HEADER HYDROLASE 03-SEP-06 2I8T TITLE GDP-MANNOSE MANNOSYL HYDROLASE-CALCIUM-GDP-MANNOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-MANNOSE MANNOSYL HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: O128; SOURCE 5 GENE: GMM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-14 KEYWDS NUDIX ENZYME, LIPOPOLYSACCHARIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZOU,C.LI,J.S.BRUNZELLE,S.K.NAIR REVDAT 4 21-FEB-24 2I8T 1 REMARK LINK REVDAT 3 13-JUL-11 2I8T 1 VERSN REVDAT 2 24-FEB-09 2I8T 1 VERSN REVDAT 1 19-JUN-07 2I8T 0 JRNL AUTH Y.ZOU,C.LI,J.S.BRUNZELLE,S.K.NAIR JRNL TITL MOLECULAR BASIS FOR SUBSTRATE SELECTIVITY AND SPECIFICITY BY JRNL TITL 2 AN LPS BIOSYNTHETIC ENZYME JRNL REF BIOCHEMISTRY V. 46 4294 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17371001 JRNL DOI 10.1021/BI061056U REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 94526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 6806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 421 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2610 ; 0.002 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1748 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3558 ; 1.703 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4188 ; 1.035 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 4.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;27.391 ;22.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;11.016 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2878 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 438 ; 0.186 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1892 ; 0.192 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1248 ; 0.186 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1346 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 689 ; 0.143 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.114 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.098 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.357 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 105 ; 0.138 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 0.875 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 602 ; 0.146 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2380 ; 1.298 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 1.112 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 1.586 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5119 ; 0.469 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 595 ;19.806 ;35.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4286 ; 1.705 ;35.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2I8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 4000 200 MM SODIUM ACETATE REMARK 280 100 MM HEPES, PH 8.0 HARVESTED IMMEDIATELY AFTER GROWTH, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.81800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.79300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.79300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A DIMER WHICH IS PRESENT AS AN NCS REMARK 300 UNIT IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 150 REMARK 465 ASN A 151 REMARK 465 ASP A 152 REMARK 465 PRO A 153 REMARK 465 ARG A 154 REMARK 465 ALA A 155 REMARK 465 ILE A 156 REMARK 465 ILE A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 ASN A 160 REMARK 465 LYS A 161 REMARK 465 LYS A 162 REMARK 465 GLU A 163 REMARK 465 VAL A 164 REMARK 465 LYS A 165 REMARK 465 ASN A 166 REMARK 465 VAL A 167 REMARK 465 MET B 1 REMARK 465 ASN B 151 REMARK 465 ASP B 152 REMARK 465 PRO B 153 REMARK 465 ARG B 154 REMARK 465 ALA B 155 REMARK 465 ILE B 156 REMARK 465 ILE B 157 REMARK 465 GLY B 158 REMARK 465 LEU B 159 REMARK 465 ASN B 160 REMARK 465 LYS B 161 REMARK 465 LYS B 162 REMARK 465 GLU B 163 REMARK 465 VAL B 164 REMARK 465 LYS B 165 REMARK 465 ASN B 166 REMARK 465 VAL B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASN B 150 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 956 O HOH A 1071 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 2 -65.64 -104.52 REMARK 500 ASN B 27 -161.79 -100.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 50 O REMARK 620 2 GLU A 70 OE2 81.8 REMARK 620 3 GLN A 123 OE1 164.9 83.7 REMARK 620 4 GDD A 820 O2B 101.9 176.3 92.7 REMARK 620 5 GDD A 820 O2A 97.2 96.2 88.3 84.0 REMARK 620 6 HOH A 965 O 83.5 85.1 91.3 94.8 178.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 50 O REMARK 620 2 GLU B 70 OE2 81.4 REMARK 620 3 GLN B 123 OE1 164.9 84.5 REMARK 620 4 GDD B 800 O2B 98.3 179.4 95.9 REMARK 620 5 GDD B 800 O2A 99.0 96.0 87.7 83.5 REMARK 620 6 HOH B 805 O 82.3 86.7 91.6 93.8 177.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 720 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I8O RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE REMARK 900 RELATED ID: 2I8P RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE BOUND TO GDP REMARK 900 RELATED ID: 2I8Q RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE, H124L MUTANT BOUND TO GDP-MANNOSE REMARK 900 RELATED ID: 2I8R RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE MUTANT H124L BOUND TO GDP-GLUCOSE REMARK 900 RELATED ID: 2I8S RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE VARIANTS H124L BOUND TO GDP-BETA-L- REMARK 900 FUCOSE REMARK 900 RELATED ID: 2I8U RELATED DB: PDB REMARK 900 GDP-MANNOSE MANNOSYL HYDROLASE-CALCIUM-GDP PRODUCT COMPLEX DBREF 2I8T A 1 167 UNP Q6XQ58 Q6XQ58_ECOLI 1 167 DBREF 2I8T B 1 167 UNP Q6XQ58 Q6XQ58_ECOLI 1 167 SEQRES 1 A 167 MET MET PHE LEU ARG GLN GLU ASP PHE ALA THR VAL VAL SEQRES 2 A 167 ARG SER THR PRO LEU VAL SER LEU ASP PHE ILE VAL GLU SEQRES 3 A 167 ASN SER ARG GLY GLU PHE LEU LEU GLY LYS ARG THR ASN SEQRES 4 A 167 ARG PRO ALA GLN GLY TYR TRP PHE VAL PRO GLY GLY ARG SEQRES 5 A 167 VAL GLN LYS ASP GLU THR LEU GLU ALA ALA PHE GLU ARG SEQRES 6 A 167 LEU THR MET ALA GLU LEU GLY LEU ARG LEU PRO ILE THR SEQRES 7 A 167 ALA GLY GLN PHE TYR GLY VAL TRP GLN HIS PHE TYR ASP SEQRES 8 A 167 ASP ASN PHE SER GLY THR ASP PHE THR THR HIS TYR VAL SEQRES 9 A 167 VAL LEU GLY PHE ARG PHE ARG VAL ALA GLU GLU GLU LEU SEQRES 10 A 167 LEU LEU PRO ASP GLU GLN HIS ASP ASP TYR ARG TRP LEU SEQRES 11 A 167 THR PRO ASP ALA LEU LEU ALA SER GLU ASN VAL HIS ALA SEQRES 12 A 167 ASN SER ARG VAL TYR PHE ASN ASN ASP PRO ARG ALA ILE SEQRES 13 A 167 ILE GLY LEU ASN LYS LYS GLU VAL LYS ASN VAL SEQRES 1 B 167 MET MET PHE LEU ARG GLN GLU ASP PHE ALA THR VAL VAL SEQRES 2 B 167 ARG SER THR PRO LEU VAL SER LEU ASP PHE ILE VAL GLU SEQRES 3 B 167 ASN SER ARG GLY GLU PHE LEU LEU GLY LYS ARG THR ASN SEQRES 4 B 167 ARG PRO ALA GLN GLY TYR TRP PHE VAL PRO GLY GLY ARG SEQRES 5 B 167 VAL GLN LYS ASP GLU THR LEU GLU ALA ALA PHE GLU ARG SEQRES 6 B 167 LEU THR MET ALA GLU LEU GLY LEU ARG LEU PRO ILE THR SEQRES 7 B 167 ALA GLY GLN PHE TYR GLY VAL TRP GLN HIS PHE TYR ASP SEQRES 8 B 167 ASP ASN PHE SER GLY THR ASP PHE THR THR HIS TYR VAL SEQRES 9 B 167 VAL LEU GLY PHE ARG PHE ARG VAL ALA GLU GLU GLU LEU SEQRES 10 B 167 LEU LEU PRO ASP GLU GLN HIS ASP ASP TYR ARG TRP LEU SEQRES 11 B 167 THR PRO ASP ALA LEU LEU ALA SER GLU ASN VAL HIS ALA SEQRES 12 B 167 ASN SER ARG VAL TYR PHE ASN ASN ASP PRO ARG ALA ILE SEQRES 13 B 167 ILE GLY LEU ASN LYS LYS GLU VAL LYS ASN VAL HET CA A 402 1 HET GDD A 820 39 HET GOL A 720 6 HET CA B 400 1 HET GDD B 800 39 HET GOL B 700 6 HETNAM CA CALCIUM ION HETNAM GDD GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 GDD 2(C16 H25 N5 O16 P2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *593(H2 O) HELIX 1 1 ARG A 5 THR A 16 1 12 HELIX 2 2 THR A 58 GLY A 72 1 15 HELIX 3 3 PRO A 76 GLY A 80 5 5 HELIX 4 4 ALA A 113 LEU A 117 5 5 HELIX 5 5 THR A 131 ALA A 137 1 7 HELIX 6 6 HIS A 142 VAL A 147 1 6 HELIX 7 7 ARG B 5 THR B 16 1 12 HELIX 8 8 THR B 58 GLY B 72 1 15 HELIX 9 9 PRO B 76 GLY B 80 5 5 HELIX 10 10 ALA B 113 LEU B 117 5 5 HELIX 11 11 THR B 131 ALA B 137 1 7 HELIX 12 12 HIS B 142 VAL B 147 1 6 HELIX 13 13 TYR B 148 ASN B 150 5 3 SHEET 1 A 4 GLY A 50 ARG A 52 0 SHEET 2 A 4 LEU A 18 GLU A 26 -1 N LEU A 21 O GLY A 51 SHEET 3 A 4 THR A 101 ARG A 111 1 O HIS A 102 N LEU A 18 SHEET 4 A 4 GLN A 81 TYR A 90 -1 N TYR A 83 O GLY A 107 SHEET 1 B 3 TRP A 46 PHE A 47 0 SHEET 2 B 3 PHE A 32 ARG A 37 -1 N GLY A 35 O PHE A 47 SHEET 3 B 3 HIS A 124 LEU A 130 -1 O LEU A 130 N PHE A 32 SHEET 1 C 4 GLY B 50 ARG B 52 0 SHEET 2 C 4 LEU B 18 GLU B 26 -1 N LEU B 21 O GLY B 51 SHEET 3 C 4 THR B 101 ARG B 111 1 O HIS B 102 N LEU B 18 SHEET 4 C 4 GLN B 81 TYR B 90 -1 N TYR B 83 O GLY B 107 SHEET 1 D 3 TRP B 46 PHE B 47 0 SHEET 2 D 3 PHE B 32 ARG B 37 -1 N GLY B 35 O PHE B 47 SHEET 3 D 3 HIS B 124 LEU B 130 -1 O LEU B 130 N PHE B 32 LINK O GLY A 50 CA CA A 402 1555 1555 2.31 LINK OE2 GLU A 70 CA CA A 402 1555 1555 2.45 LINK OE1 GLN A 123 CA CA A 402 1555 1555 2.40 LINK CA CA A 402 O2B GDD A 820 1555 1555 2.35 LINK CA CA A 402 O2A GDD A 820 1555 1555 2.26 LINK CA CA A 402 O HOH A 965 1555 1555 2.37 LINK O GLY B 50 CA CA B 400 1555 1555 2.27 LINK OE2 GLU B 70 CA CA B 400 1555 1555 2.37 LINK OE1 GLN B 123 CA CA B 400 1555 1555 2.40 LINK CA CA B 400 O2B GDD B 800 1555 1555 2.25 LINK CA CA B 400 O2A GDD B 800 1555 1555 2.23 LINK CA CA B 400 O HOH B 805 1555 1555 2.34 CISPEP 1 ARG A 40 PRO A 41 0 -4.26 CISPEP 2 ARG B 40 PRO B 41 0 -4.34 SITE 1 AC1 5 GLY B 50 GLU B 70 GLN B 123 GDD B 800 SITE 2 AC1 5 HOH B 805 SITE 1 AC2 5 GLY A 50 GLU A 70 GLN A 123 GDD A 820 SITE 2 AC2 5 HOH A 965 SITE 1 AC3 28 PHE B 3 LEU B 4 PHE B 9 SER B 20 SITE 2 AC3 28 ASP B 22 ARG B 37 ASN B 39 ALA B 42 SITE 3 AC3 28 PHE B 47 GLY B 50 GLY B 51 ARG B 52 SITE 4 AC3 28 GLU B 70 HIS B 88 TYR B 90 PHE B 94 SITE 5 AC3 28 TYR B 103 GLN B 123 CA B 400 HOH B 810 SITE 6 AC3 28 HOH B 821 HOH B 835 HOH B 838 HOH B 888 SITE 7 AC3 28 HOH B 905 HOH B 908 HOH B 922 HOH B 964 SITE 1 AC4 28 PHE A 3 LEU A 4 PHE A 9 SER A 20 SITE 2 AC4 28 ASP A 22 ARG A 37 ASN A 39 ALA A 42 SITE 3 AC4 28 PHE A 47 GLY A 50 GLY A 51 ARG A 52 SITE 4 AC4 28 GLU A 70 HIS A 88 TYR A 90 PHE A 94 SITE 5 AC4 28 TYR A 103 GLN A 123 CA A 402 HOH A 932 SITE 6 AC4 28 HOH A 937 HOH A 970 HOH A 971 HOH A 974 SITE 7 AC4 28 HOH A 975 HOH A 979 HOH A 987 HOH A1071 SITE 1 AC5 4 GLY B 84 VAL B 85 HOH B 974 HOH B 987 SITE 1 AC6 3 GLY A 84 VAL A 85 HOH A 999 CRYST1 49.636 81.586 98.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010173 0.00000