HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-AUG-06 2I71 TITLE CRYSTAL STRUCTURE OF A CONSERVED PROTEIN OF UNKNOWN FUNCTION FROM TITLE 2 SULFOLOBUS SOLFATARICUS P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: SSO1389; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, APC6294, CONSERVED HYPOTHETICAL PROTEIN, KEYWDS 2 SULFOLOBUS SOLFATARICUS P2, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-NOV-24 2I71 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2I71 1 VERSN REVDAT 2 24-FEB-09 2I71 1 VERSN REVDAT 1 03-OCT-06 2I71 0 JRNL AUTH K.TAN,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN JRNL TITL 2 FROM SULFOLOBUS SOLFATARICUS P2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 75708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 786 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.165 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6115 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8256 ; 1.533 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 743 ; 5.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;38.371 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;14.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4535 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3152 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4333 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 663 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 133 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3827 ; 1.194 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6001 ; 1.818 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 3.097 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2255 ; 4.582 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MGCL2, 0.1M BISTRIS, REMARK 280 2% TACSIMATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.42450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.25650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.25650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.42450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.45900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 2 CHAINS. THE AUTHOR STATES REMARK 300 THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 42.45900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.25650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 LYS A 331 REMARK 465 VAL A 332 REMARK 465 GLU A 333 REMARK 465 GLY A 334 REMARK 465 LYS A 335 REMARK 465 GLY A 336 REMARK 465 PHE A 337 REMARK 465 ASP A 338 REMARK 465 LYS A 339 REMARK 465 GLY A 378 REMARK 465 SER A 379 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B 337 REMARK 465 ASP B 338 REMARK 465 LYS B 339 REMARK 465 ARG B 340 REMARK 465 GLY B 378 REMARK 465 SER B 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A -1 -84.10 -127.46 REMARK 500 GLN A 93 -118.91 51.44 REMARK 500 ASN A 131 -125.29 43.33 REMARK 500 PHE A 205 30.23 -97.56 REMARK 500 ASP A 211 17.66 59.06 REMARK 500 SER A 256 -159.21 -102.83 REMARK 500 TYR A 264 -128.25 -121.06 REMARK 500 LYS A 359 -86.13 4.69 REMARK 500 GLN B -1 -80.80 -107.41 REMARK 500 GLN B 93 -117.98 52.52 REMARK 500 ASN B 131 -123.10 44.27 REMARK 500 GLU B 153 70.50 55.50 REMARK 500 GLU B 257 98.92 -57.76 REMARK 500 TYR B 264 -126.86 -118.75 REMARK 500 PHE B 282 36.10 -94.19 REMARK 500 LEU B 348 54.72 -117.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 358 LYS A 359 -139.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 68 NZ REMARK 620 2 VAL A 87 N 128.1 REMARK 620 3 TYR A 105 OH 97.0 105.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6294 RELATED DB: TARGETDB DBREF 2I71 A 1 377 UNP Q97YD5 Q97YD5_SULSO 1 377 DBREF 2I71 B 1 377 UNP Q97YD5 Q97YD5_SULSO 1 377 SEQADV 2I71 MSE A -20 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY A -19 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER A -18 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER A -17 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 HIS A -16 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS A -15 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS A -14 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS A -13 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS A -12 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS A -11 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 SER A -10 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER A -9 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY A -8 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 ARG A -7 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLU A -6 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 ASN A -5 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 LEU A -4 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 TYR A -3 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 PHE A -2 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLN A -1 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY A 0 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 MSE A 1 UNP Q97YD5 MET 1 MODIFIED RESIDUE SEQADV 2I71 MSE A 133 UNP Q97YD5 MET 133 MODIFIED RESIDUE SEQADV 2I71 MSE A 267 UNP Q97YD5 MET 267 MODIFIED RESIDUE SEQADV 2I71 MSE A 319 UNP Q97YD5 MET 319 MODIFIED RESIDUE SEQADV 2I71 MSE A 330 UNP Q97YD5 MET 330 MODIFIED RESIDUE SEQADV 2I71 GLY A 378 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER A 379 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 MSE B -20 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY B -19 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER B -18 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER B -17 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 HIS B -16 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS B -15 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS B -14 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS B -13 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS B -12 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 HIS B -11 UNP Q97YD5 EXPRESSION TAG SEQADV 2I71 SER B -10 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER B -9 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY B -8 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 ARG B -7 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLU B -6 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 ASN B -5 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 LEU B -4 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 TYR B -3 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 PHE B -2 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLN B -1 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 GLY B 0 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 MSE B 1 UNP Q97YD5 MET 1 MODIFIED RESIDUE SEQADV 2I71 MSE B 133 UNP Q97YD5 MET 133 MODIFIED RESIDUE SEQADV 2I71 MSE B 267 UNP Q97YD5 MET 267 MODIFIED RESIDUE SEQADV 2I71 MSE B 319 UNP Q97YD5 MET 319 MODIFIED RESIDUE SEQADV 2I71 MSE B 330 UNP Q97YD5 MET 330 MODIFIED RESIDUE SEQADV 2I71 GLY B 378 UNP Q97YD5 CLONING ARTIFACT SEQADV 2I71 SER B 379 UNP Q97YD5 CLONING ARTIFACT SEQRES 1 A 400 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 400 ARG GLU ASN LEU TYR PHE GLN GLY MSE ALA SER ILE VAL SEQRES 3 A 400 PHE SER THR ILE GLY ASN PRO LYS GLY TYR GLN LYS VAL SEQRES 4 A 400 THR TYR GLU ILE ASP GLY GLU LYS PHE GLU SER ASN VAL SEQRES 5 A 400 SER VAL LEU ALA LEU ARG ASP LEU LEU LYS VAL ASP LYS SEQRES 6 A 400 THR VAL VAL ILE LEU GLY ILE SER VAL ALA ASP VAL TYR SEQRES 7 A 400 ASN CYS LYS TYR ALA ASP TYR ARG SER CYS LYS GLU CYS SEQRES 8 A 400 ILE ILE GLN ASN SER LYS ASN ASP LEU GLY ILE SER GLU SEQRES 9 A 400 SER TYR VAL VAL ALA PRO ASN VAL TYR GLN LYS PHE LYS SEQRES 10 A 400 GLY LYS PRO ASP HIS TYR PHE THR TYR ILE TYR TYR HIS SEQRES 11 A 400 SER LEU ARG ILE LEU GLU LYS GLU GLY ILE ASN GLU VAL SEQRES 12 A 400 PHE ILE ASP THR THR HIS GLY ILE ASN TYR MSE GLY VAL SEQRES 13 A 400 LEU ALA LYS GLU ALA ILE GLN LEU ALA VAL SER ALA TYR SEQRES 14 A 400 ALA ALA LYS SER GLU LYS GLU VAL LYS VAL SER LEU TYR SEQRES 15 A 400 ASN SER ASP PRO VAL GLY LYS ASP VAL SER ASP THR VAL SEQRES 16 A 400 LYS LEU HIS GLU ILE GLU ALA ILE LYS ILE SER PRO LEU SEQRES 17 A 400 SER GLY LEU LYS TYR VAL THR TYR GLN ILE LEU ASN LYS SEQRES 18 A 400 ASP LYS ASN PHE PHE ASN LYS ILE PHE SER ASP SER VAL SEQRES 19 A 400 ASN ALA ILE PRO ARG PHE ALA THR ALA LEU ASP ASN GLY SEQRES 20 A 400 LEU PHE ILE TYR LEU SER GLU LYS ASP SER SER LEU HIS SEQRES 21 A 400 LEU LYS ARG LEU GLU ASP ASP LEU SER LYS ASP PRO LEU SEQRES 22 A 400 LEU THR PRO SER GLU ASN GLU ILE ASN VAL VAL TYR LYS SEQRES 23 A 400 ASP MSE LYS TYR ALA LEU SER HIS ALA LEU PHE TYR VAL SEQRES 24 A 400 ILE SER ARG PHE SER GLY ASN VAL ASP LEU ASP THR LEU SEQRES 25 A 400 ARG HIS TYR ALA GLU THR TYR ALA ASP LYS VAL THR ARG SEQRES 26 A 400 ALA ILE ILE GLU ASN GLU VAL ASP LYS ILE GLU LYS TYR SEQRES 27 A 400 GLN MSE GLY SER GLU ARG LYS LEU LEU GLY GLU TYR MSE SEQRES 28 A 400 LYS VAL GLU GLY LYS GLY PHE ASP LYS ARG ILE LEU TYR SEQRES 29 A 400 ALA HIS GLY GLY LEU PRO TYR ALA GLY THR TYR VAL TYR SEQRES 30 A 400 LYS GLU LYS ASP LYS VAL TYR VAL THR TYR GLY ASP LYS SEQRES 31 A 400 ILE ASP GLU ILE GLU ARG GLN ILE GLY SER SEQRES 1 B 400 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 400 ARG GLU ASN LEU TYR PHE GLN GLY MSE ALA SER ILE VAL SEQRES 3 B 400 PHE SER THR ILE GLY ASN PRO LYS GLY TYR GLN LYS VAL SEQRES 4 B 400 THR TYR GLU ILE ASP GLY GLU LYS PHE GLU SER ASN VAL SEQRES 5 B 400 SER VAL LEU ALA LEU ARG ASP LEU LEU LYS VAL ASP LYS SEQRES 6 B 400 THR VAL VAL ILE LEU GLY ILE SER VAL ALA ASP VAL TYR SEQRES 7 B 400 ASN CYS LYS TYR ALA ASP TYR ARG SER CYS LYS GLU CYS SEQRES 8 B 400 ILE ILE GLN ASN SER LYS ASN ASP LEU GLY ILE SER GLU SEQRES 9 B 400 SER TYR VAL VAL ALA PRO ASN VAL TYR GLN LYS PHE LYS SEQRES 10 B 400 GLY LYS PRO ASP HIS TYR PHE THR TYR ILE TYR TYR HIS SEQRES 11 B 400 SER LEU ARG ILE LEU GLU LYS GLU GLY ILE ASN GLU VAL SEQRES 12 B 400 PHE ILE ASP THR THR HIS GLY ILE ASN TYR MSE GLY VAL SEQRES 13 B 400 LEU ALA LYS GLU ALA ILE GLN LEU ALA VAL SER ALA TYR SEQRES 14 B 400 ALA ALA LYS SER GLU LYS GLU VAL LYS VAL SER LEU TYR SEQRES 15 B 400 ASN SER ASP PRO VAL GLY LYS ASP VAL SER ASP THR VAL SEQRES 16 B 400 LYS LEU HIS GLU ILE GLU ALA ILE LYS ILE SER PRO LEU SEQRES 17 B 400 SER GLY LEU LYS TYR VAL THR TYR GLN ILE LEU ASN LYS SEQRES 18 B 400 ASP LYS ASN PHE PHE ASN LYS ILE PHE SER ASP SER VAL SEQRES 19 B 400 ASN ALA ILE PRO ARG PHE ALA THR ALA LEU ASP ASN GLY SEQRES 20 B 400 LEU PHE ILE TYR LEU SER GLU LYS ASP SER SER LEU HIS SEQRES 21 B 400 LEU LYS ARG LEU GLU ASP ASP LEU SER LYS ASP PRO LEU SEQRES 22 B 400 LEU THR PRO SER GLU ASN GLU ILE ASN VAL VAL TYR LYS SEQRES 23 B 400 ASP MSE LYS TYR ALA LEU SER HIS ALA LEU PHE TYR VAL SEQRES 24 B 400 ILE SER ARG PHE SER GLY ASN VAL ASP LEU ASP THR LEU SEQRES 25 B 400 ARG HIS TYR ALA GLU THR TYR ALA ASP LYS VAL THR ARG SEQRES 26 B 400 ALA ILE ILE GLU ASN GLU VAL ASP LYS ILE GLU LYS TYR SEQRES 27 B 400 GLN MSE GLY SER GLU ARG LYS LEU LEU GLY GLU TYR MSE SEQRES 28 B 400 LYS VAL GLU GLY LYS GLY PHE ASP LYS ARG ILE LEU TYR SEQRES 29 B 400 ALA HIS GLY GLY LEU PRO TYR ALA GLY THR TYR VAL TYR SEQRES 30 B 400 LYS GLU LYS ASP LYS VAL TYR VAL THR TYR GLY ASP LYS SEQRES 31 B 400 ILE ASP GLU ILE GLU ARG GLN ILE GLY SER MODRES 2I71 MSE A 1 MET SELENOMETHIONINE MODRES 2I71 MSE A 133 MET SELENOMETHIONINE MODRES 2I71 MSE A 267 MET SELENOMETHIONINE MODRES 2I71 MSE A 319 MET SELENOMETHIONINE MODRES 2I71 MSE A 330 MET SELENOMETHIONINE MODRES 2I71 MSE B 1 MET SELENOMETHIONINE MODRES 2I71 MSE B 133 MET SELENOMETHIONINE MODRES 2I71 MSE B 267 MET SELENOMETHIONINE MODRES 2I71 MSE B 319 MET SELENOMETHIONINE MODRES 2I71 MSE B 330 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 133 8 HET MSE A 267 8 HET MSE A 319 8 HET MSE A 330 8 HET MSE B 1 8 HET MSE B 133 8 HET MSE B 267 8 HET MSE B 319 8 HET MSE B 330 8 HET MG A 402 1 HET MG B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *786(H2 O) HELIX 1 1 VAL A 31 LEU A 40 1 10 HELIX 2 2 SER A 52 ASN A 58 5 7 HELIX 3 3 ASP A 63 GLY A 80 1 18 HELIX 4 4 PRO A 99 GLY A 118 1 20 HELIX 5 5 TYR A 132 GLU A 153 1 22 HELIX 6 6 SER A 185 ASN A 199 1 15 HELIX 7 7 ASP A 211 ASN A 225 1 15 HELIX 8 8 LEU A 227 LYS A 234 1 8 HELIX 9 9 SER A 236 LYS A 249 1 14 HELIX 10 10 ASP A 266 SER A 280 1 15 HELIX 11 11 ARG A 281 SER A 283 5 3 HELIX 12 12 LEU A 288 ALA A 299 1 12 HELIX 13 13 ASP A 300 GLU A 315 1 16 HELIX 14 14 GLY A 327 TYR A 329 5 3 HELIX 15 15 ARG A 340 HIS A 345 1 6 HELIX 16 16 TYR A 366 ASP A 368 5 3 HELIX 17 17 LYS A 369 ILE A 377 1 9 HELIX 18 18 VAL B 31 LEU B 40 1 10 HELIX 19 19 SER B 52 ASN B 58 5 7 HELIX 20 20 ASP B 63 GLY B 80 1 18 HELIX 21 21 PRO B 99 GLY B 118 1 20 HELIX 22 22 TYR B 132 GLU B 153 1 22 HELIX 23 23 SER B 185 ASN B 199 1 15 HELIX 24 24 ASP B 211 ASN B 225 1 15 HELIX 25 25 LEU B 227 LYS B 234 1 8 HELIX 26 26 SER B 236 LYS B 249 1 14 HELIX 27 27 ASP B 266 SER B 280 1 15 HELIX 28 28 ARG B 281 SER B 283 5 3 HELIX 29 29 LEU B 288 ALA B 299 1 12 HELIX 30 30 ASP B 300 GLU B 315 1 16 HELIX 31 31 LEU B 326 LYS B 331 1 6 HELIX 32 32 LEU B 342 GLY B 346 5 5 HELIX 33 33 TYR B 366 ASP B 368 5 3 HELIX 34 34 LYS B 369 ILE B 377 1 9 SHEET 1 A 6 TYR A 85 ALA A 88 0 SHEET 2 A 6 LYS A 44 GLY A 50 1 N LEU A 49 O ALA A 88 SHEET 3 A 6 ALA A 2 ILE A 9 1 N SER A 7 O ILE A 48 SHEET 4 A 6 ILE A 119 HIS A 128 1 O ASP A 125 N PHE A 6 SHEET 5 A 6 VAL A 156 ASN A 162 1 O TYR A 161 N ILE A 124 SHEET 6 A 6 HIS A 177 ILE A 184 -1 O ILE A 179 N LEU A 160 SHEET 1 B 3 GLU A 25 SER A 29 0 SHEET 2 B 3 VAL A 18 ILE A 22 -1 N VAL A 18 O SER A 29 SHEET 3 B 3 THR A 173 LYS A 175 1 O VAL A 174 N THR A 19 SHEET 1 C 3 PHE A 95 LYS A 96 0 SHEET 2 C 3 ILE A 260 VAL A 263 1 O VAL A 262 N LYS A 96 SHEET 3 C 3 LEU A 252 PRO A 255 -1 N LEU A 252 O VAL A 263 SHEET 1 D 4 VAL A 286 ASP A 287 0 SHEET 2 D 4 LYS A 361 THR A 365 -1 O VAL A 364 N VAL A 286 SHEET 3 D 4 TYR A 354 GLU A 358 -1 N TYR A 356 O TYR A 363 SHEET 4 D 4 LYS A 324 LEU A 325 -1 N LYS A 324 O VAL A 355 SHEET 1 E 8 GLU B 25 SER B 29 0 SHEET 2 E 8 VAL B 18 ILE B 22 -1 N TYR B 20 O PHE B 27 SHEET 3 E 8 THR B 173 ILE B 184 1 O VAL B 174 N THR B 19 SHEET 4 E 8 VAL B 156 SER B 163 -1 N LEU B 160 O ILE B 179 SHEET 5 E 8 ILE B 119 HIS B 128 1 N ILE B 124 O TYR B 161 SHEET 6 E 8 ALA B 2 ILE B 9 1 N PHE B 6 O ASP B 125 SHEET 7 E 8 LYS B 44 GLY B 50 1 O ILE B 48 N SER B 7 SHEET 8 E 8 TYR B 85 ALA B 88 1 O VAL B 86 N VAL B 47 SHEET 1 F 3 PHE B 95 LYS B 96 0 SHEET 2 F 3 ILE B 260 VAL B 263 1 O ILE B 260 N LYS B 96 SHEET 3 F 3 LEU B 252 PRO B 255 -1 N THR B 254 O ASN B 261 SHEET 1 G 4 VAL B 286 ASP B 287 0 SHEET 2 G 4 LYS B 361 THR B 365 -1 O VAL B 364 N VAL B 286 SHEET 3 G 4 TYR B 354 GLU B 358 -1 N TYR B 356 O TYR B 363 SHEET 4 G 4 LYS B 324 LEU B 325 -1 N LYS B 324 O VAL B 355 SSBOND 1 CYS A 59 CYS A 70 1555 1555 2.09 SSBOND 2 CYS B 59 CYS B 70 1555 1555 2.05 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C TYR A 132 N MSE A 133 1555 1555 1.34 LINK C MSE A 133 N GLY A 134 1555 1555 1.33 LINK C ASP A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.33 LINK C GLN A 318 N MSE A 319 1555 1555 1.32 LINK C MSE A 319 N GLY A 320 1555 1555 1.34 LINK C TYR A 329 N MSE A 330 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N ALA B 2 1555 1555 1.32 LINK C TYR B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N GLY B 134 1555 1555 1.34 LINK C ASP B 266 N MSE B 267 1555 1555 1.35 LINK C MSE B 267 N LYS B 268 1555 1555 1.34 LINK C GLN B 318 N MSE B 319 1555 1555 1.33 LINK C MSE B 319 N GLY B 320 1555 1555 1.33 LINK C TYR B 329 N MSE B 330 1555 1555 1.33 LINK C MSE B 330 N LYS B 331 1555 1555 1.33 LINK NZ LYS A 68 MG MG A 402 1555 1555 2.88 LINK N VAL A 87 MG MG A 402 1555 1555 3.08 LINK OH TYR A 105 MG MG A 402 1555 1555 2.93 LINK OH TYR B 105 MG MG B 401 1555 1555 2.93 CISPEP 1 GLU A 83 SER A 84 0 1.03 CISPEP 2 GLU B 83 SER B 84 0 -1.35 SITE 1 AC1 4 LYS B 68 VAL B 86 VAL B 87 TYR B 105 SITE 1 AC2 4 LYS A 68 VAL A 86 VAL A 87 TYR A 105 CRYST1 78.849 84.918 108.513 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009215 0.00000