HEADER HYDROLASE 05-SEP-06 2I9A TITLE CRYSTAL STRUCTURE OF THE FREE AMINOTERMINAL FRAGMENT OF UROKINASE TYPE TITLE 2 PLASMINOGEN ACTIVATOR (ATF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE-TYPE PLASMINOGEN ACTIVATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT OF UROKINASE, RESIDUES 21-163; COMPND 5 EC: 3.4.21.73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLAU; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER'S S2 CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS KEYWDS GROWTH FACTOR-LIKE DOMAIN, KRINGLE DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,C.BARINKA REVDAT 6 30-AUG-23 2I9A 1 REMARK SEQADV REVDAT 5 18-OCT-17 2I9A 1 REMARK REVDAT 4 13-JUL-11 2I9A 1 VERSN REVDAT 3 24-FEB-09 2I9A 1 VERSN REVDAT 2 05-DEC-06 2I9A 1 JRNL REVDAT 1 28-NOV-06 2I9A 0 JRNL AUTH C.BARINKA,G.PARRY,J.CALLAHAN,D.E.SHAW,A.KUO,K.BDEIR, JRNL AUTH 2 D.B.CINES,A.MAZAR,J.LUBKOWSKI JRNL TITL STRUCTURAL BASIS OF INTERACTION BETWEEN UROKINASE-TYPE JRNL TITL 2 PLASMINOGEN ACTIVATOR AND ITS RECEPTOR. JRNL REF J.MOL.BIOL. V. 363 482 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16979660 JRNL DOI 10.1016/J.JMB.2006.08.063 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 51775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2757 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : -0.75000 REMARK 3 B23 (A**2) : -0.46000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4046 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5493 ; 1.489 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;32.287 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;13.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3152 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1690 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2759 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3939 ; 1.544 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 2.534 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1554 ; 3.810 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8976 -21.5679 11.9219 REMARK 3 T TENSOR REMARK 3 T11: -0.1135 T22: -0.1121 REMARK 3 T33: -0.0457 T12: 0.0018 REMARK 3 T13: -0.0250 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.0149 L22: 3.2058 REMARK 3 L33: 1.9821 L12: -0.0878 REMARK 3 L13: -0.2195 L23: 1.2002 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.0719 S13: -0.1471 REMARK 3 S21: -0.2673 S22: -0.0179 S23: 0.2845 REMARK 3 S31: -0.0365 S32: -0.0624 S33: 0.0492 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9236 14.5811 -12.5860 REMARK 3 T TENSOR REMARK 3 T11: -0.1393 T22: -0.1044 REMARK 3 T33: -0.1084 T12: -0.0249 REMARK 3 T13: -0.0042 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.3627 L22: 1.0650 REMARK 3 L33: 3.6435 L12: -0.2424 REMARK 3 L13: -0.7174 L23: 0.3892 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: -0.0321 S13: -0.0370 REMARK 3 S21: 0.1065 S22: 0.0126 S23: -0.0247 REMARK 3 S31: 0.1348 S32: 0.2299 S33: 0.1400 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 132 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8654 -41.7918 17.0832 REMARK 3 T TENSOR REMARK 3 T11: -0.1341 T22: -0.0980 REMARK 3 T33: -0.1206 T12: -0.0124 REMARK 3 T13: 0.0143 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.7118 L22: 2.8025 REMARK 3 L33: 1.3353 L12: -1.4365 REMARK 3 L13: 0.4633 L23: -0.6349 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0522 S13: 0.1207 REMARK 3 S21: 0.0468 S22: -0.0288 S23: -0.0907 REMARK 3 S31: -0.0176 S32: 0.1201 S33: 0.0599 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 132 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8240 3.3816 27.0875 REMARK 3 T TENSOR REMARK 3 T11: -0.1334 T22: -0.1502 REMARK 3 T33: -0.1215 T12: -0.0181 REMARK 3 T13: 0.0099 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.9408 L22: 1.3173 REMARK 3 L33: 1.9763 L12: -0.6539 REMARK 3 L13: 0.7095 L23: -0.4773 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.0069 S13: 0.0707 REMARK 3 S21: -0.0441 S22: 0.0239 S23: -0.0537 REMARK 3 S31: -0.2062 S32: -0.0532 S33: -0.0363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.13539 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 225 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54650 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 19.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22100 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1URK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM DIHYDROGEN PHOSPHATE, 0.8 REMARK 280 M POTASSIUM HYDROGEN PHOSPHATE, 200 MM LITHIUM SULFATE, 100 MM REMARK 280 CHES, PH 10.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 4 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 HIS A 5 REMARK 465 GLN A 6 REMARK 465 VAL A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ASP A 133 REMARK 465 GLY A 134 REMARK 465 LYS A 135 REMARK 465 LYS A 136 REMARK 465 PRO A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 PRO A 140 REMARK 465 PRO A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 SER B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 HIS B 5 REMARK 465 ASP B 133 REMARK 465 GLY B 134 REMARK 465 LYS B 135 REMARK 465 LYS B 136 REMARK 465 PRO B 137 REMARK 465 SER B 138 REMARK 465 SER B 139 REMARK 465 PRO B 140 REMARK 465 PRO B 141 REMARK 465 GLU B 142 REMARK 465 GLU B 143 REMARK 465 ARG C -1 REMARK 465 SER C 0 REMARK 465 SER C 1 REMARK 465 ASN C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 HIS C 5 REMARK 465 GLN C 6 REMARK 465 VAL C 7 REMARK 465 PRO C 8 REMARK 465 SER C 9 REMARK 465 ASN C 10 REMARK 465 GLY C 134 REMARK 465 LYS C 135 REMARK 465 LYS C 136 REMARK 465 PRO C 137 REMARK 465 SER C 138 REMARK 465 SER C 139 REMARK 465 PRO C 140 REMARK 465 PRO C 141 REMARK 465 GLU C 142 REMARK 465 GLU C 143 REMARK 465 ARG D -1 REMARK 465 SER D 0 REMARK 465 SER D 1 REMARK 465 ASN D 2 REMARK 465 GLU D 3 REMARK 465 LEU D 4 REMARK 465 HIS D 5 REMARK 465 GLN D 6 REMARK 465 VAL D 7 REMARK 465 PRO D 8 REMARK 465 SER D 9 REMARK 465 GLY D 134 REMARK 465 LYS D 135 REMARK 465 LYS D 136 REMARK 465 PRO D 137 REMARK 465 SER D 138 REMARK 465 SER D 139 REMARK 465 PRO D 140 REMARK 465 PRO D 141 REMARK 465 GLU D 142 REMARK 465 GLU D 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 12 CG OD1 OD2 REMARK 470 LYS A 35 CD CE NZ REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 GLN B 40 CD OE1 NE2 REMARK 470 GLN B 93 CD OE1 NE2 REMARK 470 LYS C 35 CD CE NZ REMARK 470 GLN C 40 CG CD OE1 NE2 REMARK 470 GLN C 93 CD OE1 NE2 REMARK 470 ASN D 27 CG OD1 ND2 REMARK 470 LYS D 35 CG CD CE NZ REMARK 470 GLN D 93 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 -131.71 -119.57 REMARK 500 SER A 63 27.80 -150.51 REMARK 500 VAL A 128 140.18 -38.53 REMARK 500 CYS B 11 -131.48 -117.81 REMARK 500 SER B 63 27.76 -147.61 REMARK 500 ARG B 108 -178.75 -69.96 REMARK 500 SER C 63 20.19 -149.41 REMARK 500 ARG C 108 -171.10 -68.24 REMARK 500 SER D 63 20.55 -147.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATF-UROKINASE RECEPTOR COMPLEX DBREF 2I9A A 1 143 UNP P00749 UROK_HUMAN 21 163 DBREF 2I9A B 1 143 UNP P00749 UROK_HUMAN 21 163 DBREF 2I9A C 1 143 UNP P00749 UROK_HUMAN 21 163 DBREF 2I9A D 1 143 UNP P00749 UROK_HUMAN 21 163 SEQADV 2I9A ARG A -1 UNP P00749 CLONING ARTIFACT SEQADV 2I9A SER A 0 UNP P00749 CLONING ARTIFACT SEQADV 2I9A ARG B -1 UNP P00749 CLONING ARTIFACT SEQADV 2I9A SER B 0 UNP P00749 CLONING ARTIFACT SEQADV 2I9A ARG C -1 UNP P00749 CLONING ARTIFACT SEQADV 2I9A SER C 0 UNP P00749 CLONING ARTIFACT SEQADV 2I9A ARG D -1 UNP P00749 CLONING ARTIFACT SEQADV 2I9A SER D 0 UNP P00749 CLONING ARTIFACT SEQRES 1 A 145 ARG SER SER ASN GLU LEU HIS GLN VAL PRO SER ASN CYS SEQRES 2 A 145 ASP CYS LEU ASN GLY GLY THR CYS VAL SER ASN LYS TYR SEQRES 3 A 145 PHE SER ASN ILE HIS TRP CYS ASN CYS PRO LYS LYS PHE SEQRES 4 A 145 GLY GLY GLN HIS CYS GLU ILE ASP LYS SER LYS THR CYS SEQRES 5 A 145 TYR GLU GLY ASN GLY HIS PHE TYR ARG GLY LYS ALA SER SEQRES 6 A 145 THR ASP THR MET GLY ARG PRO CYS LEU PRO TRP ASN SER SEQRES 7 A 145 ALA THR VAL LEU GLN GLN THR TYR HIS ALA HIS ARG SER SEQRES 8 A 145 ASP ALA LEU GLN LEU GLY LEU GLY LYS HIS ASN TYR CYS SEQRES 9 A 145 ARG ASN PRO ASP ASN ARG ARG ARG PRO TRP CYS TYR VAL SEQRES 10 A 145 GLN VAL GLY LEU LYS PRO LEU VAL GLN GLU CYS MET VAL SEQRES 11 A 145 HIS ASP CYS ALA ASP GLY LYS LYS PRO SER SER PRO PRO SEQRES 12 A 145 GLU GLU SEQRES 1 B 145 ARG SER SER ASN GLU LEU HIS GLN VAL PRO SER ASN CYS SEQRES 2 B 145 ASP CYS LEU ASN GLY GLY THR CYS VAL SER ASN LYS TYR SEQRES 3 B 145 PHE SER ASN ILE HIS TRP CYS ASN CYS PRO LYS LYS PHE SEQRES 4 B 145 GLY GLY GLN HIS CYS GLU ILE ASP LYS SER LYS THR CYS SEQRES 5 B 145 TYR GLU GLY ASN GLY HIS PHE TYR ARG GLY LYS ALA SER SEQRES 6 B 145 THR ASP THR MET GLY ARG PRO CYS LEU PRO TRP ASN SER SEQRES 7 B 145 ALA THR VAL LEU GLN GLN THR TYR HIS ALA HIS ARG SER SEQRES 8 B 145 ASP ALA LEU GLN LEU GLY LEU GLY LYS HIS ASN TYR CYS SEQRES 9 B 145 ARG ASN PRO ASP ASN ARG ARG ARG PRO TRP CYS TYR VAL SEQRES 10 B 145 GLN VAL GLY LEU LYS PRO LEU VAL GLN GLU CYS MET VAL SEQRES 11 B 145 HIS ASP CYS ALA ASP GLY LYS LYS PRO SER SER PRO PRO SEQRES 12 B 145 GLU GLU SEQRES 1 C 145 ARG SER SER ASN GLU LEU HIS GLN VAL PRO SER ASN CYS SEQRES 2 C 145 ASP CYS LEU ASN GLY GLY THR CYS VAL SER ASN LYS TYR SEQRES 3 C 145 PHE SER ASN ILE HIS TRP CYS ASN CYS PRO LYS LYS PHE SEQRES 4 C 145 GLY GLY GLN HIS CYS GLU ILE ASP LYS SER LYS THR CYS SEQRES 5 C 145 TYR GLU GLY ASN GLY HIS PHE TYR ARG GLY LYS ALA SER SEQRES 6 C 145 THR ASP THR MET GLY ARG PRO CYS LEU PRO TRP ASN SER SEQRES 7 C 145 ALA THR VAL LEU GLN GLN THR TYR HIS ALA HIS ARG SER SEQRES 8 C 145 ASP ALA LEU GLN LEU GLY LEU GLY LYS HIS ASN TYR CYS SEQRES 9 C 145 ARG ASN PRO ASP ASN ARG ARG ARG PRO TRP CYS TYR VAL SEQRES 10 C 145 GLN VAL GLY LEU LYS PRO LEU VAL GLN GLU CYS MET VAL SEQRES 11 C 145 HIS ASP CYS ALA ASP GLY LYS LYS PRO SER SER PRO PRO SEQRES 12 C 145 GLU GLU SEQRES 1 D 145 ARG SER SER ASN GLU LEU HIS GLN VAL PRO SER ASN CYS SEQRES 2 D 145 ASP CYS LEU ASN GLY GLY THR CYS VAL SER ASN LYS TYR SEQRES 3 D 145 PHE SER ASN ILE HIS TRP CYS ASN CYS PRO LYS LYS PHE SEQRES 4 D 145 GLY GLY GLN HIS CYS GLU ILE ASP LYS SER LYS THR CYS SEQRES 5 D 145 TYR GLU GLY ASN GLY HIS PHE TYR ARG GLY LYS ALA SER SEQRES 6 D 145 THR ASP THR MET GLY ARG PRO CYS LEU PRO TRP ASN SER SEQRES 7 D 145 ALA THR VAL LEU GLN GLN THR TYR HIS ALA HIS ARG SER SEQRES 8 D 145 ASP ALA LEU GLN LEU GLY LEU GLY LYS HIS ASN TYR CYS SEQRES 9 D 145 ARG ASN PRO ASP ASN ARG ARG ARG PRO TRP CYS TYR VAL SEQRES 10 D 145 GLN VAL GLY LEU LYS PRO LEU VAL GLN GLU CYS MET VAL SEQRES 11 D 145 HIS ASP CYS ALA ASP GLY LYS LYS PRO SER SER PRO PRO SEQRES 12 D 145 GLU GLU HET PO4 C 802 5 HET PO4 D 803 5 HET PO4 D 804 5 HET PO4 D 805 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *361(H2 O) HELIX 1 1 THR A 78 GLN A 82 5 5 HELIX 2 2 ASP A 90 GLY A 95 1 6 HELIX 3 3 THR B 78 GLN B 82 5 5 HELIX 4 4 ASP B 90 GLY B 95 1 6 HELIX 5 5 THR C 78 GLN C 82 5 5 HELIX 6 6 ASP C 90 GLY C 95 1 6 HELIX 7 7 THR D 78 GLN D 82 5 5 HELIX 8 8 ASP D 90 GLY D 95 1 6 SHEET 1 A 2 THR A 18 SER A 21 0 SHEET 2 A 2 HIS A 29 ASN A 32 -1 O ASN A 32 N THR A 18 SHEET 1 B 2 PHE A 37 GLY A 38 0 SHEET 2 B 2 ILE A 44 ASP A 45 -1 O ILE A 44 N GLY A 38 SHEET 1 C 2 CYS A 50 TYR A 51 0 SHEET 2 C 2 HIS A 129 ASP A 130 1 O HIS A 129 N TYR A 51 SHEET 1 D 2 TRP A 112 VAL A 117 0 SHEET 2 D 2 LYS A 120 GLU A 125 -1 O LEU A 122 N VAL A 115 SHEET 1 E 2 THR B 18 SER B 21 0 SHEET 2 E 2 HIS B 29 ASN B 32 -1 O TRP B 30 N VAL B 20 SHEET 1 F 2 PHE B 37 GLY B 38 0 SHEET 2 F 2 ILE B 44 ASP B 45 -1 O ILE B 44 N GLY B 38 SHEET 1 G 2 CYS B 50 TYR B 51 0 SHEET 2 G 2 HIS B 129 ASP B 130 1 O HIS B 129 N TYR B 51 SHEET 1 H 2 TRP B 112 VAL B 117 0 SHEET 2 H 2 LYS B 120 GLU B 125 -1 O LYS B 120 N VAL B 117 SHEET 1 I 2 THR C 18 SER C 21 0 SHEET 2 I 2 HIS C 29 ASN C 32 -1 O ASN C 32 N THR C 18 SHEET 1 J 2 PHE C 37 GLY C 38 0 SHEET 2 J 2 ILE C 44 ASP C 45 -1 O ILE C 44 N GLY C 38 SHEET 1 K 2 TRP C 112 VAL C 117 0 SHEET 2 K 2 LYS C 120 GLU C 125 -1 O LYS C 120 N VAL C 117 SHEET 1 L 2 THR D 18 SER D 21 0 SHEET 2 L 2 HIS D 29 ASN D 32 -1 O ASN D 32 N THR D 18 SHEET 1 M 2 PHE D 37 GLY D 38 0 SHEET 2 M 2 ILE D 44 ASP D 45 -1 O ILE D 44 N GLY D 38 SHEET 1 N 2 TRP D 112 VAL D 117 0 SHEET 2 N 2 LYS D 120 GLU D 125 -1 O LEU D 122 N VAL D 115 SSBOND 1 CYS A 11 CYS A 19 1555 1555 2.04 SSBOND 2 CYS A 13 CYS A 31 1555 1555 2.05 SSBOND 3 CYS A 33 CYS A 42 1555 1555 2.07 SSBOND 4 CYS A 50 CYS A 131 1555 1555 2.04 SSBOND 5 CYS A 71 CYS A 113 1555 1555 2.05 SSBOND 6 CYS A 102 CYS A 126 1555 1555 2.02 SSBOND 7 CYS B 11 CYS B 19 1555 1555 2.03 SSBOND 8 CYS B 13 CYS B 31 1555 1555 2.03 SSBOND 9 CYS B 33 CYS B 42 1555 1555 2.09 SSBOND 10 CYS B 50 CYS B 131 1555 1555 2.05 SSBOND 11 CYS B 71 CYS B 113 1555 1555 2.05 SSBOND 12 CYS B 102 CYS B 126 1555 1555 2.01 SSBOND 13 CYS C 11 CYS C 19 1555 1555 2.00 SSBOND 14 CYS C 13 CYS C 31 1555 1555 2.06 SSBOND 15 CYS C 33 CYS C 42 1555 1555 2.08 SSBOND 16 CYS C 50 CYS C 131 1555 1555 2.06 SSBOND 17 CYS C 71 CYS C 113 1555 1555 2.03 SSBOND 18 CYS C 102 CYS C 126 1555 1555 2.03 SSBOND 19 CYS D 11 CYS D 19 1555 1555 2.01 SSBOND 20 CYS D 13 CYS D 31 1555 1555 2.02 SSBOND 21 CYS D 33 CYS D 42 1555 1555 2.04 SSBOND 22 CYS D 50 CYS D 131 1555 1555 2.06 SSBOND 23 CYS D 71 CYS D 113 1555 1555 2.05 SSBOND 24 CYS D 102 CYS D 126 1555 1555 2.01 SITE 1 AC1 4 ARG B 109 ASN C 75 HIS C 87 LYS C 98 SITE 1 AC2 8 ARG A 109 HOH A 190 ASN D 75 HIS D 87 SITE 2 AC2 8 LYS D 98 HOH D 872 HOH D 883 HOH D 895 SITE 1 AC3 3 ARG D 110 HIS D 129 HOH D 901 SITE 1 AC4 2 ARG D 108 ARG D 109 CRYST1 47.603 64.327 64.623 107.62 92.11 95.75 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021007 0.002115 0.001498 0.00000 SCALE2 0.000000 0.015624 0.005061 0.00000 SCALE3 0.000000 0.000000 0.016277 0.00000