HEADER TRANSFERASE 28-AUG-06 2I6D TITLE THE STRUCTURE OF A PUTATIVE RNA METHYLTRANSFERASE OF THE TRMH FAMILY TITLE 2 FROM PORPHYROMONAS GINGIVALIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA METHYLTRANSFERASE, TRMH FAMILY; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 GENE: SPOU, PG_0744; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TIGR4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS RNA METHYLTRANSFERASE, TRMH FAMILY, STUCTURAL GENOMICS, PORPHYROMONAS KEYWDS 2 GINGIVALIS, KNOT, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,K.E.MUSSAR,H.LI,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2I6D 1 VERSN REVDAT 2 24-FEB-09 2I6D 1 VERSN REVDAT 1 17-OCT-06 2I6D 0 JRNL AUTH M.E.CUFF,K.E.MUSSAR,H.LI,S.MOY,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL THE STRUCTURE OF A PUTATIVE RNA METHYLTRANSFERASE OF THE JRNL TITL 2 TRMH FAMILY FROM PORPHYROMONAS GINGIVALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 22012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1386 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1933 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2069 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2829 ; 1.415 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 5.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;37.463 ;22.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;15.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.033 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1591 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 988 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1426 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 0.996 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2124 ; 1.366 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 812 ; 2.294 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 699 ; 3.317 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9235 22.9791 51.2669 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: -0.0600 REMARK 3 T33: -0.0380 T12: 0.0003 REMARK 3 T13: -0.0300 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.7396 L22: 9.0521 REMARK 3 L33: 1.8703 L12: -0.0142 REMARK 3 L13: -0.0302 L23: -0.5282 REMARK 3 S TENSOR REMARK 3 S11: 0.1795 S12: -0.0809 S13: 0.1157 REMARK 3 S21: 0.3451 S22: -0.1299 S23: -0.1034 REMARK 3 S31: -0.3990 S32: 0.1765 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1624 23.9030 47.4925 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: -0.0927 REMARK 3 T33: 0.0483 T12: 0.0115 REMARK 3 T13: -0.0351 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 4.2184 L22: 9.2552 REMARK 3 L33: 3.9887 L12: -1.5845 REMARK 3 L13: 0.1474 L23: -1.4801 REMARK 3 S TENSOR REMARK 3 S11: 0.1353 S12: -0.0863 S13: 0.1842 REMARK 3 S21: -0.3142 S22: -0.0326 S23: 0.4666 REMARK 3 S31: 0.0301 S32: -0.0550 S33: -0.1027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4022 6.1490 45.0214 REMARK 3 T TENSOR REMARK 3 T11: -0.0973 T22: -0.1091 REMARK 3 T33: -0.1245 T12: 0.0141 REMARK 3 T13: -0.0567 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 2.9642 L22: 5.8113 REMARK 3 L33: 3.7161 L12: -0.3394 REMARK 3 L13: 1.2508 L23: 0.0266 REMARK 3 S TENSOR REMARK 3 S11: -0.1304 S12: -0.2929 S13: 0.2443 REMARK 3 S21: 0.2335 S22: -0.0314 S23: -0.0047 REMARK 3 S31: -0.3756 S32: 0.1281 S33: 0.1618 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2961 1.6738 42.7268 REMARK 3 T TENSOR REMARK 3 T11: -0.1583 T22: -0.1490 REMARK 3 T33: -0.0949 T12: 0.0652 REMARK 3 T13: -0.0077 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 8.8939 L22: 2.5453 REMARK 3 L33: 16.4446 L12: 4.3934 REMARK 3 L13: 8.6834 L23: 3.7547 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.1331 S13: 0.0748 REMARK 3 S21: 0.0238 S22: -0.0721 S23: 0.1410 REMARK 3 S31: -0.0405 S32: -0.3217 S33: 0.1826 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9318 11.6416 46.3851 REMARK 3 T TENSOR REMARK 3 T11: 0.0250 T22: -0.0720 REMARK 3 T33: -0.0429 T12: 0.0057 REMARK 3 T13: -0.0076 T23: -0.1135 REMARK 3 L TENSOR REMARK 3 L11: 8.2918 L22: 3.0337 REMARK 3 L33: 3.3686 L12: -3.8326 REMARK 3 L13: 1.0593 L23: -2.1457 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.1086 S13: 0.2160 REMARK 3 S21: 0.0300 S22: 0.0083 S23: -0.1426 REMARK 3 S31: -0.5617 S32: 0.0301 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5661 -2.7476 44.3431 REMARK 3 T TENSOR REMARK 3 T11: -0.1211 T22: 0.0475 REMARK 3 T33: -0.1412 T12: 0.0640 REMARK 3 T13: -0.0369 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.5963 L22: 2.5153 REMARK 3 L33: 4.5900 L12: 0.7318 REMARK 3 L13: 0.7764 L23: 1.4789 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.2081 S13: -0.1272 REMARK 3 S21: -0.0682 S22: 0.0816 S23: -0.0686 REMARK 3 S31: 0.2264 S32: 0.7988 S33: -0.1147 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4571 -3.2990 33.0952 REMARK 3 T TENSOR REMARK 3 T11: -0.0821 T22: -0.0546 REMARK 3 T33: -0.1255 T12: 0.0291 REMARK 3 T13: -0.0441 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.3454 L22: 4.2406 REMARK 3 L33: 4.4387 L12: -1.5161 REMARK 3 L13: -0.0388 L23: -1.1774 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.1354 S13: -0.0400 REMARK 3 S21: -0.3574 S22: 0.0304 S23: -0.1745 REMARK 3 S31: 0.2228 S32: 0.5335 S33: -0.0100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB039193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951, 0.97962 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, CCP4, O, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M NAH2PO4, 1.2M K2HPO4, 0.1M REMARK 280 ACETATE PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.55950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.55950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.17600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.55950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.17600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.55950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL REMARK 300 UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 41.92100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.17600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 456 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 LYS A 231 REMARK 465 GLY A 232 REMARK 465 HIS A 233 REMARK 465 THR A 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 187 O HOH A 503 3655 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 83 46.63 -79.50 REMARK 500 ALA A 92 96.32 -64.40 REMARK 500 GLU A 93 111.55 -31.63 REMARK 500 SER A 226 40.29 -147.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 529 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 5.65 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80860 RELATED DB: TARGETDB DBREF 2I6D A 1 254 UNP Q7MW92 Q7MW92_PORGI 1 254 SEQADV 2I6D SER A -2 UNP Q7MW92 CLONING ARTIFACT SEQADV 2I6D ASN A -1 UNP Q7MW92 CLONING ARTIFACT SEQADV 2I6D ALA A 0 UNP Q7MW92 CLONING ARTIFACT SEQADV 2I6D MSE A 1 UNP Q7MW92 MET 1 MODIFIED RESIDUE SEQADV 2I6D MSE A 36 UNP Q7MW92 MET 36 MODIFIED RESIDUE SEQADV 2I6D MSE A 44 UNP Q7MW92 MET 44 MODIFIED RESIDUE SEQADV 2I6D MSE A 51 UNP Q7MW92 MET 51 MODIFIED RESIDUE SEQADV 2I6D MSE A 85 UNP Q7MW92 MET 85 MODIFIED RESIDUE SEQADV 2I6D MSE A 148 UNP Q7MW92 MET 148 MODIFIED RESIDUE SEQRES 1 A 257 SER ASN ALA MSE LEU SER ALA ASN GLN ILE LYS PHE LEU SEQRES 2 A 257 ARG SER LEU ARG GLU ARG LYS TYR ARG LEU ARG GLU GLN SEQRES 3 A 257 ALA PHE ALA VAL GLU GLY PRO LYS LEU VAL GLY GLU MSE SEQRES 4 A 257 LEU PRO PHE TYR ARG CYS ARG MSE LEU VAL GLY THR ALA SEQRES 5 A 257 ALA MSE LEU ARG ALA VAL SER THR PRO HIS ASP ALA GLU SEQRES 6 A 257 VAL VAL GLU LEU PRO GLU SER PHE ASP PHE LYS ARG ILE SEQRES 7 A 257 SER THR GLN THR THR PRO GLN PRO LEU MSE ALA VAL PHE SEQRES 8 A 257 ASP LEU PRO ALA GLU PRO GLU PRO VAL VAL GLU GLY LEU SEQRES 9 A 257 THR LEU LEU LEU ASP GLY VAL GLN ASP PRO GLY ASN VAL SEQRES 10 A 257 GLY THR ILE LEU ARG THR ALA ASP TRP PHE GLY ILE ARG SEQRES 11 A 257 HIS VAL TRP LEU GLY THR GLY SER ALA ASP VAL PHE SER SEQRES 12 A 257 PRO LYS VAL VAL GLN ALA SER MSE GLY ALA LEU ALA ARG SEQRES 13 A 257 VAL GLN PRO THR PRO LEU LYS ASN THR VAL ASP THR LEU SEQRES 14 A 257 ALA TYR PHE ARG ARG GLN GLY ILE PRO VAL TYR GLY ALA SEQRES 15 A 257 PHE LEU ASP GLY GLN SER LEU TYR GLU ALA PRO LEU PRO SEQRES 16 A 257 ASN PHE THR GLU PRO ALA ILE LEU VAL LEU GLY SER GLU SEQRES 17 A 257 GLY ARG GLY ILE SER PRO GLU VAL ALA ALA GLU ILE THR SEQRES 18 A 257 ASP ARG LEU THR ILE PRO ALA SER GLY LEU SER VAL LYS SEQRES 19 A 257 GLY HIS THR GLU SER LEU ASN VAL ALA ILE ALA THR ALA SEQRES 20 A 257 ILE LEU CYS SER GLU TRP ARG ARG ARG SER MODRES 2I6D MSE A 1 MET SELENOMETHIONINE MODRES 2I6D MSE A 36 MET SELENOMETHIONINE MODRES 2I6D MSE A 44 MET SELENOMETHIONINE MODRES 2I6D MSE A 51 MET SELENOMETHIONINE MODRES 2I6D MSE A 85 MET SELENOMETHIONINE MODRES 2I6D MSE A 148 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 36 16 HET MSE A 44 8 HET MSE A 51 8 HET MSE A 85 8 HET MSE A 148 16 HET ACY A 301 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ACY C2 H4 O2 FORMUL 3 HOH *315(H2 O) HELIX 1 1 SER A 3 LEU A 13 1 11 HELIX 2 2 GLU A 15 GLN A 23 1 9 HELIX 3 3 GLY A 29 LEU A 37 1 9 HELIX 4 4 PRO A 38 TYR A 40 5 3 HELIX 5 5 ALA A 49 ALA A 54 1 6 HELIX 6 6 ASP A 71 ILE A 75 5 5 HELIX 7 7 ASP A 110 GLY A 125 1 16 HELIX 8 8 SER A 140 ALA A 146 1 7 HELIX 9 9 GLY A 149 ARG A 153 5 5 HELIX 10 10 ASN A 161 GLN A 172 1 12 HELIX 11 11 SER A 210 ALA A 215 1 6 HELIX 12 12 ASN A 238 ARG A 253 1 16 SHEET 1 A 4 ALA A 24 GLU A 28 0 SHEET 2 A 4 LEU A 84 ASP A 89 -1 O ALA A 86 N VAL A 27 SHEET 3 A 4 CYS A 42 THR A 48 -1 N MSE A 44 O VAL A 87 SHEET 4 A 4 GLU A 62 LEU A 66 1 O LEU A 66 N GLY A 47 SHEET 1 B 7 GLN A 155 PRO A 158 0 SHEET 2 B 7 HIS A 128 LEU A 131 1 N LEU A 131 O THR A 157 SHEET 3 B 7 LEU A 101 ASP A 106 1 N LEU A 103 O TRP A 130 SHEET 4 B 7 ALA A 198 GLY A 203 1 O LEU A 202 N LEU A 104 SHEET 5 B 7 VAL A 176 ALA A 179 1 N TYR A 177 O ILE A 199 SHEET 6 B 7 ASP A 219 THR A 222 1 O LEU A 221 N GLY A 178 SHEET 7 B 7 GLN A 184 SER A 185 1 N GLN A 184 O THR A 222 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C GLU A 35 N AMSE A 36 1555 1555 1.33 LINK C GLU A 35 N BMSE A 36 1555 1555 1.34 LINK C AMSE A 36 N LEU A 37 1555 1555 1.33 LINK C BMSE A 36 N LEU A 37 1555 1555 1.33 LINK C ARG A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C ALA A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N LEU A 52 1555 1555 1.33 LINK C LEU A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N ALA A 86 1555 1555 1.33 LINK C SER A 147 N BMSE A 148 1555 1555 1.33 LINK C SER A 147 N AMSE A 148 1555 1555 1.33 LINK C BMSE A 148 N GLY A 149 1555 1555 1.33 LINK C AMSE A 148 N GLY A 149 1555 1555 1.33 SITE 1 AC1 9 GLY A 107 VAL A 108 GLN A 109 ASP A 110 SITE 2 AC1 9 ASN A 113 SER A 204 ARG A 207 HOH A 320 SITE 3 AC1 9 HOH A 536 CRYST1 41.921 107.119 120.352 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008309 0.00000