HEADER STRUCTURAL GENOMICS/UNKNOWN FUNCTION 01-SEP-06 2I8D TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN OF COG5646 TITLE 2 (ZP_00384875.1) FROM LACTOBACILLUS CASEI ATCC 334 AT 1.69 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED CONSERVED PROTEIN OF COG5646; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 1582; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ZP_00384875.1, UNCHARACTERIZED CONSERVED PROTEIN OF COG5646, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, JOINT KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, JCSG, STRUCTURAL GENOMICS-UNKNOWN KEYWDS 4 FUNCTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2I8D 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2I8D 1 REMARK REVDAT 4 18-OCT-17 2I8D 1 REMARK REVDAT 3 13-JUL-11 2I8D 1 VERSN REVDAT 2 24-FEB-09 2I8D 1 VERSN REVDAT 1 19-SEP-06 2I8D 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN OF JRNL TITL 2 COG5646 (ZP_00384875.1) FROM LACTOBACILLUS CASEI ATCC 334 AT JRNL TITL 3 1.69 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2380 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2164 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2953 ; 1.365 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3638 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 5.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.161 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;13.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2402 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 429 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1555 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1025 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1055 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 2.074 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 482 ; 0.517 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2050 ; 2.579 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 3.853 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 5.270 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2090 32.7340 0.8020 REMARK 3 T TENSOR REMARK 3 T11: -0.0820 T22: -0.1164 REMARK 3 T33: -0.0212 T12: -0.0128 REMARK 3 T13: -0.0113 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.7114 L22: 0.9968 REMARK 3 L33: 1.1608 L12: 0.0374 REMARK 3 L13: -0.5805 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: -0.1132 S13: 0.1189 REMARK 3 S21: -0.0342 S22: 0.0799 S23: -0.0773 REMARK 3 S31: -0.1562 S32: 0.1304 S33: -0.1416 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0110 30.0130 8.6540 REMARK 3 T TENSOR REMARK 3 T11: -0.0857 T22: -0.1111 REMARK 3 T33: -0.0344 T12: 0.0017 REMARK 3 T13: -0.0117 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3683 L22: 0.9689 REMARK 3 L33: 1.6176 L12: 0.0115 REMARK 3 L13: -0.5660 L23: 0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: -0.0351 S13: 0.0792 REMARK 3 S21: 0.0744 S22: 0.0381 S23: 0.0076 REMARK 3 S31: -0.0452 S32: 0.0413 S33: -0.1037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. UNKNOWN LIGAND MODELED NEAR A85. REMARK 3 5. UNMODELED DENSITY NEAR B37. REMARK 3 6. CHLORINE AND GLYCEROL MODELED BASED ON CRYSTALLIZATION REMARK 3 CONDITIONS. REMARK 4 REMARK 4 2I8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94926,0.97925 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34612 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.775 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : 0.66200 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LICL, 20.0% PEG-6000, 0.1M REMARK 280 CITRATE, PH 4.0, VAPOR DIFFUSION, SITTING DROP, OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.97300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.43600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.63800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.43600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.97300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.63800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 ASSIGNMENT OF A DIMER AS THE BIOLOGICALLY RELEVENT REMARK 300 OLIGOMERIZATION STATE IS SUPPORTED BY SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY AND STATIC LIGHT SCATTERING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 9 OE1 NE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 95 CE NZ REMARK 470 LYS B 35 CE NZ REMARK 470 LYS B 59 CE NZ REMARK 470 LYS B 60 CE NZ REMARK 470 LYS B 80 CD CE NZ REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 114 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 73 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 73 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 10 O HOH B 218 2.15 REMARK 500 O HOH A 350 O HOH B 168 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 49.37 39.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 368040 RELATED DB: TARGETDB DBREF 2I8D A 1 122 GB 62513320 ZP_00384875 1 122 DBREF 2I8D B 1 122 GB 62513320 ZP_00384875 1 122 SEQADV 2I8D GLY A 0 GB 62513320 EXPRESSION TAG SEQADV 2I8D MSE A 1 GB 62513320 MET 1 MODIFIED RESIDUE SEQADV 2I8D MSE A 27 GB 62513320 MET 27 MODIFIED RESIDUE SEQADV 2I8D MSE A 44 GB 62513320 MET 44 MODIFIED RESIDUE SEQADV 2I8D MSE A 53 GB 62513320 MET 53 MODIFIED RESIDUE SEQADV 2I8D MSE A 71 GB 62513320 MET 71 MODIFIED RESIDUE SEQADV 2I8D GLY B 0 GB 62513320 EXPRESSION TAG SEQADV 2I8D MSE B 1 GB 62513320 MET 1 MODIFIED RESIDUE SEQADV 2I8D MSE B 27 GB 62513320 MET 27 MODIFIED RESIDUE SEQADV 2I8D MSE B 44 GB 62513320 MET 44 MODIFIED RESIDUE SEQADV 2I8D MSE B 53 GB 62513320 MET 53 MODIFIED RESIDUE SEQADV 2I8D MSE B 71 GB 62513320 MET 71 MODIFIED RESIDUE SEQRES 1 A 123 GLY MSE GLY SER LEU ALA GLU TRP TYR GLN ARG ILE PRO SEQRES 2 A 123 THR PRO ASP ASP LEU THR ARG VAL GLU SER LEU PHE ALA SEQRES 3 A 123 ASN MSE GLN ALA GLN PHE PRO GLN LEU LYS LEU GLU PHE SEQRES 4 A 123 LYS TRP ASN GLN PRO MSE PHE THR ASP HIS GLY THR PHE SEQRES 5 A 123 ILE MSE GLY PHE ASN PRO SER LYS LYS HIS LEU ALA VAL SEQRES 6 A 123 ALA ILE GLU PRO GLN THR MSE THR ARG PHE ILE PRO GLN SEQRES 7 A 123 ILE ASP LYS ALA GLY TYR ASP HIS SER GLN ILE ILE ARG SEQRES 8 A 123 PHE PRO TRP HIS LYS PRO LEU ASP GLU GLN LEU ILE HIS SEQRES 9 A 123 ASP LEU ILE ALA TYR THR ILE ASP GLN LYS LYS ASP ALA SEQRES 10 A 123 THR THR PHE TRP GLN ARG SEQRES 1 B 123 GLY MSE GLY SER LEU ALA GLU TRP TYR GLN ARG ILE PRO SEQRES 2 B 123 THR PRO ASP ASP LEU THR ARG VAL GLU SER LEU PHE ALA SEQRES 3 B 123 ASN MSE GLN ALA GLN PHE PRO GLN LEU LYS LEU GLU PHE SEQRES 4 B 123 LYS TRP ASN GLN PRO MSE PHE THR ASP HIS GLY THR PHE SEQRES 5 B 123 ILE MSE GLY PHE ASN PRO SER LYS LYS HIS LEU ALA VAL SEQRES 6 B 123 ALA ILE GLU PRO GLN THR MSE THR ARG PHE ILE PRO GLN SEQRES 7 B 123 ILE ASP LYS ALA GLY TYR ASP HIS SER GLN ILE ILE ARG SEQRES 8 B 123 PHE PRO TRP HIS LYS PRO LEU ASP GLU GLN LEU ILE HIS SEQRES 9 B 123 ASP LEU ILE ALA TYR THR ILE ASP GLN LYS LYS ASP ALA SEQRES 10 B 123 THR THR PHE TRP GLN ARG MODRES 2I8D MSE A 27 MET SELENOMETHIONINE MODRES 2I8D MSE A 44 MET SELENOMETHIONINE MODRES 2I8D MSE A 53 MET SELENOMETHIONINE MODRES 2I8D MSE A 71 MET SELENOMETHIONINE MODRES 2I8D MSE B 27 MET SELENOMETHIONINE MODRES 2I8D MSE B 44 MET SELENOMETHIONINE MODRES 2I8D MSE B 53 MET SELENOMETHIONINE MODRES 2I8D MSE B 71 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 44 13 HET MSE A 53 8 HET MSE A 71 8 HET MSE B 27 8 HET MSE B 44 13 HET MSE B 53 8 HET MSE B 71 8 HET CL A 123 1 HET UNL A 200 10 HET GOL A 201 6 HET CL B 123 1 HET CL B 124 1 HET GOL B 125 6 HET GOL B 126 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *307(H2 O) HELIX 1 1 SER A 3 GLN A 9 1 7 HELIX 2 2 THR A 13 PHE A 31 1 19 HELIX 3 3 GLU A 67 GLY A 82 1 16 HELIX 4 4 ASP A 98 LYS A 113 1 16 HELIX 5 5 SER B 3 ARG B 10 1 8 HELIX 6 6 THR B 13 PHE B 31 1 19 HELIX 7 7 GLU B 67 GLY B 82 1 16 HELIX 8 8 ASP B 98 LYS B 114 1 17 SHEET 1 A10 LYS A 35 LYS A 39 0 SHEET 2 A10 GLN A 42 ASP A 47 -1 O MSE A 44 N GLU A 37 SHEET 3 A10 THR A 50 PRO A 57 -1 O ILE A 52 N PHE A 45 SHEET 4 A10 HIS A 61 ILE A 66 -1 O ALA A 63 N ASN A 56 SHEET 5 A10 HIS B 85 PRO B 92 -1 O GLN B 87 N ILE A 66 SHEET 6 A10 HIS A 85 PRO A 92 -1 N SER A 86 O ILE B 88 SHEET 7 A10 HIS B 61 ALA B 65 -1 O LEU B 62 N PHE A 91 SHEET 8 A10 THR B 50 PRO B 57 -1 N ASN B 56 O ALA B 63 SHEET 9 A10 GLN B 42 ASP B 47 -1 N PHE B 45 O MSE B 53 SHEET 10 A10 LYS B 35 LYS B 39 -1 N GLU B 37 O MSE B 44 LINK C ASN A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N GLN A 28 1555 1555 1.33 LINK C PRO A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N PHE A 45 1555 1555 1.33 LINK C ILE A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N GLY A 54 1555 1555 1.34 LINK C THR A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N THR A 72 1555 1555 1.31 LINK C ASN B 26 N MSE B 27 1555 1555 1.33 LINK C MSE B 27 N GLN B 28 1555 1555 1.33 LINK C PRO B 43 N MSE B 44 1555 1555 1.32 LINK C MSE B 44 N PHE B 45 1555 1555 1.32 LINK C ILE B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLY B 54 1555 1555 1.33 LINK C THR B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N THR B 72 1555 1555 1.33 SITE 1 AC1 3 PHE B 119 TRP B 120 ARG B 122 SITE 1 AC2 4 THR A 118 PHE A 119 TRP A 120 ARG A 122 SITE 1 AC3 1 ARG B 73 SITE 1 AC4 9 ALA A 65 ARG A 90 HOH A 204 HOH A 208 SITE 2 AC4 9 ASP B 84 HIS B 85 SER B 86 ARG B 122 SITE 3 AC4 9 HOH B 132 SITE 1 AC5 5 ASP A 84 HIS A 85 TRP A 120 HOH A 203 SITE 2 AC5 5 GOL B 126 SITE 1 AC6 2 LYS B 39 TRP B 40 SITE 1 AC7 9 HIS A 85 SER A 86 TRP A 120 GOL A 201 SITE 2 AC7 9 GLN B 42 ALA B 65 ARG B 90 HOH B 129 SITE 3 AC7 9 HOH B 283 CRYST1 47.946 69.276 90.872 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011010 0.00000