HEADER ELECTRON TRANSPORT 01-SEP-06 2I8F TITLE SOLUTION CONFORMATION OF THE H47A MUTANT OF PSEUDOMONAS STUTZERI TITLE 2 ZOBELL FERROCYTOCHROME C-551 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-551; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME C551, CYTOCHROME C8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI ZOBELL; SOURCE 3 ORGANISM_TAXID: 96564; SOURCE 4 STRAIN: ZOBELL; SOURCE 5 GENE: NIRM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: UT5600; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBR329 KEYWDS HELIX-TURN-HELIX, CYTOCHROME, ELECTRON TRANSPORT EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR Q.LIANG,R.TIMKOVICH REVDAT 6 12-AUG-26 2I8F 1 COMPND FORMUL REVDAT 5 20-NOV-24 2I8F 1 REMARK REVDAT 4 20-OCT-21 2I8F 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2I8F 1 VERSN REVDAT 2 04-SEP-07 2I8F 1 JRNL REVDAT 1 05-JUN-07 2I8F 0 JRNL AUTH Q.LIANG,G.T.MILLER,C.A.BEEGHLEY,C.B.GRAF,R.TIMKOVICH JRNL TITL SOLUTION CONFORMATION OF THE HIS-47 TO ALA-47 MUTANT OF JRNL TITL 2 PSEUDOMONAS STUTZERI ZOBELL FERROCYTOCHROME C-551. JRNL REF BIOPHYS.J. V. 93 1700 2007 JRNL REFN ISSN 0006-3495 JRNL PMID 17496029 JRNL DOI 10.1529/BIOPHYSJ.106.102772 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.0 ALPHA, CNS 1.1 REMARK 3 AUTHORS : M.NILGES, S. I. O'DONOGHUE (ARIA), A. BRUNGER, P. REMARK 3 D. ADAMS, G. M. CLORE, W. L. DELANO, P. GROS, R. REMARK 3 W. GROSS-KUNSTLEVE, J. S. JIANG, J. KUSZEWSKI, M. REMARK 3 NILGES, N. S. PANNU, R. J. READ, L. M. RICE, T. REMARK 3 SIMONSON, G. L. WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1511 RESTRAINTS, 1414 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 67 DIHEDRAL ANGLE RESTRAINTS, 30 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 2I8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039267. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM H47A C-551, 50 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE JULY, 2004, TOPSPIN 1.3, REMARK 210 NMRVIEW 6.2.10 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -61.91 -124.41 REMARK 500 MET A 22 -64.47 -99.41 REMARK 500 ALA A 35 74.26 -101.97 REMARK 500 VAL A 55 -42.62 -144.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 83 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 HEC A 83 NA 89.8 REMARK 620 3 HEC A 83 NB 90.2 90.2 REMARK 620 4 HEC A 83 NC 90.4 179.8 89.8 REMARK 620 5 HEC A 83 ND 89.5 90.1 179.5 89.9 REMARK 620 6 MET A 61 SD 177.9 88.2 90.4 91.7 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 83 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CCH RELATED DB: PDB REMARK 900 1CCH IS THE SOLUTION CONFORMATION OF CYTOCHROME C-551 FROM REMARK 900 PSEUDOMONAS STUTZERI ZOBELL DETERMINED BY NMR DBREF 2I8F A 1 82 UNP P00101 CY551_PSEST 23 104 SEQADV 2I8F ALA A 47 UNP P00101 HIS 69 ENGINEERED MUTATION SEQRES 1 A 82 GLN ASP GLY GLU ALA LEU PHE LYS SER LYS PRO CYS ALA SEQRES 2 A 82 ALA CYS HIS SER VAL ASP THR LYS MET VAL GLY PRO ALA SEQRES 3 A 82 LEU LYS GLU VAL ALA ALA LYS ASN ALA GLY VAL GLU GLY SEQRES 4 A 82 ALA ALA ASP THR LEU ALA LEU ALA ILE LYS ASN GLY SER SEQRES 5 A 82 GLN GLY VAL TRP GLY PRO ILE PRO MET PRO PRO ASN PRO SEQRES 6 A 82 VAL THR GLU GLU GLU ALA LYS ILE LEU ALA GLU TRP VAL SEQRES 7 A 82 LEU SER LEU LYS HET HEC A 83 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H36 FE N4 O4 HELIX 1 1 ASP A 2 LYS A 10 1 9 HELIX 2 2 ALA A 26 ASN A 34 1 9 HELIX 3 3 GLY A 39 ASN A 50 1 12 HELIX 4 4 THR A 67 SER A 80 1 14 LINK SG CYS A 12 CAB HEC A 83 1555 1555 1.83 LINK SG CYS A 15 CAC HEC A 83 1555 1555 1.84 LINK NE2 HIS A 16 FE HEC A 83 1555 1555 1.96 LINK SD MET A 61 FE HEC A 83 1555 1555 2.38 SITE 1 AC1 16 PRO A 11 CYS A 12 CYS A 15 HIS A 16 SITE 2 AC1 16 PRO A 25 LEU A 44 ALA A 47 ILE A 48 SITE 3 AC1 16 SER A 52 GLY A 54 VAL A 55 TRP A 56 SITE 4 AC1 16 GLY A 57 ILE A 59 MET A 61 LEU A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 177 1224 CONECT 207 1232 CONECT 221 1202 CONECT 852 1202 CONECT 1202 221 852 1207 1218 CONECT 1202 1226 1234 CONECT 1203 1208 1238 1245 CONECT 1204 1211 1219 1246 CONECT 1205 1222 1227 1247 CONECT 1206 1230 1235 1248 CONECT 1207 1202 1208 1211 CONECT 1208 1203 1207 1209 CONECT 1209 1208 1210 1213 CONECT 1210 1209 1211 1212 CONECT 1211 1204 1207 1210 CONECT 1212 1210 1249 1250 1251 CONECT 1213 1209 1214 1252 1253 CONECT 1214 1213 1215 1254 1255 CONECT 1215 1214 1216 1217 CONECT 1216 1215 CONECT 1217 1215 CONECT 1218 1202 1219 1222 CONECT 1219 1204 1218 1220 CONECT 1220 1219 1221 1223 CONECT 1221 1220 1222 1224 CONECT 1222 1205 1218 1221 CONECT 1223 1220 1256 1257 1258 CONECT 1224 177 1221 1225 1259 CONECT 1225 1224 1260 1261 1262 CONECT 1226 1202 1227 1230 CONECT 1227 1205 1226 1228 CONECT 1228 1227 1229 1231 CONECT 1229 1228 1230 1232 CONECT 1230 1206 1226 1229 CONECT 1231 1228 1263 1264 1265 CONECT 1232 207 1229 1233 1266 CONECT 1233 1232 1267 1268 1269 CONECT 1234 1202 1235 1238 CONECT 1235 1206 1234 1236 CONECT 1236 1235 1237 1239 CONECT 1237 1236 1238 1240 CONECT 1238 1203 1234 1237 CONECT 1239 1236 1270 1271 1272 CONECT 1240 1237 1241 1273 1274 CONECT 1241 1240 1242 1275 1276 CONECT 1242 1241 1243 1244 CONECT 1243 1242 CONECT 1244 1242 CONECT 1245 1203 CONECT 1246 1204 CONECT 1247 1205 CONECT 1248 1206 CONECT 1249 1212 CONECT 1250 1212 CONECT 1251 1212 CONECT 1252 1213 CONECT 1253 1213 CONECT 1254 1214 CONECT 1255 1214 CONECT 1256 1223 CONECT 1257 1223 CONECT 1258 1223 CONECT 1259 1224 CONECT 1260 1225 CONECT 1261 1225 CONECT 1262 1225 CONECT 1263 1231 CONECT 1264 1231 CONECT 1265 1231 CONECT 1266 1232 CONECT 1267 1233 CONECT 1268 1233 CONECT 1269 1233 CONECT 1270 1239 CONECT 1271 1239 CONECT 1272 1239 CONECT 1273 1240 CONECT 1274 1240 CONECT 1275 1241 CONECT 1276 1241 MASTER 121 0 1 4 0 0 4 6 638 1 80 7 END