 52 52 LYS LYS B . n B 1 61 GLN 61 53 53 GLN GLN B . n B 1 62 GLU 62 54 54 GLU GLU B . n B 1 63 TYR 63 55 55 TYR TYR B . n B 1 64 LEU 64 56 56 LEU LEU B . n B 1 65 LYS 65 57 57 LYS ALA B . n B 1 66 LYS 66 58 58 LYS LYS B . n B 1 67 LEU 67 59 59 LEU LEU B . n B 1 68 PRO 68 60 60 PRO PRO B . n B 1 69 PRO 69 61 61 PRO PRO B . n B 1 70 VAL 70 62 62 VAL VAL B . n B 1 71 LEU 71 63 63 LEU LEU B . n B 1 72 ARG 72 64 64 ARG ALA B . n B 1 73 ARG 73 65 65 ARG ARG B . n B 1 74 GLU 74 66 66 GLU ALA B . n B 1 75 ILE 75 67 67 ILE ILE B . n B 1 76 ASP 76 68 68 ASP ASP B . n B 1 77 GLU 77 69 69 GLU ALA B . n B 1 78 LYS 78 70 70 LYS LYS B . n B 1 79 VAL 79 71 71 VAL ALA B . n B 1 80 GLU 80 72 72 GLU ALA B . n B 1 81 PRO 81 73 73 PRO PRO B . n B 1 82 THR 82 74 74 THR THR B . n B 1 83 PHE 83 75 75 PHE PHE B . n B 1 84 VAL 84 76 76 VAL VAL B . n B 1 85 SER 85 77 77 SER SER B . n B 1 86 VAL 86 78 78 VAL VAL B . n B 1 87 GLY 87 79 79 GLY GLY B . n B 1 88 GLY 88 80 ? ? ? B . n B 1 89 THR 89 81 ? ? ? B . n B 1 90 GLY 90 82 ? ? ? B . n B 1 91 GLY 91 83 ? ? ? B . n B 1 92 VAL 92 84 ? ? ? B . n B 1 93 GLU 93 85 ? ? ? B . n B 1 94 GLU 94 86 ? ? ? B . n B 1 95 ILE 95 87 ? ? ? B . n B 1 96 ARG 96 88 ? ? ? B . n B 1 97 GLU 97 89 ? ? ? B . n B 1 98 LYS 98 90 ? ? ? B . n B 1 99 ILE 99 91 ? ? ? B . n B 1 100 ARG 100 92 ? ? ? B . n B 1 101 LYS 101 93 ? ? ? B . n B 1 102 ALA 102 94 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 0 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 17 ? MET SELENOMETHIONINE 3 A MSE 59 A MSE 51 ? MET SELENOMETHIONINE 4 B MSE 11 B MSE 0 ? MET SELENOMETHIONINE 5 B MSE 25 B MSE 17 ? MET SELENOMETHIONINE 6 B MSE 59 B MSE 51 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA,PQS octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 10650 ? 2 MORE -94 ? 2 'SSA (A^2)' 26950 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 155.6540000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 117.7860000000 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 155.6540000000 0.0000000000 0.0000000000 -1.0000000000 117.7860000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SHELXD phasing . ? 5 SHELXE 'model building' . ? 6 SOLVE phasing . ? 7 RESOLVE phasing . ? 8 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 23 ? ? -112.09 63.36 2 1 THR A 28 ? ? -135.88 -66.04 3 1 ASP A 30 ? ? -32.49 -37.16 4 1 GLU A 54 ? ? -64.62 8.90 5 1 ASP B 23 ? ? -98.23 51.72 6 1 THR B 28 ? ? -145.21 -67.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 56 ? CG ? A LEU 64 CG 2 1 Y 1 A LEU 56 ? CD1 ? A LEU 64 CD1 3 1 Y 1 A LEU 56 ? CD2 ? A LEU 64 CD2 4 1 Y 1 A ARG 65 ? CG ? A ARG 73 CG 5 1 Y 1 A ARG 65 ? CD ? A ARG 73 CD 6 1 Y 1 A ARG 65 ? NE ? A ARG 73 NE 7 1 Y 1 A ARG 65 ? CZ ? A ARG 73 CZ 8 1 Y 1 A ARG 65 ? NH1 ? A ARG 73 NH1 9 1 Y 1 A ARG 65 ? NH2 ? A ARG 73 NH2 10 1 Y 1 A GLU 66 ? CG ? A GLU 74 CG 11 1 Y 1 A GLU 66 ? CD ? A GLU 74 CD 12 1 Y 1 A GLU 66 ? OE1 ? A GLU 74 OE1 13 1 Y 1 A GLU 66 ? OE2 ? A GLU 74 OE2 14 1 Y 1 A GLU 69 ? CG ? A GLU 77 CG 15 1 Y 1 A GLU 69 ? CD ? A GLU 77 CD 16 1 Y 1 A GLU 69 ? OE1 ? A GLU 77 OE1 17 1 Y 1 A GLU 69 ? OE2 ? A GLU 77 OE2 18 1 Y 1 A VAL 71 ? CG1 ? A VAL 79 CG1 19 1 Y 1 A VAL 71 ? CG2 ? A VAL 79 CG2 20 1 Y 1 A GLU 72 ? CG ? A GLU 80 CG 21 1 Y 1 A GLU 72 ? CD ? A GLU 80 CD 22 1 Y 1 A GLU 72 ? OE1 ? A GLU 80 OE1 23 1 Y 1 A GLU 72 ? OE2 ? A GLU 80 OE2 24 1 Y 1 B THR 13 ? OG1 ? B THR 21 OG1 25 1 Y 1 B THR 13 ? CG2 ? B THR 21 CG2 26 1 Y 1 B LYS 57 ? CG ? B LYS 65 CG 27 1 Y 1 B LYS 57 ? CD ? B LYS 65 CD 28 1 Y 1 B LYS 57 ? CE ? B LYS 65 CE 29 1 Y 1 B LYS 57 ? NZ ? B LYS 65 NZ 30 1 Y 1 B ARG 64 ? CG ? B ARG 72 CG 31 1 Y 1 B ARG 64 ? CD ? B ARG 72 CD 32 1 Y 1 B ARG 64 ? NE ? B ARG 72 NE 33 1 Y 1 B ARG 64 ? CZ ? B ARG 72 CZ 34 1 Y 1 B ARG 64 ? NH1 ? B ARG 72 NH1 35 1 Y 1 B ARG 64 ? NH2 ? B ARG 72 NH2 36 1 Y 1 B GLU 66 ? CG ? B GLU 74 CG 37 1 Y 1 B GLU 66 ? CD ? B GLU 74 CD 38 1 Y 1 B GLU 66 ? OE1 ? B GLU 74 OE1 39 1 Y 1 B GLU 66 ? OE2 ? B GLU 74 OE2 40 1 Y 1 B GLU 69 ? CG ? B GLU 77 CG 41 1 Y 1 B GLU 69 ? CD ? B GLU 77 CD 42 1 Y 1 B GLU 69 ? OE1 ? B GLU 77 OE1 43 1 Y 1 B GLU 69 ? OE2 ? B GLU 77 OE2 44 1 Y 1 B VAL 71 ? CG1 ? B VAL 79 CG1 45 1 Y 1 B VAL 71 ? CG2 ? B VAL 79 CG2 46 1 Y 1 B GLU 72 ? CG ? B GLU 80 CG 47 1 Y 1 B GLU 72 ? CD ? B GLU 80 CD 48 1 Y 1 B GLU 72 ? OE1 ? B GLU 80 OE1 49 1 Y 1 B GLU 72 ? OE2 ? B GLU 80 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -10 ? A MSE 1 2 1 Y 1 A GLY -9 ? A GLY 2 3 1 Y 1 A HIS -8 ? A HIS 3 4 1 Y 1 A HIS -7 ? A HIS 4 5 1 Y 1 A HIS -6 ? A HIS 5 6 1 Y 1 A HIS -5 ? A HIS 6 7 1 Y 1 A HIS -4 ? A HIS 7 8 1 Y 1 A HIS -3 ? A HIS 8 9 1 Y 1 A GLY 80 ? A GLY 88 10 1 Y 1 A THR 81 ? A THR 89 11 1 Y 1 A GLY 82 ? A GLY 90 12 1 Y 1 A GLY 83 ? A GLY 91 13 1 Y 1 A VAL 84 ? A VAL 92 14 1 Y 1 A GLU 85 ? A GLU 93 15 1 Y 1 A GLU 86 ? A GLU 94 16 1 Y 1 A ILE 87 ? A ILE 95 17 1 Y 1 A ARG 88 ? A ARG 96 18 1 Y 1 A GLU 89 ? A GLU 97 19 1 Y 1 A LYS 90 ? A LYS 98 20 1 Y 1 A ILE 91 ? A ILE 99 21 1 Y 1 A ARG 92 ? A ARG 100 22 1 Y 1 A LYS 93 ? A LYS 101 23 1 Y 1 A ALA 94 ? A ALA 102 24 1 Y 1 B MSE -10 ? B MSE 1 25 1 Y 1 B GLY -9 ? B GLY 2 26 1 Y 1 B HIS -8 ? B HIS 3 27 1 Y 1 B HIS -7 ? B HIS 4 28 1 Y 1 B HIS -6 ? B HIS 5 29 1 Y 1 B HIS -5 ? B HIS 6 30 1 Y 1 B HIS -4 ? B HIS 7 31 1 Y 1 B GLY 80 ? B GLY 88 32 1 Y 1 B THR 81 ? B THR 89 33 1 Y 1 B GLY 82 ? B GLY 90 34 1 Y 1 B GLY 83 ? B GLY 91 35 1 Y 1 B VAL 84 ? B VAL 92 36 1 Y 1 B GLU 85 ? B GLU 93 37 1 Y 1 B GLU 86 ? B GLU 94 38 1 Y 1 B ILE 87 ? B ILE 95 39 1 Y 1 B ARG 88 ? B ARG 96 40 1 Y 1 B GLU 89 ? B GLU 97 41 1 Y 1 B LYS 90 ? B LYS 98 42 1 Y 1 B ILE 91 ? B ILE 99 43 1 Y 1 B ARG 92 ? B ARG 100 44 1 Y 1 B LYS 93 ? B LYS 101 45 1 Y 1 B ALA 94 ? B ALA 102 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 101 HOH WAT A . C 2 HOH 2 102 102 HOH WAT A . D 2 HOH 1 104 104 HOH WAT B . D 2 HOH 2 105 105 HOH WAT B . D 2 HOH 3 106 106 HOH WAT B . D 2 HOH 4 107 107 HOH WAT B . D 2 HOH 5 108 108 HOH WAT B . D 2 HOH 6 109 109 HOH WAT B . D 2 HOH 7 110 110 HOH WAT B . #