HEADER OXIDOREDUCTASE 30-AUG-06 2I7F TITLE SPHINGOMONAS YANOIKUYAE B1 FERREDOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN COMPONENT OF DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM YANOIKUYAE; SOURCE 3 ORGANISM_TAXID: 13690; SOURCE 4 STRAIN: B1; SOURCE 5 GENE: AHDA3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS RIESKE FERREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAMASWAMY,E.N.BROWN REVDAT 5 30-AUG-23 2I7F 1 REMARK LINK REVDAT 4 18-OCT-17 2I7F 1 REMARK REVDAT 3 24-FEB-09 2I7F 1 VERSN REVDAT 2 27-MAR-07 2I7F 1 JRNL REVDAT 1 20-MAR-07 2I7F 0 JRNL AUTH D.J.FERRARO,E.N.BROWN,C.L.YU,R.E.PARALES,D.T.GIBSON, JRNL AUTH 2 S.RAMASWAMY JRNL TITL STRUCTURAL INVESTIGATIONS OF THE FERREDOXIN AND TERMINAL JRNL TITL 2 OXYGENASE COMPONENTS OF THE BIPHENYL 2,3-DIOXYGENASE FROM JRNL TITL 3 SPHINGOBIUM YANOIKUYAE B1. JRNL REF BMC STRUCT.BIOL. V. 7 10 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17349044 JRNL DOI 10.1186/1472-6807-7-10 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 20863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1059 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.63000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1620 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1021 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2212 ; 1.935 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2527 ; 0.972 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;31.690 ;26.232 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;14.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 4.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 245 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1813 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 287 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 291 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1020 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 752 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 803 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.005 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.346 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.354 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1283 ; 1.061 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 411 ; 0.233 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1650 ; 1.314 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 693 ; 2.464 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 557 ; 3.357 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 B 562 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1516 38.4367 35.1720 REMARK 3 T TENSOR REMARK 3 T11: -0.0521 T22: -0.0279 REMARK 3 T33: -0.0762 T12: 0.0243 REMARK 3 T13: -0.0026 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.2103 L22: 3.3751 REMARK 3 L33: 1.5668 L12: 0.9417 REMARK 3 L13: -0.1870 L23: 0.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.0119 S13: 0.0074 REMARK 3 S21: -0.0032 S22: 0.0070 S23: 0.0175 REMARK 3 S31: -0.0047 S32: -0.0132 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 562 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6252 12.6873 25.2972 REMARK 3 T TENSOR REMARK 3 T11: -0.0658 T22: -0.0263 REMARK 3 T33: -0.0689 T12: -0.0076 REMARK 3 T13: -0.0239 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8942 L22: 2.6226 REMARK 3 L33: 1.3436 L12: -0.2196 REMARK 3 L13: 0.0237 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0175 S13: -0.0039 REMARK 3 S21: 0.0063 S22: 0.0465 S23: 0.0893 REMARK 3 S31: -0.0515 S32: -0.1432 S33: -0.0356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.1L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25261 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.4 REMARK 200 DATA REDUNDANCY : 4.740 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 7.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.24 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1FQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M PHOSPHATE BUFFER, 0.1M CITRIC REMARK 280 ACID, 1.6M AMMONIUM SULFATE, PH 6.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 158.95733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.47867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.21800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.73933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 198.69667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 158.95733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 79.47867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.73933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.21800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 198.69667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 570 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 105 REMARK 465 GLU A 106 REMARK 465 SER A 107 REMARK 465 ALA A 108 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 105 REMARK 465 GLU B 106 REMARK 465 SER B 107 REMARK 465 ALA B 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 CIT A 503 O HOH A 564 1.97 REMARK 500 O GLU B 24 O HOH B 574 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH B 609 6654 1.73 REMARK 500 O HOH A 571 O HOH B 609 6654 2.02 REMARK 500 O HOH A 566 O HOH B 609 6654 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -7.97 72.22 REMARK 500 LYS A 79 -79.19 -110.60 REMARK 500 GLN A 84 -31.77 -131.82 REMARK 500 ALA B 28 131.64 -37.87 REMARK 500 HIS B 67 -6.15 63.87 REMARK 500 LYS B 79 -89.18 -112.51 REMARK 500 GLN B 84 -49.68 -137.34 REMARK 500 ASP B 96 52.29 36.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 FES A 501 S1 109.9 REMARK 620 3 FES A 501 S2 109.8 101.8 REMARK 620 4 CYS A 64 SG 110.5 114.7 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 FES A 501 S1 110.8 REMARK 620 3 FES A 501 S2 113.0 104.1 REMARK 620 4 HIS A 67 ND1 96.7 118.1 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 45 SG REMARK 620 2 FES B 502 S1 112.5 REMARK 620 3 FES B 502 S2 110.3 103.8 REMARK 620 4 CYS B 64 SG 107.8 112.7 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 ND1 REMARK 620 2 FES B 502 S1 111.3 REMARK 620 3 FES B 502 S2 115.4 104.6 REMARK 620 4 HIS B 67 ND1 96.9 117.1 112.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FQT RELATED DB: PDB REMARK 900 RIESKE DIOXYGENASE FERREDOXIN REMARK 900 RELATED ID: 1VCK RELATED DB: PDB REMARK 900 RIESKE DIOXYGENASE FERREDOXIN REMARK 900 RELATED ID: 1SJG RELATED DB: PDB REMARK 900 RIESKE DIOXYGENASE FERREDOXIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS NOT AVAILABLE IN UNIPROT REMARK 999 DATABASE AT THE TIME OF PROCESSING DBREF 2I7F A 1 108 UNP A2TC31 A2TC31_SPHYA 1 108 DBREF 2I7F B 1 108 UNP A2TC31 A2TC31_SPHYA 1 108 SEQRES 1 A 108 MET SER ASN LYS LEU ARG LEU CYS GLN VAL ALA SER VAL SEQRES 2 A 108 LYS ASP GLY GLU PRO VAL ALA VAL TYR GLN GLU LYS MET SEQRES 3 A 108 PRO ALA LEU ALA VAL TYR ASN VAL ASP GLY GLU VAL PHE SEQRES 4 A 108 VAL THR ASP ASN LEU CYS THR HIS GLY ASN ALA MET LEU SEQRES 5 A 108 THR ASP GLY TYR GLN ASP GLY THR ILE ILE GLU CYS PRO SEQRES 6 A 108 PHE HIS GLY GLY SER PHE ASP ILE ALA THR GLY ALA ALA SEQRES 7 A 108 LYS ALA PHE PRO CYS GLN ILE PRO ILE LYS THR TYR PRO SEQRES 8 A 108 VAL THR ILE GLU ASP GLY TRP VAL CYS ILE ASP GLN PRO SEQRES 9 A 108 LYS GLU SER ALA SEQRES 1 B 108 MET SER ASN LYS LEU ARG LEU CYS GLN VAL ALA SER VAL SEQRES 2 B 108 LYS ASP GLY GLU PRO VAL ALA VAL TYR GLN GLU LYS MET SEQRES 3 B 108 PRO ALA LEU ALA VAL TYR ASN VAL ASP GLY GLU VAL PHE SEQRES 4 B 108 VAL THR ASP ASN LEU CYS THR HIS GLY ASN ALA MET LEU SEQRES 5 B 108 THR ASP GLY TYR GLN ASP GLY THR ILE ILE GLU CYS PRO SEQRES 6 B 108 PHE HIS GLY GLY SER PHE ASP ILE ALA THR GLY ALA ALA SEQRES 7 B 108 LYS ALA PHE PRO CYS GLN ILE PRO ILE LYS THR TYR PRO SEQRES 8 B 108 VAL THR ILE GLU ASP GLY TRP VAL CYS ILE ASP GLN PRO SEQRES 9 B 108 LYS GLU SER ALA HET SO4 A 500 5 HET FES A 501 4 HET CIT A 503 13 HET FES B 502 4 HET CIT B 504 13 HETNAM SO4 SULFATE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM CIT CITRIC ACID FORMUL 3 SO4 O4 S 2- FORMUL 4 FES 2(FE2 S2) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 8 HOH *193(H2 O) HELIX 1 1 ALA A 11 VAL A 13 5 3 HELIX 2 2 MET A 51 GLY A 55 5 5 HELIX 3 3 ALA B 11 VAL B 13 5 3 HELIX 4 4 MET B 51 GLY B 55 5 5 SHEET 1 A 3 LYS A 4 GLN A 9 0 SHEET 2 A 3 TRP A 98 ASP A 102 -1 O VAL A 99 N LEU A 7 SHEET 3 A 3 VAL A 92 GLU A 95 -1 N THR A 93 O CYS A 100 SHEET 1 B 4 VAL A 19 VAL A 21 0 SHEET 2 B 4 LEU A 29 VAL A 34 -1 O VAL A 31 N VAL A 19 SHEET 3 B 4 GLU A 37 ASP A 42 -1 O THR A 41 N ALA A 30 SHEET 4 B 4 THR A 89 TYR A 90 -1 O TYR A 90 N VAL A 40 SHEET 1 C 3 TYR A 56 ASP A 58 0 SHEET 2 C 3 ILE A 61 GLU A 63 -1 O ILE A 61 N ASP A 58 SHEET 3 C 3 SER A 70 ASP A 72 -1 O PHE A 71 N ILE A 62 SHEET 1 D 3 LEU B 5 GLN B 9 0 SHEET 2 D 3 TRP B 98 ILE B 101 -1 O VAL B 99 N CYS B 8 SHEET 3 D 3 THR B 93 GLU B 95 -1 N THR B 93 O CYS B 100 SHEET 1 E 4 VAL B 19 VAL B 21 0 SHEET 2 E 4 LEU B 29 VAL B 34 -1 O LEU B 29 N VAL B 21 SHEET 3 E 4 GLU B 37 ASP B 42 -1 O GLU B 37 N VAL B 34 SHEET 4 E 4 THR B 89 TYR B 90 -1 O TYR B 90 N VAL B 40 SHEET 1 F 3 TYR B 56 ASP B 58 0 SHEET 2 F 3 ILE B 61 GLU B 63 -1 O ILE B 61 N ASP B 58 SHEET 3 F 3 SER B 70 ASP B 72 -1 O PHE B 71 N ILE B 62 LINK SG CYS A 45 FE2 FES A 501 1555 1555 2.32 LINK ND1 HIS A 47 FE1 FES A 501 1555 1555 2.23 LINK SG CYS A 64 FE2 FES A 501 1555 1555 2.24 LINK ND1 HIS A 67 FE1 FES A 501 1555 1555 2.13 LINK SG CYS B 45 FE2 FES B 502 1555 1555 2.29 LINK ND1 HIS B 47 FE1 FES B 502 1555 1555 2.16 LINK SG CYS B 64 FE2 FES B 502 1555 1555 2.30 LINK ND1 HIS B 67 FE1 FES B 502 1555 1555 2.00 CISPEP 1 PHE A 81 PRO A 82 0 8.55 CISPEP 2 PHE B 81 PRO B 82 0 5.12 SITE 1 AC1 5 CYS A 8 GLN A 9 SER A 12 TRP A 98 SITE 2 AC1 5 HOH A 550 SITE 1 AC2 7 CYS A 45 HIS A 47 GLY A 48 CYS A 64 SITE 2 AC2 7 PHE A 66 HIS A 67 CYS A 83 SITE 1 AC3 7 CYS B 45 HIS B 47 GLY B 48 CYS B 64 SITE 2 AC3 7 PHE B 66 HIS B 67 CYS B 83 SITE 1 AC4 6 ASN A 49 HOH A 515 HOH A 523 HOH A 563 SITE 2 AC4 6 HOH A 564 HOH A 579 SITE 1 AC5 8 ALA A 77 ALA A 78 GLN A 84 PRO A 86 SITE 2 AC5 8 THR B 89 PRO B 91 HOH B 515 HOH B 546 CRYST1 62.064 62.064 238.436 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016112 0.009302 0.000000 0.00000 SCALE2 0.000000 0.018605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004194 0.00000