HEADER LYASE 29-AUG-06 2I6Y TITLE STRUCTURE AND MECHANISM OF MYCOBACTERIUM TUBERCULOSIS SALICYLATE TITLE 2 SYNTHASE, MBTI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE SYNTHASE COMPONENT I, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE ISOCHORISMATE SYNTHASE, SALICYLATE SYNTHASE; COMPND 5 EC: 4.1.3.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MBTI, MT2454, RV2386C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BETA SHEET, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZWAHLEN,K.SUBRAMANIAPILLAI,R.ZHOU,C.KISKER,P.J.TONGE REVDAT 5 21-FEB-24 2I6Y 1 SEQADV REVDAT 4 18-OCT-17 2I6Y 1 REMARK REVDAT 3 13-JUL-11 2I6Y 1 VERSN REVDAT 2 24-FEB-09 2I6Y 1 VERSN REVDAT 1 19-JUN-07 2I6Y 0 JRNL AUTH J.ZWAHLEN,S.KOLAPPAN,R.ZHOU,C.KISKER,P.J.TONGE JRNL TITL STRUCTURE AND MECHANISM OF MBTI, THE SALICYLATE SYNTHASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF BIOCHEMISTRY V. 46 954 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17240979 JRNL DOI 10.1021/BI060852X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.4220 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 64.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.14000 REMARK 3 B22 (A**2) : 2.07000 REMARK 3 B33 (A**2) : -5.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.681 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.344 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.331 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3142 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4281 ; 1.822 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 8.278 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;31.837 ;22.283 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;21.947 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2404 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1467 ; 0.255 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2125 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2125 ; 0.622 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3303 ; 1.094 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 1.649 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 978 ; 2.688 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 449 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1700 48.4690 72.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.0720 REMARK 3 T33: -0.0313 T12: 0.0127 REMARK 3 T13: -0.0422 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.2456 L22: 2.2968 REMARK 3 L33: 2.2485 L12: 0.0220 REMARK 3 L13: -0.1781 L23: -1.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.1782 S13: -0.0301 REMARK 3 S21: -0.4364 S22: -0.0100 S23: 0.1087 REMARK 3 S31: 0.1270 S32: 0.0013 S33: -0.0299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0698, 0.9745, 0.97971 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM ACETATE REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.87950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.87950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.80150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.80150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.87950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.80150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.87950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.80150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 PRO A 278 REMARK 465 ALA A 279 REMARK 465 ILE A 280 REMARK 465 ASP A 281 REMARK 465 ARG A 282 REMARK 465 LEU A 283 REMARK 465 ALA A 284 REMARK 465 ARG A 285 REMARK 465 ASP A 286 REMARK 465 GLU A 328 REMARK 465 ARG A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 24 CG1 CG2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 SER A 40 OG REMARK 470 VAL A 41 CG1 CG2 REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 155 CG1 CG2 CD1 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 VAL A 178 CG1 CG2 REMARK 470 ILE A 218 CG1 CG2 CD1 REMARK 470 LEU A 222 CG CD1 CD2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 THR A 232 OG1 CG2 REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 VAL A 332 CG1 CG2 REMARK 470 HIS A 334 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 ARG A 430 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 108 O VAL A 389 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 159 CD GLU A 159 OE2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 21 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU A 247 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 -10.23 -41.24 REMARK 500 ALA A 22 113.24 72.32 REMARK 500 VAL A 41 -128.47 -92.85 REMARK 500 ASP A 51 -20.13 64.77 REMARK 500 ARG A 75 -117.07 -106.68 REMARK 500 ASP A 76 56.92 -92.23 REMARK 500 SER A 85 -115.98 -109.87 REMARK 500 ARG A 87 98.50 29.78 REMARK 500 ARG A 124 0.30 -64.34 REMARK 500 THR A 167 -171.61 -68.57 REMARK 500 ASP A 183 -112.59 -80.39 REMARK 500 ARG A 188 -77.45 147.71 REMARK 500 PRO A 215 -70.35 -61.04 REMARK 500 THR A 232 83.85 60.21 REMARK 500 LEU A 241 -74.42 -114.85 REMARK 500 ASN A 291 26.84 -71.23 REMARK 500 ASP A 311 6.46 -59.69 REMARK 500 ILE A 312 -4.18 -140.18 REMARK 500 ASP A 344 165.75 132.48 REMARK 500 PRO A 345 84.12 12.21 REMARK 500 SER A 346 -18.82 123.89 REMARK 500 SER A 363 -68.25 -126.88 REMARK 500 LYS A 367 -65.09 129.11 REMARK 500 LEU A 384 -46.10 110.52 REMARK 500 ALA A 388 -145.97 177.53 REMARK 500 VAL A 390 114.66 76.57 REMARK 500 LEU A 404 -122.66 -112.65 REMARK 500 ARG A 405 109.57 -27.52 REMARK 500 LEU A 446 2.24 -66.07 REMARK 500 VAL A 447 97.77 11.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 41 ASP A 42 146.03 REMARK 500 ASP A 344 PRO A 345 38.50 REMARK 500 GLY A 387 ALA A 388 143.17 REMARK 500 ALA A 388 VAL A 389 -146.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 2I6Y A 2 450 UNP Q7D785 Q7D785_MYCTU 2 450 SEQADV 2I6Y MET A -19 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y GLY A -18 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y SER A -17 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y SER A -16 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y HIS A -15 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y HIS A -14 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y HIS A -13 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y HIS A -12 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y HIS A -11 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y HIS A -10 UNP Q7D785 EXPRESSION TAG SEQADV 2I6Y SER A -9 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y SER A -8 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y GLY A -7 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y LEU A -6 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y VAL A -5 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y PRO A -4 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y ARG A -3 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y GLY A -2 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y SER A -1 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y HIS A 0 UNP Q7D785 CLONING ARTIFACT SEQADV 2I6Y VAL A 1 UNP Q7D785 CLONING ARTIFACT SEQRES 1 A 470 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 470 LEU VAL PRO ARG GLY SER HIS VAL SER GLU LEU SER VAL SEQRES 3 A 470 ALA THR GLY ALA VAL SER THR ALA SER SER SER ILE PRO SEQRES 4 A 470 MET PRO ALA GLY VAL ASN PRO ALA ASP LEU ALA ALA GLU SEQRES 5 A 470 LEU ALA ALA VAL VAL THR GLU SER VAL ASP GLU ASP TYR SEQRES 6 A 470 LEU LEU TYR GLU CYS ASP GLY GLN TRP VAL LEU ALA ALA SEQRES 7 A 470 GLY VAL GLN ALA MET VAL GLU LEU ASP SER ASP GLU LEU SEQRES 8 A 470 ARG VAL ILE ARG ASP GLY VAL THR ARG ARG GLN GLN TRP SEQRES 9 A 470 SER GLY ARG PRO GLY ALA ALA LEU GLY GLU ALA VAL ASP SEQRES 10 A 470 ARG LEU LEU LEU GLU THR ASP GLN ALA PHE GLY TRP VAL SEQRES 11 A 470 ALA PHE GLU PHE GLY VAL HIS ARG TYR GLY LEU GLN GLN SEQRES 12 A 470 ARG LEU ALA PRO HIS THR PRO LEU ALA ARG VAL PHE SER SEQRES 13 A 470 PRO ARG THR ARG ILE MET VAL SER GLU LYS GLU ILE ARG SEQRES 14 A 470 LEU PHE ASP ALA GLY ILE ARG HIS ARG GLU ALA ILE ASP SEQRES 15 A 470 ARG LEU LEU ALA THR GLY VAL ARG GLU VAL PRO GLN SER SEQRES 16 A 470 ARG SER VAL ASP VAL SER ASP ASP PRO SER GLY PHE ARG SEQRES 17 A 470 ARG ARG VAL ALA VAL ALA VAL ASP GLU ILE ALA ALA GLY SEQRES 18 A 470 ARG TYR HIS LYS VAL ILE LEU SER ARG CYS VAL GLU VAL SEQRES 19 A 470 PRO PHE ALA ILE ASP PHE PRO LEU THR TYR ARG LEU GLY SEQRES 20 A 470 ARG ARG HIS ASN THR PRO VAL ARG SER PHE LEU LEU GLN SEQRES 21 A 470 LEU GLY GLY ILE ARG ALA LEU GLY TYR SER PRO GLU LEU SEQRES 22 A 470 VAL THR ALA VAL ARG ALA ASP GLY VAL VAL ILE THR GLU SEQRES 23 A 470 PRO LEU ALA GLY THR ARG ALA LEU GLY ARG GLY PRO ALA SEQRES 24 A 470 ILE ASP ARG LEU ALA ARG ASP ASP LEU GLU SER ASN SER SEQRES 25 A 470 LYS GLU ILE VAL GLU HIS ALA ILE SER VAL ARG SER SER SEQRES 26 A 470 LEU GLU GLU ILE THR ASP ILE ALA GLU PRO GLY SER ALA SEQRES 27 A 470 ALA VAL ILE ASP PHE MET THR VAL ARG GLU ARG GLY SER SEQRES 28 A 470 VAL GLN HIS LEU GLY SER THR ILE ARG ALA ARG LEU ASP SEQRES 29 A 470 PRO SER SER ASP ARG MET ALA ALA LEU GLU ALA LEU PHE SEQRES 30 A 470 PRO ALA VAL THR ALA SER GLY ILE PRO LYS ALA ALA GLY SEQRES 31 A 470 VAL GLU ALA ILE PHE ARG LEU ASP GLU CYS PRO ARG GLY SEQRES 32 A 470 LEU TYR SER GLY ALA VAL VAL MET LEU SER ALA ASP GLY SEQRES 33 A 470 GLY LEU ASP ALA ALA LEU THR LEU ARG ALA ALA TYR GLN SEQRES 34 A 470 VAL GLY GLY ARG THR TRP LEU ARG ALA GLY ALA GLY ILE SEQRES 35 A 470 ILE GLU GLU SER GLU PRO GLU ARG GLU PHE GLU GLU THR SEQRES 36 A 470 CYS GLU LYS LEU SER THR LEU THR PRO TYR LEU VAL ALA SEQRES 37 A 470 ARG GLN FORMUL 2 HOH *3(H2 O) HELIX 1 1 ASN A 25 VAL A 41 1 17 HELIX 2 2 ARG A 87 LEU A 100 1 14 HELIX 3 3 PHE A 112 HIS A 117 5 6 HELIX 4 4 LEU A 121 LEU A 125 5 5 HELIX 5 5 GLY A 154 THR A 167 1 14 HELIX 6 6 ARG A 188 ALA A 200 1 13 HELIX 7 7 ASP A 219 THR A 232 1 14 HELIX 8 8 GLY A 270 GLY A 275 1 6 HELIX 9 9 ASN A 291 ASP A 311 1 21 HELIX 10 10 ASP A 348 LEU A 356 1 9 HELIX 11 11 ALA A 359 ALA A 362 5 4 HELIX 12 12 LYS A 367 ASP A 378 1 12 HELIX 13 13 GLU A 427 SER A 440 1 14 HELIX 14 14 THR A 441 LEU A 446 5 6 SHEET 1 A11 ILE A 18 PRO A 19 0 SHEET 2 A11 GLU A 147 PHE A 151 -1 O ILE A 148 N ILE A 18 SHEET 3 A11 ARG A 140 VAL A 143 -1 N ARG A 140 O PHE A 151 SHEET 4 A11 GLN A 53 ALA A 57 -1 N TRP A 54 O VAL A 143 SHEET 5 A11 TYR A 45 CYS A 50 -1 N TYR A 48 O VAL A 55 SHEET 6 A11 ARG A 235 GLN A 240 -1 O LEU A 238 N LEU A 47 SHEET 7 A11 ILE A 244 GLY A 248 -1 O ALA A 246 N LEU A 239 SHEET 8 A11 ALA A 406 VAL A 410 -1 O GLN A 409 N ARG A 245 SHEET 9 A11 ARG A 413 ILE A 423 -1 O TRP A 415 N TYR A 408 SHEET 10 A11 LYS A 205 VAL A 214 -1 N VAL A 206 O ILE A 422 SHEET 11 A11 GLY A 364 ILE A 365 -1 O ILE A 365 N LYS A 205 SHEET 1 B11 THR A 79 GLN A 82 0 SHEET 2 B11 LEU A 71 ILE A 74 -1 N LEU A 71 O GLN A 82 SHEET 3 B11 ALA A 62 ASP A 67 -1 N GLU A 65 O ARG A 72 SHEET 4 B11 PRO A 130 SER A 136 -1 O VAL A 134 N VAL A 64 SHEET 5 B11 GLN A 105 VAL A 110 -1 N TRP A 109 O ARG A 133 SHEET 6 B11 GLY A 387 ALA A 388 -1 O ALA A 388 N VAL A 110 SHEET 7 B11 LEU A 398 THR A 403 -1 O THR A 403 N GLY A 387 SHEET 8 B11 GLU A 252 VAL A 257 -1 N THR A 255 O ALA A 400 SHEET 9 B11 VAL A 262 THR A 265 -1 O ILE A 264 N ALA A 256 SHEET 10 B11 LEU A 335 ARG A 342 -1 O ILE A 339 N THR A 265 SHEET 11 B11 ALA A 319 VAL A 326 -1 N ALA A 319 O ARG A 340 SHEET 1 C11 THR A 79 GLN A 82 0 SHEET 2 C11 LEU A 71 ILE A 74 -1 N LEU A 71 O GLN A 82 SHEET 3 C11 ALA A 62 ASP A 67 -1 N GLU A 65 O ARG A 72 SHEET 4 C11 PRO A 130 SER A 136 -1 O VAL A 134 N VAL A 64 SHEET 5 C11 GLN A 105 VAL A 110 -1 N TRP A 109 O ARG A 133 SHEET 6 C11 MET A 391 SER A 393 -1 O LEU A 392 N ALA A 106 SHEET 7 C11 LEU A 398 THR A 403 -1 O ASP A 399 N MET A 391 SHEET 8 C11 GLU A 252 VAL A 257 -1 N THR A 255 O ALA A 400 SHEET 9 C11 VAL A 262 THR A 265 -1 O ILE A 264 N ALA A 256 SHEET 10 C11 LEU A 335 ARG A 342 -1 O ILE A 339 N THR A 265 SHEET 11 C11 ALA A 319 VAL A 326 -1 N ALA A 319 O ARG A 340 CISPEP 1 ASP A 183 PRO A 184 0 -1.08 CISPEP 2 PHE A 357 PRO A 358 0 -7.07 CISPEP 3 ILE A 365 PRO A 366 0 -5.15 CISPEP 4 CYS A 380 PRO A 381 0 0.61 CRYST1 49.206 143.603 123.759 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008080 0.00000