HEADER VIRAL PROTEIN 01-SEP-06 2I8B TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA VIRUS VP30 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR NUCLEOPROTEIN VP30; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 142-272; COMPND 5 SYNONYM: TRANSCRIPTION ACTIVATOR VP30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS; SOURCE 3 ORGANISM_TAXID: 186538; SOURCE 4 GENE: VP30; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON +; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS VP30 EBOLA VIRUS PROTEIN, TRANSCRIPTION, RNA BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.MUZIOL,B.HARTLIEB,S.BECKER,W.WEISSENHORN REVDAT 5 09-OCT-24 2I8B 1 SEQADV LINK REVDAT 4 18-OCT-17 2I8B 1 REMARK REVDAT 3 13-JUL-11 2I8B 1 VERSN REVDAT 2 24-FEB-09 2I8B 1 VERSN REVDAT 1 23-JAN-07 2I8B 0 JRNL AUTH B.HARTLIEB,T.MUZIOL,W.WEISSENHORN,S.BECKER JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA VIRUS JRNL TITL 2 VP30 REVEALS A ROLE IN TRANSCRIPTION AND NUCLEOCAPSID JRNL TITL 3 ASSOCIATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 624 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17202263 JRNL DOI 10.1073/PNAS.0606730104 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1451 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98000 REMARK 3 B22 (A**2) : -3.03000 REMARK 3 B33 (A**2) : 5.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2121 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2880 ; 1.141 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 4.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;36.937 ;23.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;15.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.447 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1553 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 979 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1518 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1343 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 1.263 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 1.902 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 762 ; 3.113 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 142 A 157 6 REMARK 3 1 B 142 B 157 6 REMARK 3 2 A 163 A 181 6 REMARK 3 2 B 163 B 181 6 REMARK 3 3 A 182 A 195 6 REMARK 3 3 B 182 B 195 6 REMARK 3 4 A 203 A 216 6 REMARK 3 4 B 203 B 216 6 REMARK 3 5 A 219 A 248 6 REMARK 3 5 B 219 B 248 6 REMARK 3 6 A 254 A 262 6 REMARK 3 6 B 254 B 262 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 807 ; 0.51 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 807 ; 2.72 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2700 32.7300 4.6760 REMARK 3 T TENSOR REMARK 3 T11: -0.0116 T22: -0.0260 REMARK 3 T33: -0.0418 T12: -0.0059 REMARK 3 T13: 0.0339 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.0415 L22: 0.9835 REMARK 3 L33: 0.3099 L12: -0.5261 REMARK 3 L13: 0.6424 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0750 S13: 0.0641 REMARK 3 S21: 0.0017 S22: -0.0334 S23: 0.1600 REMARK 3 S31: 0.0137 S32: 0.0077 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 135 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3190 29.7690 5.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.0043 REMARK 3 T33: -0.0622 T12: -0.0052 REMARK 3 T13: -0.0348 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.9733 L22: 0.6695 REMARK 3 L33: 0.1135 L12: -0.1571 REMARK 3 L13: -0.2425 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0785 S13: 0.1639 REMARK 3 S21: 0.0043 S22: 0.0031 S23: -0.0488 REMARK 3 S31: 0.0529 S32: 0.0513 S33: -0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630, 0.97950 REMARK 200 MONOCHROMATOR : SI CHANNEL CUT CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 225 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM ACETATE, 15MM MAGNESIUM REMARK 280 ACETATE TETRAHYDRATE, 0.05M SODIUM CACODYLATE, 10%(V/V) REMARK 280 ISOPROPANOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 ASP A 127 REMARK 465 TYR A 128 REMARK 465 ASP A 129 REMARK 465 ILE A 130 REMARK 465 PRO A 131 REMARK 465 THR A 132 REMARK 465 THR A 133 REMARK 465 GLU A 134 REMARK 465 ASN A 135 REMARK 465 LEU A 136 REMARK 465 TYR A 137 REMARK 465 PHE A 138 REMARK 465 GLN A 139 REMARK 465 GLN A 267 REMARK 465 SER A 268 REMARK 465 ASP A 269 REMARK 465 ASN A 270 REMARK 465 GLU A 271 REMARK 465 GLU A 272 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 ASP B 127 REMARK 465 TYR B 128 REMARK 465 ASP B 129 REMARK 465 ILE B 130 REMARK 465 PRO B 131 REMARK 465 THR B 132 REMARK 465 THR B 133 REMARK 465 GLU B 134 REMARK 465 GLN B 267 REMARK 465 SER B 268 REMARK 465 ASP B 269 REMARK 465 ASN B 270 REMARK 465 GLU B 271 REMARK 465 GLU B 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 218 -87.83 -79.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 2I8B A 142 272 UNP Q05323 VP30_EBOZM 142 272 DBREF 2I8B B 142 272 UNP Q05323 VP30_EBOZM 142 272 SEQADV 2I8B HIS A 121 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS A 122 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS A 123 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS A 124 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS A 125 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS A 126 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASP A 127 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B TYR A 128 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASP A 129 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ILE A 130 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B PRO A 131 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B THR A 132 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B THR A 133 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLU A 134 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASN A 135 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B LEU A 136 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B TYR A 137 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B PHE A 138 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLN A 139 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLY A 140 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ALA A 141 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B MSE A 177 UNP Q05323 MET 177 MODIFIED RESIDUE SEQADV 2I8B MSE A 237 UNP Q05323 MET 237 MODIFIED RESIDUE SEQADV 2I8B HIS B 121 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS B 122 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS B 123 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS B 124 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS B 125 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B HIS B 126 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASP B 127 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B TYR B 128 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASP B 129 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ILE B 130 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B PRO B 131 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B THR B 132 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B THR B 133 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLU B 134 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ASN B 135 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B LEU B 136 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B TYR B 137 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B PHE B 138 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLN B 139 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B GLY B 140 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B ALA B 141 UNP Q05323 CLONING ARTIFACT SEQADV 2I8B MSE B 177 UNP Q05323 MET 177 MODIFIED RESIDUE SEQADV 2I8B MSE B 237 UNP Q05323 MET 237 MODIFIED RESIDUE SEQRES 1 A 152 HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO THR THR SEQRES 2 A 152 GLU ASN LEU TYR PHE GLN GLY ALA ILE THR LEU LEU THR SEQRES 3 A 152 LEU ILE LYS THR ALA GLU HIS TRP ALA ARG GLN ASP ILE SEQRES 4 A 152 ARG THR ILE GLU ASP SER LYS LEU ARG ALA LEU LEU THR SEQRES 5 A 152 LEU CYS ALA VAL MSE THR ARG LYS PHE SER LYS SER GLN SEQRES 6 A 152 LEU SER LEU LEU CYS GLU THR HIS LEU ARG ARG GLU GLY SEQRES 7 A 152 LEU GLY GLN ASP GLN ALA GLU PRO VAL LEU GLU VAL TYR SEQRES 8 A 152 GLN ARG LEU HIS SER ASP LYS GLY GLY SER PHE GLU ALA SEQRES 9 A 152 ALA LEU TRP GLN GLN TRP ASP ARG GLN SER LEU ILE MSE SEQRES 10 A 152 PHE ILE THR ALA PHE LEU ASN ILE ALA LEU GLN LEU PRO SEQRES 11 A 152 CYS GLU SER SER ALA VAL VAL VAL SER GLY LEU ARG THR SEQRES 12 A 152 LEU VAL PRO GLN SER ASP ASN GLU GLU SEQRES 1 B 152 HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO THR THR SEQRES 2 B 152 GLU ASN LEU TYR PHE GLN GLY ALA ILE THR LEU LEU THR SEQRES 3 B 152 LEU ILE LYS THR ALA GLU HIS TRP ALA ARG GLN ASP ILE SEQRES 4 B 152 ARG THR ILE GLU ASP SER LYS LEU ARG ALA LEU LEU THR SEQRES 5 B 152 LEU CYS ALA VAL MSE THR ARG LYS PHE SER LYS SER GLN SEQRES 6 B 152 LEU SER LEU LEU CYS GLU THR HIS LEU ARG ARG GLU GLY SEQRES 7 B 152 LEU GLY GLN ASP GLN ALA GLU PRO VAL LEU GLU VAL TYR SEQRES 8 B 152 GLN ARG LEU HIS SER ASP LYS GLY GLY SER PHE GLU ALA SEQRES 9 B 152 ALA LEU TRP GLN GLN TRP ASP ARG GLN SER LEU ILE MSE SEQRES 10 B 152 PHE ILE THR ALA PHE LEU ASN ILE ALA LEU GLN LEU PRO SEQRES 11 B 152 CYS GLU SER SER ALA VAL VAL VAL SER GLY LEU ARG THR SEQRES 12 B 152 LEU VAL PRO GLN SER ASP ASN GLU GLU MODRES 2I8B MSE A 177 MET SELENOMETHIONINE MODRES 2I8B MSE A 237 MET SELENOMETHIONINE MODRES 2I8B MSE B 177 MET SELENOMETHIONINE MODRES 2I8B MSE B 237 MET SELENOMETHIONINE HET MSE A 177 8 HET MSE A 237 13 HET MSE B 177 8 HET MSE B 237 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *174(H2 O) HELIX 1 1 LEU A 144 ARG A 156 1 13 HELIX 2 2 GLU A 163 PHE A 181 1 19 HELIX 3 3 SER A 182 ARG A 195 1 14 HELIX 4 4 GLY A 200 ASP A 202 5 3 HELIX 5 5 GLN A 203 SER A 216 1 14 HELIX 6 6 GLY A 220 TRP A 230 1 11 HELIX 7 7 ASP A 231 GLN A 248 1 18 HELIX 8 8 SER A 254 THR A 263 1 10 HELIX 9 9 LEU B 144 ARG B 156 1 13 HELIX 10 10 GLU B 163 PHE B 181 1 19 HELIX 11 11 SER B 182 GLY B 198 1 17 HELIX 12 12 GLY B 200 SER B 216 1 17 HELIX 13 13 GLY B 220 TRP B 230 1 11 HELIX 14 14 ASP B 231 GLN B 248 1 18 HELIX 15 15 SER B 254 THR B 263 1 10 SHEET 1 A 2 ILE A 142 THR A 143 0 SHEET 2 A 2 PRO B 250 GLU B 252 -1 O CYS B 251 N ILE A 142 SHEET 1 B 2 PRO A 250 GLU A 252 0 SHEET 2 B 2 ILE B 142 THR B 143 -1 O ILE B 142 N CYS A 251 LINK C VAL A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N THR A 178 1555 1555 1.34 LINK C ILE A 236 N MSE A 237 1555 1555 1.34 LINK C MSE A 237 N PHE A 238 1555 1555 1.34 LINK C VAL B 176 N MSE B 177 1555 1555 1.33 LINK C MSE B 177 N THR B 178 1555 1555 1.34 LINK C ILE B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N PHE B 238 1555 1555 1.33 CRYST1 58.370 63.590 80.430 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012433 0.00000