HEADER TRANSFERASE 05-SEP-06 2I9D TITLE CHLORAMPHENICOL ACETYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORAMPHENICOL ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CHLORAMPHENICOL ACETYLTRANSFERASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.E.C.DUKE,H.LI,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 16-OCT-24 2I9D 1 SEQADV LINK REVDAT 4 18-OCT-17 2I9D 1 REMARK REVDAT 3 13-JUL-11 2I9D 1 VERSN REVDAT 2 24-FEB-09 2I9D 1 VERSN REVDAT 1 17-OCT-06 2I9D 0 JRNL AUTH N.E.C.DUKE,H.LI,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CHLORAMPHENICOL ACETYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4917 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5042 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6812 ; 1.485 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 6.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;36.606 ;23.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 838 ;16.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;14.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 715 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3939 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2211 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3417 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 269 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.345 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3083 ; 1.131 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4807 ; 1.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2224 ; 2.686 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2005 ; 3.764 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792896, 0.9794257 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SAGITTALLY FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% V/V TACSIMATE 0.10 M BIS-TRIS REMARK 280 PROPANE, PH 7.0 (HAMPTON RESEARCH SALTRX, REAGENT NUMBER 96, REMARK 280 I.E. H12) , PH 7.00, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.62100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.24200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.43150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.05250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.81050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 LYS B 90 REMARK 465 ILE B 91 REMARK 465 LYS B 92 REMARK 465 GLU B 93 REMARK 465 ASN B 94 REMARK 465 GLY B 95 REMARK 465 LYS B 96 REMARK 465 ILE B 122 REMARK 465 PRO B 123 REMARK 465 GLU B 124 REMARK 465 ASP B 125 REMARK 465 GLY B 126 REMARK 465 ASP B 127 REMARK 465 PRO B 128 REMARK 465 TYR B 129 REMARK 465 ALA B 130 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 ASN B 133 REMARK 465 GLU B 134 REMARK 465 GLU B 135 REMARK 465 VAL B 136 REMARK 465 ALA B 137 REMARK 465 ASP B 138 REMARK 465 LYS C 90 REMARK 465 ILE C 91 REMARK 465 LYS C 92 REMARK 465 GLU C 93 REMARK 465 ASN C 94 REMARK 465 GLY C 95 REMARK 465 LYS C 96 REMARK 465 ILE C 122 REMARK 465 PRO C 123 REMARK 465 GLU C 124 REMARK 465 ASP C 125 REMARK 465 GLY C 126 REMARK 465 ASP C 127 REMARK 465 PRO C 128 REMARK 465 TYR C 129 REMARK 465 ALA C 130 REMARK 465 ALA C 131 REMARK 465 GLU C 132 REMARK 465 ASN C 133 REMARK 465 GLU C 134 REMARK 465 GLU C 135 REMARK 465 VAL C 136 REMARK 465 ALA C 137 REMARK 465 ASP C 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS B 2 O MSE C 1 5554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 27 CA - CB - CG ANGL. DEV. = 21.0 DEGREES REMARK 500 LEU A 27 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU B 27 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -149.85 -75.87 REMARK 500 TRP A 10 114.77 66.83 REMARK 500 CYS A 35 19.24 -149.08 REMARK 500 ASN B -1 44.76 -92.75 REMARK 500 CYS B 35 15.92 -152.19 REMARK 500 ASP B 120 29.51 -76.69 REMARK 500 MSE C 1 -80.05 -51.12 REMARK 500 LYS C 2 140.11 53.76 REMARK 500 CYS C 35 13.10 -140.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 213 LYS A 214 149.41 REMARK 500 LEU B 213 LYS B 214 148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81922 RELATED DB: TARGETDB DBREF 2I9D A 1 214 UNP Q8A336 Q8A336_BACTN 1 214 DBREF 2I9D B 1 214 UNP Q8A336 Q8A336_BACTN 1 214 DBREF 2I9D C 1 214 UNP Q8A336 Q8A336_BACTN 1 214 SEQADV 2I9D SER A -2 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ASN A -1 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ALA A 0 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D MSE A 1 UNP Q8A336 MET 1 MODIFIED RESIDUE SEQADV 2I9D MSE A 85 UNP Q8A336 MET 85 MODIFIED RESIDUE SEQADV 2I9D MSE A 186 UNP Q8A336 MET 186 MODIFIED RESIDUE SEQADV 2I9D MSE A 190 UNP Q8A336 MET 190 MODIFIED RESIDUE SEQADV 2I9D SER B -2 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ASN B -1 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ALA B 0 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D MSE B 1 UNP Q8A336 MET 1 MODIFIED RESIDUE SEQADV 2I9D MSE B 85 UNP Q8A336 MET 85 MODIFIED RESIDUE SEQADV 2I9D MSE B 186 UNP Q8A336 MET 186 MODIFIED RESIDUE SEQADV 2I9D MSE B 190 UNP Q8A336 MET 190 MODIFIED RESIDUE SEQADV 2I9D SER C -2 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ASN C -1 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D ALA C 0 UNP Q8A336 CLONING ARTIFACT SEQADV 2I9D MSE C 1 UNP Q8A336 MET 1 MODIFIED RESIDUE SEQADV 2I9D MSE C 85 UNP Q8A336 MET 85 MODIFIED RESIDUE SEQADV 2I9D MSE C 186 UNP Q8A336 MET 186 MODIFIED RESIDUE SEQADV 2I9D MSE C 190 UNP Q8A336 MET 190 MODIFIED RESIDUE SEQRES 1 A 217 SER ASN ALA MSE LYS GLN ILE ILE ASP ILE GLU ASN TRP SEQRES 2 A 217 GLU ARG LYS GLU ASN PHE ASN PHE PHE ARG HIS PHE GLN SEQRES 3 A 217 ASN PRO GLN LEU SER ILE THR SER GLU VAL GLU CYS GLY SEQRES 4 A 217 GLY ALA ARG GLN ARG ALA LYS ALA ALA GLY GLN SER PHE SEQRES 5 A 217 PHE LEU HIS TYR LEU TYR ALA VAL LEU ARG ALA ALA ASN SEQRES 6 A 217 GLU ILE PRO GLU PHE ARG TYR ARG ILE ASP PRO ASP GLY SEQRES 7 A 217 ARG VAL VAL LEU TYR ASP THR ILE ASP MSE LEU SER PRO SEQRES 8 A 217 ILE LYS ILE LYS GLU ASN GLY LYS PHE PHE THR THR ARG SEQRES 9 A 217 PHE PRO TYR HIS ASN ASP PHE ASP THR PHE TYR GLN GLU SEQRES 10 A 217 ALA ARG LEU ILE ILE ASP ALA ILE PRO GLU ASP GLY ASP SEQRES 11 A 217 PRO TYR ALA ALA GLU ASN GLU GLU VAL ALA ASP GLY ASP SEQRES 12 A 217 TYR GLY LEU ILE LEU LEU SER ALA THR PRO ASP LEU TYR SEQRES 13 A 217 PHE THR SER ILE THR GLY THR GLN GLU LYS ARG SER GLY SEQRES 14 A 217 ASN ASN TYR PRO LEU LEU ASN ALA GLY LYS ALA ILE ILE SEQRES 15 A 217 ARG GLU GLY ARG LEU VAL MSE PRO ILE ALA MSE THR ILE SEQRES 16 A 217 HIS HIS GLY PHE ILE ASP GLY HIS HIS LEU SER LEU PHE SEQRES 17 A 217 TYR LYS LYS VAL GLU ASP PHE LEU LYS SEQRES 1 B 217 SER ASN ALA MSE LYS GLN ILE ILE ASP ILE GLU ASN TRP SEQRES 2 B 217 GLU ARG LYS GLU ASN PHE ASN PHE PHE ARG HIS PHE GLN SEQRES 3 B 217 ASN PRO GLN LEU SER ILE THR SER GLU VAL GLU CYS GLY SEQRES 4 B 217 GLY ALA ARG GLN ARG ALA LYS ALA ALA GLY GLN SER PHE SEQRES 5 B 217 PHE LEU HIS TYR LEU TYR ALA VAL LEU ARG ALA ALA ASN SEQRES 6 B 217 GLU ILE PRO GLU PHE ARG TYR ARG ILE ASP PRO ASP GLY SEQRES 7 B 217 ARG VAL VAL LEU TYR ASP THR ILE ASP MSE LEU SER PRO SEQRES 8 B 217 ILE LYS ILE LYS GLU ASN GLY LYS PHE PHE THR THR ARG SEQRES 9 B 217 PHE PRO TYR HIS ASN ASP PHE ASP THR PHE TYR GLN GLU SEQRES 10 B 217 ALA ARG LEU ILE ILE ASP ALA ILE PRO GLU ASP GLY ASP SEQRES 11 B 217 PRO TYR ALA ALA GLU ASN GLU GLU VAL ALA ASP GLY ASP SEQRES 12 B 217 TYR GLY LEU ILE LEU LEU SER ALA THR PRO ASP LEU TYR SEQRES 13 B 217 PHE THR SER ILE THR GLY THR GLN GLU LYS ARG SER GLY SEQRES 14 B 217 ASN ASN TYR PRO LEU LEU ASN ALA GLY LYS ALA ILE ILE SEQRES 15 B 217 ARG GLU GLY ARG LEU VAL MSE PRO ILE ALA MSE THR ILE SEQRES 16 B 217 HIS HIS GLY PHE ILE ASP GLY HIS HIS LEU SER LEU PHE SEQRES 17 B 217 TYR LYS LYS VAL GLU ASP PHE LEU LYS SEQRES 1 C 217 SER ASN ALA MSE LYS GLN ILE ILE ASP ILE GLU ASN TRP SEQRES 2 C 217 GLU ARG LYS GLU ASN PHE ASN PHE PHE ARG HIS PHE GLN SEQRES 3 C 217 ASN PRO GLN LEU SER ILE THR SER GLU VAL GLU CYS GLY SEQRES 4 C 217 GLY ALA ARG GLN ARG ALA LYS ALA ALA GLY GLN SER PHE SEQRES 5 C 217 PHE LEU HIS TYR LEU TYR ALA VAL LEU ARG ALA ALA ASN SEQRES 6 C 217 GLU ILE PRO GLU PHE ARG TYR ARG ILE ASP PRO ASP GLY SEQRES 7 C 217 ARG VAL VAL LEU TYR ASP THR ILE ASP MSE LEU SER PRO SEQRES 8 C 217 ILE LYS ILE LYS GLU ASN GLY LYS PHE PHE THR THR ARG SEQRES 9 C 217 PHE PRO TYR HIS ASN ASP PHE ASP THR PHE TYR GLN GLU SEQRES 10 C 217 ALA ARG LEU ILE ILE ASP ALA ILE PRO GLU ASP GLY ASP SEQRES 11 C 217 PRO TYR ALA ALA GLU ASN GLU GLU VAL ALA ASP GLY ASP SEQRES 12 C 217 TYR GLY LEU ILE LEU LEU SER ALA THR PRO ASP LEU TYR SEQRES 13 C 217 PHE THR SER ILE THR GLY THR GLN GLU LYS ARG SER GLY SEQRES 14 C 217 ASN ASN TYR PRO LEU LEU ASN ALA GLY LYS ALA ILE ILE SEQRES 15 C 217 ARG GLU GLY ARG LEU VAL MSE PRO ILE ALA MSE THR ILE SEQRES 16 C 217 HIS HIS GLY PHE ILE ASP GLY HIS HIS LEU SER LEU PHE SEQRES 17 C 217 TYR LYS LYS VAL GLU ASP PHE LEU LYS MODRES 2I9D MSE A 1 MET SELENOMETHIONINE MODRES 2I9D MSE A 85 MET SELENOMETHIONINE MODRES 2I9D MSE A 186 MET SELENOMETHIONINE MODRES 2I9D MSE A 190 MET SELENOMETHIONINE MODRES 2I9D MSE B 1 MET SELENOMETHIONINE MODRES 2I9D MSE B 85 MET SELENOMETHIONINE MODRES 2I9D MSE B 186 MET SELENOMETHIONINE MODRES 2I9D MSE B 190 MET SELENOMETHIONINE MODRES 2I9D MSE C 1 MET SELENOMETHIONINE MODRES 2I9D MSE C 85 MET SELENOMETHIONINE MODRES 2I9D MSE C 186 MET SELENOMETHIONINE MODRES 2I9D MSE C 190 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 85 8 HET MSE A 186 8 HET MSE A 190 8 HET MSE B 1 8 HET MSE B 85 8 HET MSE B 186 8 HET MSE B 190 8 HET MSE C 1 8 HET MSE C 85 8 HET MSE C 186 8 HET MSE C 190 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 HOH *216(H2 O) HELIX 1 1 ARG A 12 ARG A 20 1 9 HELIX 2 2 CYS A 35 ALA A 45 1 11 HELIX 3 3 SER A 48 ILE A 64 1 17 HELIX 4 4 PRO A 65 PHE A 67 5 3 HELIX 5 5 ASP A 107 ILE A 122 1 16 HELIX 6 6 TYR A 129 GLY A 139 1 11 HELIX 7 7 ASP A 198 LYS A 214 1 17 HELIX 8 8 ASP B 6 TRP B 10 5 5 HELIX 9 9 ARG B 12 ARG B 20 1 9 HELIX 10 10 CYS B 35 ALA B 45 1 11 HELIX 11 11 SER B 48 ILE B 64 1 17 HELIX 12 12 PRO B 65 PHE B 67 5 3 HELIX 13 13 ASP B 107 ASP B 120 1 14 HELIX 14 14 ASP B 198 LYS B 214 1 17 HELIX 15 15 ASP C 6 TRP C 10 5 5 HELIX 16 16 ARG C 12 ARG C 20 1 9 HELIX 17 17 CYS C 35 GLY C 46 1 12 HELIX 18 18 SER C 48 ILE C 64 1 17 HELIX 19 19 PRO C 65 PHE C 67 5 3 HELIX 20 20 ASP C 107 ALA C 121 1 15 HELIX 21 21 ASP C 198 LYS C 214 1 17 SHEET 1 A 3 LYS A 2 ILE A 4 0 SHEET 2 A 3 VAL A 77 TYR A 80 -1 O LEU A 79 N GLN A 3 SHEET 3 A 3 TYR A 69 ILE A 71 -1 N ARG A 70 O VAL A 78 SHEET 1 B 6 PHE A 97 PHE A 102 0 SHEET 2 B 6 ASP A 84 LYS A 90 -1 N MSE A 85 O PHE A 102 SHEET 3 B 6 LEU A 143 ALA A 148 1 O ILE A 144 N LEU A 86 SHEET 4 B 6 LEU A 171 ALA A 174 1 O LEU A 172 N LEU A 145 SHEET 5 B 6 ARG A 183 HIS A 193 -1 O ALA A 189 N ASN A 173 SHEET 6 B 6 ILE A 178 ARG A 180 -1 N ILE A 178 O VAL A 185 SHEET 1 C 7 PHE A 97 PHE A 102 0 SHEET 2 C 7 ASP A 84 LYS A 90 -1 N MSE A 85 O PHE A 102 SHEET 3 C 7 LEU A 143 ALA A 148 1 O ILE A 144 N LEU A 86 SHEET 4 C 7 LEU A 171 ALA A 174 1 O LEU A 172 N LEU A 145 SHEET 5 C 7 ARG A 183 HIS A 193 -1 O ALA A 189 N ASN A 173 SHEET 6 C 7 GLN A 26 GLU A 34 -1 N LEU A 27 O ILE A 192 SHEET 7 C 7 SER C 156 THR C 158 -1 O THR C 158 N SER A 28 SHEET 1 D 7 SER A 156 ILE A 157 0 SHEET 2 D 7 GLN B 26 GLU B 34 -1 O THR B 30 N SER A 156 SHEET 3 D 7 ARG B 183 HIS B 193 -1 O MSE B 186 N VAL B 33 SHEET 4 D 7 LEU B 171 ALA B 174 -1 N ASN B 173 O ALA B 189 SHEET 5 D 7 LEU B 143 ALA B 148 1 N LEU B 145 O LEU B 172 SHEET 6 D 7 ASP B 84 PRO B 88 1 N LEU B 86 O ILE B 144 SHEET 7 D 7 THR B 99 PHE B 102 -1 O PHE B 102 N MSE B 85 SHEET 1 E 4 SER A 156 ILE A 157 0 SHEET 2 E 4 GLN B 26 GLU B 34 -1 O THR B 30 N SER A 156 SHEET 3 E 4 ARG B 183 HIS B 193 -1 O MSE B 186 N VAL B 33 SHEET 4 E 4 ILE B 178 ARG B 180 -1 N ILE B 178 O VAL B 185 SHEET 1 F 3 LYS B 2 ILE B 4 0 SHEET 2 F 3 VAL B 77 TYR B 80 -1 O LEU B 79 N GLN B 3 SHEET 3 F 3 TYR B 69 ILE B 71 -1 N ARG B 70 O VAL B 78 SHEET 1 G 7 SER B 156 THR B 158 0 SHEET 2 G 7 GLN C 26 GLU C 34 -1 O SER C 28 N THR B 158 SHEET 3 G 7 ARG C 183 HIS C 193 -1 O ILE C 188 N SER C 31 SHEET 4 G 7 LEU C 171 ALA C 174 -1 N LEU C 171 O THR C 191 SHEET 5 G 7 LEU C 143 ALA C 148 1 N LEU C 145 O LEU C 172 SHEET 6 G 7 ASP C 84 PRO C 88 1 N LEU C 86 O ILE C 144 SHEET 7 G 7 THR C 99 PHE C 102 -1 O PHE C 102 N MSE C 85 SHEET 1 H 4 SER B 156 THR B 158 0 SHEET 2 H 4 GLN C 26 GLU C 34 -1 O SER C 28 N THR B 158 SHEET 3 H 4 ARG C 183 HIS C 193 -1 O ILE C 188 N SER C 31 SHEET 4 H 4 ILE C 178 ARG C 180 -1 N ILE C 178 O VAL C 185 SHEET 1 I 3 GLN C 3 ILE C 4 0 SHEET 2 I 3 VAL C 77 LEU C 79 -1 O LEU C 79 N GLN C 3 SHEET 3 I 3 TYR C 69 ILE C 71 -1 N ARG C 70 O VAL C 78 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASP A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N LEU A 86 1555 1555 1.33 LINK C VAL A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N PRO A 187 1555 1555 1.37 LINK C ALA A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N THR A 191 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C ASP B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N LEU B 86 1555 1555 1.33 LINK C VAL B 185 N MSE B 186 1555 1555 1.33 LINK C MSE B 186 N PRO B 187 1555 1555 1.36 LINK C ALA B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N THR B 191 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N LYS C 2 1555 1555 1.32 LINK C ASP C 84 N MSE C 85 1555 1555 1.32 LINK C MSE C 85 N LEU C 86 1555 1555 1.34 LINK C VAL C 185 N MSE C 186 1555 1555 1.33 LINK C MSE C 186 N PRO C 187 1555 1555 1.36 LINK C ALA C 189 N MSE C 190 1555 1555 1.33 LINK C MSE C 190 N THR C 191 1555 1555 1.32 CISPEP 1 SER B -2 ASN B -1 0 4.23 CRYST1 116.144 116.144 130.863 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.004971 0.000000 0.00000 SCALE2 0.000000 0.009942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007642 0.00000 HETATM 1 N MSE A 1 49.630 70.724 15.642 1.00 60.28 N HETATM 2 CA MSE A 1 49.130 71.864 16.482 1.00 60.97 C HETATM 3 C MSE A 1 47.612 72.071 16.369 1.00 58.82 C HETATM 4 O MSE A 1 47.093 72.339 15.283 1.00 58.20 O HETATM 5 CB MSE A 1 49.884 73.158 16.159 1.00 62.45 C HETATM 6 CG MSE A 1 51.227 73.306 16.882 1.00 70.77 C HETATM 7 SE MSE A 1 51.058 73.534 18.860 1.00 91.77 SE HETATM 8 CE MSE A 1 51.161 71.658 19.503 1.00 85.33 C