HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-SEP-06 2I8G OBSLTE 25-JAN-12 2I8G 3V7B TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION DIP2269 FROM TITLE 2 CORYNEBACTERIUM DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN DIP2269; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE NCTC 13129; SOURCE 3 ORGANISM_TAXID: 257309; SOURCE 4 STRAIN: NCTC13129; SOURCE 5 GENE: DIP2269; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, APC82926, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,E.DUGGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-JAN-12 2I8G 1 OBSLTE REVDAT 3 13-JUL-11 2I8G 1 VERSN REVDAT 2 24-FEB-09 2I8G 1 VERSN REVDAT 1 03-OCT-06 2I8G 0 JRNL AUTH J.OSIPIUK,E.DUGGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN DIP2269 FROM JRNL TITL 2 CORYNEBACTERIUM DIPHTHERIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 25697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : 2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2383 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1599 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3270 ; 1.550 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3906 ; 0.969 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.167 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;13.303 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 462 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1718 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1126 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1168 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.260 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 1.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 593 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2420 ; 1.506 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 2.403 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 840 ; 3.522 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5751 19.6184 3.5466 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: -0.0004 REMARK 3 T33: 0.1257 T12: -0.0067 REMARK 3 T13: 0.0188 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.7762 L22: 3.2374 REMARK 3 L33: 1.3580 L12: 1.8759 REMARK 3 L13: -0.6846 L23: 0.6840 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0984 S13: 0.2458 REMARK 3 S21: -0.0188 S22: -0.0599 S23: -0.1692 REMARK 3 S31: -0.1490 S32: 0.0761 S33: 0.0327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9789 27.3812 9.3012 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0215 REMARK 3 T33: 0.1193 T12: 0.0112 REMARK 3 T13: -0.0051 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.1962 L22: 1.3611 REMARK 3 L33: 2.0500 L12: -0.5138 REMARK 3 L13: -0.3859 L23: 1.1516 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.0517 S13: 0.1635 REMARK 3 S21: 0.0127 S22: 0.0086 S23: -0.0098 REMARK 3 S31: 0.0102 S32: -0.1038 S33: 0.0496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3043 19.1331 6.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0198 REMARK 3 T33: 0.0593 T12: 0.0033 REMARK 3 T13: 0.0067 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6624 L22: 1.2689 REMARK 3 L33: 0.2755 L12: -0.1576 REMARK 3 L13: -0.1535 L23: 0.5800 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0371 S13: 0.0380 REMARK 3 S21: 0.0348 S22: 0.0221 S23: -0.0355 REMARK 3 S31: 0.0224 S32: 0.0041 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6989 5.2833 12.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0314 REMARK 3 T33: 0.0260 T12: 0.0047 REMARK 3 T13: 0.0100 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0795 L22: 2.6433 REMARK 3 L33: 1.1675 L12: 0.4580 REMARK 3 L13: -0.2745 L23: -1.5483 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0060 S13: -0.1607 REMARK 3 S21: 0.0635 S22: 0.0874 S23: -0.0320 REMARK 3 S31: -0.0652 S32: -0.0993 S33: -0.0628 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4949 12.6566 13.6457 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0356 REMARK 3 T33: 0.0252 T12: 0.0100 REMARK 3 T13: -0.0154 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.4672 L22: 2.7773 REMARK 3 L33: 1.1544 L12: -0.0922 REMARK 3 L13: -0.4111 L23: 1.5600 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0775 S13: -0.2099 REMARK 3 S21: 0.1086 S22: 0.0820 S23: -0.1371 REMARK 3 S31: -0.0219 S32: -0.0006 S33: -0.0946 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9256 16.6176 10.0947 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: 0.0240 REMARK 3 T33: 0.0755 T12: -0.0063 REMARK 3 T13: 0.0097 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.5449 L22: 0.2557 REMARK 3 L33: 4.9425 L12: -0.3761 REMARK 3 L13: 1.0868 L23: -0.6814 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0324 S13: 0.0179 REMARK 3 S21: 0.0557 S22: 0.0124 S23: 0.1661 REMARK 3 S31: 0.0124 S32: -0.2351 S33: -0.0121 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4282 15.5856 32.2739 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.0211 REMARK 3 T33: 0.0956 T12: 0.0223 REMARK 3 T13: 0.0293 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.8284 L22: 1.7060 REMARK 3 L33: 3.4113 L12: 2.5455 REMARK 3 L13: 1.0878 L23: 0.9280 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.1732 S13: -0.3294 REMARK 3 S21: -0.0005 S22: -0.0082 S23: -0.3928 REMARK 3 S31: 0.3262 S32: 0.1282 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3428 8.7696 26.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0236 REMARK 3 T33: 0.0396 T12: 0.0009 REMARK 3 T13: 0.0031 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.2175 L22: 1.0563 REMARK 3 L33: 1.5762 L12: 0.6802 REMARK 3 L13: 0.7927 L23: 1.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0549 S13: -0.0667 REMARK 3 S21: -0.0143 S22: 0.0005 S23: -0.0616 REMARK 3 S31: 0.0399 S32: 0.0032 S33: -0.0498 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0518 29.3196 25.6756 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: -0.0091 REMARK 3 T33: 0.1310 T12: 0.0137 REMARK 3 T13: 0.0052 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.1811 L22: 1.1008 REMARK 3 L33: 2.0308 L12: 0.2780 REMARK 3 L13: 0.7666 L23: -0.5080 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.0043 S13: 0.2769 REMARK 3 S21: -0.0316 S22: 0.0020 S23: 0.1055 REMARK 3 S31: 0.0008 S32: 0.0474 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6128 24.7368 20.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: -0.0183 REMARK 3 T33: 0.0442 T12: 0.0219 REMARK 3 T13: -0.0584 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.5801 L22: 1.8981 REMARK 3 L33: 32.8379 L12: -0.7497 REMARK 3 L13: -9.1508 L23: 3.4610 REMARK 3 S TENSOR REMARK 3 S11: -0.1756 S12: 0.0435 S13: 0.3321 REMARK 3 S21: -0.2505 S22: 0.3288 S23: 0.3971 REMARK 3 S31: 1.4542 S32: -0.2278 S33: -0.1531 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4613 20.1321 21.3656 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.0231 REMARK 3 T33: 0.0171 T12: 0.0087 REMARK 3 T13: 0.0101 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.2956 L22: 3.3589 REMARK 3 L33: 1.8405 L12: 0.4819 REMARK 3 L13: 0.6623 L23: 2.4317 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.1022 S13: 0.0877 REMARK 3 S21: -0.1726 S22: 0.0138 S23: -0.0788 REMARK 3 S31: -0.0084 S32: -0.0040 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0413 16.6849 27.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0446 REMARK 3 T33: 0.0592 T12: 0.0063 REMARK 3 T13: 0.0005 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.7035 L22: 1.0398 REMARK 3 L33: 6.8629 L12: 0.4017 REMARK 3 L13: -1.0454 L23: 1.1851 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0556 S13: 0.0257 REMARK 3 S21: -0.0437 S22: -0.1243 S23: 0.2338 REMARK 3 S31: 0.0140 S32: -0.2496 S33: 0.1355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 12.000 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 8000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.00100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.00100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 GLU B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 459 O HOH A 530 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 20 OE1 GLU A 20 2765 2.16 REMARK 500 O HOH A 486 O HOH A 543 3645 2.17 REMARK 500 O HOH A 453 O HOH A 535 2755 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 22 -78.91 -146.62 REMARK 500 SER A 59 -151.60 -113.61 REMARK 500 PRO B 16 -148.64 -75.74 REMARK 500 SER B 59 -151.58 -121.87 REMARK 500 HIS B 108 -163.79 -115.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 16 GLN B 17 -133.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC82926 RELATED DB: TARGETDB DBREF 2I8G A 1 148 UNP Q6NEK4 Q6NEK4_CORDI 1 148 DBREF 2I8G B 1 148 UNP Q6NEK4 Q6NEK4_CORDI 1 148 SEQADV 2I8G SER A -2 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G ASN A -1 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G ALA A 0 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G MSE A 1 UNP Q6NEK4 MET 1 MODIFIED RESIDUE SEQADV 2I8G MSE A 14 UNP Q6NEK4 MET 14 MODIFIED RESIDUE SEQADV 2I8G MSE A 41 UNP Q6NEK4 MET 41 MODIFIED RESIDUE SEQADV 2I8G MSE A 69 UNP Q6NEK4 MET 69 MODIFIED RESIDUE SEQADV 2I8G MSE A 73 UNP Q6NEK4 MET 73 MODIFIED RESIDUE SEQADV 2I8G MSE A 138 UNP Q6NEK4 MET 138 MODIFIED RESIDUE SEQADV 2I8G SER B -2 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G ASN B -1 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G ALA B 0 UNP Q6NEK4 CLONING ARTIFACT SEQADV 2I8G MSE B 1 UNP Q6NEK4 MET 1 MODIFIED RESIDUE SEQADV 2I8G MSE B 14 UNP Q6NEK4 MET 14 MODIFIED RESIDUE SEQADV 2I8G MSE B 41 UNP Q6NEK4 MET 41 MODIFIED RESIDUE SEQADV 2I8G MSE B 69 UNP Q6NEK4 MET 69 MODIFIED RESIDUE SEQADV 2I8G MSE B 73 UNP Q6NEK4 MET 73 MODIFIED RESIDUE SEQADV 2I8G MSE B 138 UNP Q6NEK4 MET 138 MODIFIED RESIDUE SEQRES 1 A 151 SER ASN ALA MSE VAL HIS ASP SER ALA LEU PRO PHE ASP SEQRES 2 A 151 ALA LEU PRO MSE PRO PRO GLN GLY ARG GLU GLY PHE GLU SEQRES 3 A 151 GLU CYS PRO TYR LEU ASP SER GLN TRP VAL ALA ASP THR SEQRES 4 A 151 ASN GLY GLN ARG MSE THR GLY GLN GLY VAL ASP THR ARG SEQRES 5 A 151 PHE ASP THR PRO ALA CYS VAL PHE TRP SER TYR PRO GLU SEQRES 6 A 151 ALA PRO GLN ALA THR VAL MSE VAL ARG HIS MSE PRO SER SEQRES 7 A 151 GLU GLU GLU ALA ILE ARG VAL VAL ASP TRP ALA ALA PRO SEQRES 8 A 151 ILE ASP THR THR GLU PRO ALA GLU GLU PRO ASP GLY TRP SEQRES 9 A 151 SER GLY GLY ARG ALA GLY HIS GLU GLU GLY ALA VAL TYR SEQRES 10 A 151 ALA VAL GLN LYS GLY PRO VAL ALA VAL VAL VAL TRP SER SEQRES 11 A 151 ASN GLN GLN GLN SER LEU LYS ALA GLU LEU MSE ALA LYS SEQRES 12 A 151 GLU ALA ILE ALA ARG LEU GLY LEU SEQRES 1 B 151 SER ASN ALA MSE VAL HIS ASP SER ALA LEU PRO PHE ASP SEQRES 2 B 151 ALA LEU PRO MSE PRO PRO GLN GLY ARG GLU GLY PHE GLU SEQRES 3 B 151 GLU CYS PRO TYR LEU ASP SER GLN TRP VAL ALA ASP THR SEQRES 4 B 151 ASN GLY GLN ARG MSE THR GLY GLN GLY VAL ASP THR ARG SEQRES 5 B 151 PHE ASP THR PRO ALA CYS VAL PHE TRP SER TYR PRO GLU SEQRES 6 B 151 ALA PRO GLN ALA THR VAL MSE VAL ARG HIS MSE PRO SER SEQRES 7 B 151 GLU GLU GLU ALA ILE ARG VAL VAL ASP TRP ALA ALA PRO SEQRES 8 B 151 ILE ASP THR THR GLU PRO ALA GLU GLU PRO ASP GLY TRP SEQRES 9 B 151 SER GLY GLY ARG ALA GLY HIS GLU GLU GLY ALA VAL TYR SEQRES 10 B 151 ALA VAL GLN LYS GLY PRO VAL ALA VAL VAL VAL TRP SER SEQRES 11 B 151 ASN GLN GLN GLN SER LEU LYS ALA GLU LEU MSE ALA LYS SEQRES 12 B 151 GLU ALA ILE ALA ARG LEU GLY LEU MODRES 2I8G MSE A 14 MET SELENOMETHIONINE MODRES 2I8G MSE A 41 MET SELENOMETHIONINE MODRES 2I8G MSE A 69 MET SELENOMETHIONINE MODRES 2I8G MSE A 73 MET SELENOMETHIONINE MODRES 2I8G MSE A 138 MET SELENOMETHIONINE MODRES 2I8G MSE B 14 MET SELENOMETHIONINE MODRES 2I8G MSE B 41 MET SELENOMETHIONINE MODRES 2I8G MSE B 69 MET SELENOMETHIONINE MODRES 2I8G MSE B 73 MET SELENOMETHIONINE MODRES 2I8G MSE B 138 MET SELENOMETHIONINE HET MSE A 14 13 HET MSE A 41 8 HET MSE A 69 8 HET MSE A 73 8 HET MSE A 138 8 HET MSE B 14 13 HET MSE B 41 8 HET MSE B 69 8 HET MSE B 73 8 HET MSE B 138 8 HET EDO A 401 4 HET EDO B 402 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *263(H2 O) HELIX 1 1 HIS A 3 LEU A 7 5 5 HELIX 2 2 ASP A 29 GLY A 38 1 10 HELIX 3 3 SER A 75 ALA A 87 1 13 HELIX 4 4 GLN A 131 GLY A 147 1 17 HELIX 5 5 HIS B 3 LEU B 7 5 5 HELIX 6 6 ASP B 29 GLY B 38 1 10 HELIX 7 7 SER B 75 ALA B 87 1 13 HELIX 8 8 GLN B 131 GLY B 147 1 17 SHEET 1 A 7 GLY A 43 ASP A 47 0 SHEET 2 A 7 ALA A 54 TRP A 58 -1 O TRP A 58 N GLY A 43 SHEET 3 A 7 ALA A 66 HIS A 72 -1 O VAL A 68 N CYS A 55 SHEET 4 A 7 VAL A 121 SER A 127 -1 O ALA A 122 N ARG A 71 SHEET 5 A 7 GLY A 111 LYS A 118 -1 N VAL A 116 O VAL A 123 SHEET 6 A 7 SER A 102 HIS A 108 -1 N HIS A 108 O GLY A 111 SHEET 7 A 7 GLU A 93 ALA A 95 -1 N GLU A 93 O ARG A 105 SHEET 1 B 7 GLY B 43 ASP B 47 0 SHEET 2 B 7 ALA B 54 TRP B 58 -1 O TRP B 58 N GLY B 43 SHEET 3 B 7 ALA B 66 HIS B 72 -1 O VAL B 68 N CYS B 55 SHEET 4 B 7 VAL B 121 SER B 127 -1 O ALA B 122 N ARG B 71 SHEET 5 B 7 GLY B 111 LYS B 118 -1 N VAL B 116 O VAL B 123 SHEET 6 B 7 SER B 102 HIS B 108 -1 N GLY B 104 O ALA B 115 SHEET 7 B 7 GLU B 93 ALA B 95 -1 N GLU B 93 O ARG B 105 SSBOND 1 CYS A 25 CYS A 55 1555 1555 2.10 SSBOND 2 CYS B 25 CYS B 55 1555 1555 2.15 LINK C PRO A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N PRO A 15 1555 1555 1.34 LINK C ARG A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N THR A 42 1555 1555 1.32 LINK C VAL A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N VAL A 70 1555 1555 1.33 LINK C HIS A 72 N MSE A 73 1555 1555 1.32 LINK C MSE A 73 N PRO A 74 1555 1555 1.36 LINK C LEU A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ALA A 139 1555 1555 1.33 LINK C PRO B 13 N MSE B 14 1555 1555 1.32 LINK C MSE B 14 N PRO B 15 1555 1555 1.36 LINK C ARG B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N THR B 42 1555 1555 1.33 LINK C VAL B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N VAL B 70 1555 1555 1.33 LINK C HIS B 72 N MSE B 73 1555 1555 1.32 LINK C MSE B 73 N PRO B 74 1555 1555 1.36 LINK C LEU B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N ALA B 139 1555 1555 1.33 CISPEP 1 GLU A 97 PRO A 98 0 -5.58 CISPEP 2 GLU B 97 PRO B 98 0 -0.24 SITE 1 AC1 5 PRO A 64 THR A 67 TRP A 126 HOH A 447 SITE 2 AC1 5 HOH A 459 SITE 1 AC2 5 PRO B 64 THR B 67 TRP B 126 HOH B 466 SITE 2 AC2 5 HOH B 490 CRYST1 54.002 66.752 70.287 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014227 0.00000