HEADER LYASE 25-AUG-06 2I5Q TITLE CRYSTAL STRUCTURE OF APO L-RHAMNONATE DEHYDRATASE FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RHAMNONATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE SUPERFAMILY, CLONE NAME 9265B1BCT1P1_10997_1, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.M.SAUDER,S.K.BURLEY,J.A.GERLT,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 20-SEP-23 2I5Q 1 REMARK REVDAT 8 21-DEC-22 2I5Q 1 SEQADV REVDAT 7 03-FEB-21 2I5Q 1 AUTHOR SEQADV REVDAT 6 14-NOV-18 2I5Q 1 AUTHOR REVDAT 5 24-FEB-09 2I5Q 1 VERSN REVDAT 4 14-OCT-08 2I5Q 1 JRNL REVDAT 3 23-SEP-08 2I5Q 1 JRNL REVDAT 2 26-SEP-06 2I5Q 1 AUTHOR JRNL REVDAT 1 05-SEP-06 2I5Q 0 JRNL AUTH J.F.RAKUS,A.A.FEDOROV,E.V.FEDOROV,M.E.GLASNER,B.K.HUBBARD, JRNL AUTH 2 J.D.DELLI,P.C.BABBITT,S.C.ALMO,J.A.GERLT JRNL TITL EVOLUTION OF ENZYMATIC ACTIVITIES IN THE ENOLASE JRNL TITL 2 SUPERFAMILY: L-RHAMNONATE DEHYDRATASE. JRNL REF BIOCHEMISTRY V. 47 9944 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18754693 JRNL DOI 10.1021/BI800914R REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 132130.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 44477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3856 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 219 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.22000 REMARK 3 B22 (A**2) : 4.22000 REMARK 3 B33 (A**2) : -8.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.860 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 46.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2I5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1RVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULFATE, 0.1M TRIS-HCL, REMARK 280 0.2 M LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.41250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.41250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.88150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.41250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.41250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.88150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 62.41250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.41250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.88150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 62.41250 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 62.41250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.88150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE DIMER AB REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 GLU A 24 REMARK 465 LYS A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 TYR A 32 REMARK 465 HIS A 33 REMARK 465 ASP A 34 REMARK 465 GLN A 35 REMARK 465 GLY A 36 REMARK 465 ALA A 37 REMARK 465 ASN A 38 REMARK 465 HIS A 39 REMARK 465 TRP A 40 REMARK 465 ILE A 41 REMARK 465 ASP A 42 REMARK 465 ASP A 43 REMARK 465 GLN A 57 REMARK 465 LEU A 58 REMARK 465 ARG A 59 REMARK 465 GLN A 60 REMARK 465 GLU A 406 REMARK 465 GLY A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 24 REMARK 465 LYS B 25 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 30 REMARK 465 ASP B 31 REMARK 465 TYR B 32 REMARK 465 HIS B 33 REMARK 465 ASP B 34 REMARK 465 GLN B 35 REMARK 465 GLY B 36 REMARK 465 ALA B 37 REMARK 465 ASN B 38 REMARK 465 GLN B 57 REMARK 465 LEU B 58 REMARK 465 ARG B 59 REMARK 465 GLN B 60 REMARK 465 GLU B 406 REMARK 465 GLY B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 53 -5.73 -53.25 REMARK 500 ALA A 88 -39.47 -166.64 REMARK 500 HIS A 99 -64.16 -139.84 REMARK 500 ASP A 111 39.01 -81.77 REMARK 500 ARG A 176 76.35 -119.18 REMARK 500 TRP A 228 61.88 33.48 REMARK 500 MET A 229 18.07 52.81 REMARK 500 GLU A 253 57.32 39.72 REMARK 500 THR A 284 145.20 76.20 REMARK 500 TRP A 305 -31.39 -132.03 REMARK 500 SER A 332 -143.17 59.65 REMARK 500 CYS A 357 77.29 65.79 REMARK 500 SER A 358 -21.79 -145.13 REMARK 500 HIS B 44 51.00 36.27 REMARK 500 ALA B 88 -39.58 -166.58 REMARK 500 HIS B 99 -64.61 -140.93 REMARK 500 ASP B 111 40.18 -81.99 REMARK 500 ARG B 176 75.65 -119.82 REMARK 500 TRP B 228 61.45 33.83 REMARK 500 MET B 229 18.73 53.35 REMARK 500 THR B 284 145.75 75.91 REMARK 500 TRP B 305 -30.57 -131.16 REMARK 500 SER B 332 -143.43 59.81 REMARK 500 CYS B 357 77.25 65.61 REMARK 500 SER B 358 -21.52 -145.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM SALMONELLA REMARK 900 TYPHIMURIUM REMARK 900 RELATED ID: NYSGXRC-9265B RELATED DB: TARGETDB DBREF 2I5Q A 2 405 UNP Q8XE07 Q8XE07_ECO57 2 405 DBREF 2I5Q B 2 405 UNP Q8XE07 Q8XE07_ECO57 2 405 SEQADV 2I5Q MET A -1 UNP Q8XE07 INITIATING METHIONINE SEQADV 2I5Q SER A 0 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q LEU A 1 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q GLU A 406 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q GLY A 407 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q HIS A 408 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS A 409 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS A 410 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS A 411 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS A 412 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS A 413 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q MET B -1 UNP Q8XE07 INITIATING METHIONINE SEQADV 2I5Q SER B 0 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q LEU B 1 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q GLU B 406 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q GLY B 407 UNP Q8XE07 CLONING ARTIFACT SEQADV 2I5Q HIS B 408 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS B 409 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS B 410 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS B 411 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS B 412 UNP Q8XE07 EXPRESSION TAG SEQADV 2I5Q HIS B 413 UNP Q8XE07 EXPRESSION TAG SEQRES 1 A 415 MET SER LEU GLU ASN ILE MET THR LEU PRO LYS ILE LYS SEQRES 2 A 415 GLN VAL ARG ALA TRP PHE THR GLY GLY ALA THR ALA GLU SEQRES 3 A 415 LYS GLY ALA GLY GLY GLY ASP TYR HIS ASP GLN GLY ALA SEQRES 4 A 415 ASN HIS TRP ILE ASP ASP HIS ILE ALA THR PRO MET SER SEQRES 5 A 415 LYS TYR ARG ASP TYR GLU GLN LEU ARG GLN SER PHE GLY SEQRES 6 A 415 ILE ASN VAL LEU GLY THR LEU VAL VAL GLU VAL GLU ALA SEQRES 7 A 415 GLU ASN GLY GLN THR GLY PHE ALA VAL SER THR ALA GLY SEQRES 8 A 415 GLU MET GLY CYS PHE ILE VAL GLU LYS HIS LEU ASN ARG SEQRES 9 A 415 PHE ILE GLU GLY LYS CYS VAL SER ASP ILE LYS LEU ILE SEQRES 10 A 415 HIS ASP GLN MET LEU ASN ALA THR LEU TYR TYR SER GLY SEQRES 11 A 415 SER GLY GLY LEU VAL MET ASN THR ILE SER CYS VAL ASP SEQRES 12 A 415 LEU ALA LEU TRP ASP LEU PHE GLY LYS VAL VAL GLY LEU SEQRES 13 A 415 PRO VAL TYR LYS LEU LEU GLY GLY ALA VAL ARG ASP GLU SEQRES 14 A 415 ILE GLN PHE TYR ALA THR GLY ALA ARG PRO ASP LEU ALA SEQRES 15 A 415 LYS GLU MET GLY PHE ILE GLY GLY LYS MET PRO THR HIS SEQRES 16 A 415 TRP GLY PRO HIS ASP GLY ASP ALA GLY ILE ARG LYS ASP SEQRES 17 A 415 ALA ALA MET VAL ALA ASP MET ARG GLU LYS CYS GLY GLU SEQRES 18 A 415 ASP PHE TRP LEU MET LEU ASP CYS TRP MET SER GLN ASP SEQRES 19 A 415 VAL ASN TYR ALA THR LYS LEU ALA HIS ALA CYS ALA PRO SEQRES 20 A 415 TYR ASN LEU LYS TRP ILE GLU GLU CYS LEU PRO PRO GLN SEQRES 21 A 415 GLN TYR GLU GLY TYR ARG GLU LEU LYS ARG ASN ALA PRO SEQRES 22 A 415 VAL GLY MET MET VAL THR SER GLY GLU HIS HIS GLY THR SEQRES 23 A 415 LEU GLN SER PHE ARG THR LEU SER GLU THR GLY ILE ASP SEQRES 24 A 415 ILE MET GLN PRO ASP VAL GLY TRP CYS GLY GLY LEU THR SEQRES 25 A 415 THR LEU VAL GLU ILE ALA ALA ILE ALA LYS SER ARG GLY SEQRES 26 A 415 GLN LEU VAL VAL PRO HIS GLY SER SER VAL TYR SER HIS SEQRES 27 A 415 HIS ALA VAL ILE THR PHE THR ASN THR PRO PHE SER GLU SEQRES 28 A 415 PHE LEU MET THR SER PRO ASP CYS SER THR MET ARG PRO SEQRES 29 A 415 GLN PHE ASP PRO ILE LEU LEU ASN GLU PRO VAL PRO VAL SEQRES 30 A 415 ASN GLY ARG ILE HIS LYS SER VAL LEU ASP LYS PRO GLY SEQRES 31 A 415 PHE GLY VAL GLU LEU ASN ARG ASP CYS ASN LEU LYS ARG SEQRES 32 A 415 PRO TYR SER HIS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 415 MET SER LEU GLU ASN ILE MET THR LEU PRO LYS ILE LYS SEQRES 2 B 415 GLN VAL ARG ALA TRP PHE THR GLY GLY ALA THR ALA GLU SEQRES 3 B 415 LYS GLY ALA GLY GLY GLY ASP TYR HIS ASP GLN GLY ALA SEQRES 4 B 415 ASN HIS TRP ILE ASP ASP HIS ILE ALA THR PRO MET SER SEQRES 5 B 415 LYS TYR ARG ASP TYR GLU GLN LEU ARG GLN SER PHE GLY SEQRES 6 B 415 ILE ASN VAL LEU GLY THR LEU VAL VAL GLU VAL GLU ALA SEQRES 7 B 415 GLU ASN GLY GLN THR GLY PHE ALA VAL SER THR ALA GLY SEQRES 8 B 415 GLU MET GLY CYS PHE ILE VAL GLU LYS HIS LEU ASN ARG SEQRES 9 B 415 PHE ILE GLU GLY LYS CYS VAL SER ASP ILE LYS LEU ILE SEQRES 10 B 415 HIS ASP GLN MET LEU ASN ALA THR LEU TYR TYR SER GLY SEQRES 11 B 415 SER GLY GLY LEU VAL MET ASN THR ILE SER CYS VAL ASP SEQRES 12 B 415 LEU ALA LEU TRP ASP LEU PHE GLY LYS VAL VAL GLY LEU SEQRES 13 B 415 PRO VAL TYR LYS LEU LEU GLY GLY ALA VAL ARG ASP GLU SEQRES 14 B 415 ILE GLN PHE TYR ALA THR GLY ALA ARG PRO ASP LEU ALA SEQRES 15 B 415 LYS GLU MET GLY PHE ILE GLY GLY LYS MET PRO THR HIS SEQRES 16 B 415 TRP GLY PRO HIS ASP GLY ASP ALA GLY ILE ARG LYS ASP SEQRES 17 B 415 ALA ALA MET VAL ALA ASP MET ARG GLU LYS CYS GLY GLU SEQRES 18 B 415 ASP PHE TRP LEU MET LEU ASP CYS TRP MET SER GLN ASP SEQRES 19 B 415 VAL ASN TYR ALA THR LYS LEU ALA HIS ALA CYS ALA PRO SEQRES 20 B 415 TYR ASN LEU LYS TRP ILE GLU GLU CYS LEU PRO PRO GLN SEQRES 21 B 415 GLN TYR GLU GLY TYR ARG GLU LEU LYS ARG ASN ALA PRO SEQRES 22 B 415 VAL GLY MET MET VAL THR SER GLY GLU HIS HIS GLY THR SEQRES 23 B 415 LEU GLN SER PHE ARG THR LEU SER GLU THR GLY ILE ASP SEQRES 24 B 415 ILE MET GLN PRO ASP VAL GLY TRP CYS GLY GLY LEU THR SEQRES 25 B 415 THR LEU VAL GLU ILE ALA ALA ILE ALA LYS SER ARG GLY SEQRES 26 B 415 GLN LEU VAL VAL PRO HIS GLY SER SER VAL TYR SER HIS SEQRES 27 B 415 HIS ALA VAL ILE THR PHE THR ASN THR PRO PHE SER GLU SEQRES 28 B 415 PHE LEU MET THR SER PRO ASP CYS SER THR MET ARG PRO SEQRES 29 B 415 GLN PHE ASP PRO ILE LEU LEU ASN GLU PRO VAL PRO VAL SEQRES 30 B 415 ASN GLY ARG ILE HIS LYS SER VAL LEU ASP LYS PRO GLY SEQRES 31 B 415 PHE GLY VAL GLU LEU ASN ARG ASP CYS ASN LEU LYS ARG SEQRES 32 B 415 PRO TYR SER HIS GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *110(H2 O) HELIX 1 1 ALA A 88 HIS A 99 1 12 HELIX 2 2 LEU A 100 GLU A 105 1 6 HELIX 3 3 ASP A 111 THR A 123 1 13 HELIX 4 4 THR A 123 GLY A 128 1 6 HELIX 5 5 GLY A 130 GLY A 153 1 24 HELIX 6 6 PRO A 155 LEU A 160 1 6 HELIX 7 7 ARG A 176 MET A 183 1 8 HELIX 8 8 GLY A 195 HIS A 197 5 3 HELIX 9 9 ASP A 198 GLY A 218 1 21 HELIX 10 10 ASP A 232 ALA A 244 1 13 HELIX 11 11 PRO A 245 ASN A 247 5 3 HELIX 12 12 GLN A 259 ALA A 270 1 12 HELIX 13 13 THR A 284 GLU A 293 1 10 HELIX 14 14 GLY A 308 ARG A 322 1 15 HELIX 15 15 SER A 332 ILE A 340 1 9 HELIX 16 16 SER A 382 ASP A 385 5 4 HELIX 17 17 TYR B 52 GLU B 56 5 5 HELIX 18 18 ALA B 88 HIS B 99 1 12 HELIX 19 19 LEU B 100 GLU B 105 1 6 HELIX 20 20 ASP B 111 THR B 123 1 13 HELIX 21 21 THR B 123 GLY B 128 1 6 HELIX 22 22 GLY B 130 GLY B 153 1 24 HELIX 23 23 PRO B 155 LEU B 160 1 6 HELIX 24 24 ARG B 176 MET B 183 1 8 HELIX 25 25 GLY B 195 HIS B 197 5 3 HELIX 26 26 ASP B 198 GLY B 218 1 21 HELIX 27 27 ASP B 232 ALA B 244 1 13 HELIX 28 28 PRO B 245 ASN B 247 5 3 HELIX 29 29 GLN B 259 ALA B 270 1 12 HELIX 30 30 THR B 284 THR B 294 1 11 HELIX 31 31 GLY B 308 ARG B 322 1 15 HELIX 32 32 SER B 332 ILE B 340 1 9 HELIX 33 33 SER B 382 ASP B 385 5 4 SHEET 1 A 3 ILE A 10 THR A 18 0 SHEET 2 A 3 THR A 69 ALA A 76 -1 O THR A 69 N THR A 18 SHEET 3 A 3 THR A 81 THR A 87 -1 O GLY A 82 N VAL A 74 SHEET 1 B 7 ILE A 298 MET A 299 0 SHEET 2 B 7 MET A 275 SER A 278 1 N SER A 278 O ILE A 298 SHEET 3 B 7 TRP A 250 GLU A 252 1 N ILE A 251 O MET A 275 SHEET 4 B 7 TRP A 222 ASP A 226 1 N LEU A 225 O GLU A 252 SHEET 5 B 7 GLY A 187 PRO A 191 1 N MET A 190 O MET A 224 SHEET 6 B 7 GLU A 167 THR A 173 1 N ALA A 172 O LYS A 189 SHEET 7 B 7 SER A 348 LEU A 351 1 O SER A 348 N GLN A 169 SHEET 1 C 7 ILE A 298 MET A 299 0 SHEET 2 C 7 MET A 275 SER A 278 1 N SER A 278 O ILE A 298 SHEET 3 C 7 TRP A 250 GLU A 252 1 N ILE A 251 O MET A 275 SHEET 4 C 7 TRP A 222 ASP A 226 1 N LEU A 225 O GLU A 252 SHEET 5 C 7 GLY A 187 PRO A 191 1 N MET A 190 O MET A 224 SHEET 6 C 7 GLU A 167 THR A 173 1 N ALA A 172 O LYS A 189 SHEET 7 C 7 ARG A 378 HIS A 380 -1 O ILE A 379 N ILE A 168 SHEET 1 D 2 LEU A 368 LEU A 369 0 SHEET 2 D 2 GLU A 392 LEU A 393 -1 O GLU A 392 N LEU A 369 SHEET 1 E 3 ILE B 10 THR B 18 0 SHEET 2 E 3 THR B 69 ALA B 76 -1 O GLU B 75 N GLN B 12 SHEET 3 E 3 THR B 81 THR B 87 -1 O GLY B 82 N VAL B 74 SHEET 1 F 7 ILE B 298 MET B 299 0 SHEET 2 F 7 MET B 275 SER B 278 1 N SER B 278 O ILE B 298 SHEET 3 F 7 TRP B 250 GLU B 252 1 N ILE B 251 O MET B 275 SHEET 4 F 7 TRP B 222 ASP B 226 1 N LEU B 225 O GLU B 252 SHEET 5 F 7 GLY B 187 PRO B 191 1 N MET B 190 O MET B 224 SHEET 6 F 7 GLU B 167 THR B 173 1 N ALA B 172 O LYS B 189 SHEET 7 F 7 SER B 348 LEU B 351 1 O SER B 348 N GLN B 169 SHEET 1 G 7 ILE B 298 MET B 299 0 SHEET 2 G 7 MET B 275 SER B 278 1 N SER B 278 O ILE B 298 SHEET 3 G 7 TRP B 250 GLU B 252 1 N ILE B 251 O MET B 275 SHEET 4 G 7 TRP B 222 ASP B 226 1 N LEU B 225 O GLU B 252 SHEET 5 G 7 GLY B 187 PRO B 191 1 N MET B 190 O MET B 224 SHEET 6 G 7 GLU B 167 THR B 173 1 N ALA B 172 O LYS B 189 SHEET 7 G 7 ARG B 378 HIS B 380 -1 O ILE B 379 N ILE B 168 SHEET 1 H 2 LEU B 368 LEU B 369 0 SHEET 2 H 2 GLU B 392 LEU B 393 -1 O GLU B 392 N LEU B 369 CISPEP 1 ASP A 365 PRO A 366 0 -0.03 CISPEP 2 ASP B 365 PRO B 366 0 0.03 CRYST1 124.825 124.825 103.763 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009637 0.00000