data_2I9X # _entry.id 2I9X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2I9X RCSB RCSB039321 WWPDB D_1000039321 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB APC86317.1 . unspecified PDB 2I9Z 'The full-length SpoVG from Staphylococcus epidermidis ATCC 12228' unspecified PDB 2IA9 'SpoVG from Bacillus subtilis subsp. subtilis str. 168' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2I9X _pdbx_database_status.recvd_initial_deposition_date 2006-09-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Maltseva, N.' 2 'Bargassa, M.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of SpoVG from Staphylococcus epidermidis ATCC 12228' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Maltseva, N.' 2 primary 'Bargassa, M.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2I9X _cell.length_a 64.550 _cell.length_b 64.550 _cell.length_c 97.711 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I9X _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative septation protein spoVG' 10096.718 2 ? ? 'conserved domain residues 1-84' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)KVTDVRLRKIQTDGR(MSE)KALVSITLDEAFVIHDLRVIEGNSGLFVA(MSE)PSKRTPDGEFRDIAHPIN SD(MSE)RQEIQDAV(MSE)KVYDETD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVM KVYDETD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC86317.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LYS n 1 6 VAL n 1 7 THR n 1 8 ASP n 1 9 VAL n 1 10 ARG n 1 11 LEU n 1 12 ARG n 1 13 LYS n 1 14 ILE n 1 15 GLN n 1 16 THR n 1 17 ASP n 1 18 GLY n 1 19 ARG n 1 20 MSE n 1 21 LYS n 1 22 ALA n 1 23 LEU n 1 24 VAL n 1 25 SER n 1 26 ILE n 1 27 THR n 1 28 LEU n 1 29 ASP n 1 30 GLU n 1 31 ALA n 1 32 PHE n 1 33 VAL n 1 34 ILE n 1 35 HIS n 1 36 ASP n 1 37 LEU n 1 38 ARG n 1 39 VAL n 1 40 ILE n 1 41 GLU n 1 42 GLY n 1 43 ASN n 1 44 SER n 1 45 GLY n 1 46 LEU n 1 47 PHE n 1 48 VAL n 1 49 ALA n 1 50 MSE n 1 51 PRO n 1 52 SER n 1 53 LYS n 1 54 ARG n 1 55 THR n 1 56 PRO n 1 57 ASP n 1 58 GLY n 1 59 GLU n 1 60 PHE n 1 61 ARG n 1 62 ASP n 1 63 ILE n 1 64 ALA n 1 65 HIS n 1 66 PRO n 1 67 ILE n 1 68 ASN n 1 69 SER n 1 70 ASP n 1 71 MSE n 1 72 ARG n 1 73 GLN n 1 74 GLU n 1 75 ILE n 1 76 GLN n 1 77 ASP n 1 78 ALA n 1 79 VAL n 1 80 MSE n 1 81 LYS n 1 82 VAL n 1 83 TYR n 1 84 ASP n 1 85 GLU n 1 86 THR n 1 87 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene 'spoVG, SE_2285' _entity_src_gen.gene_src_species 'Staphylococcus epidermidis' _entity_src_gen.gene_src_strain 'ATCC 12228' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus epidermidis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SP5G_STAES _struct_ref.pdbx_db_accession Q8CML1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2I9X A 4 ? 87 ? Q8CML1 1 ? 84 ? 1 84 2 1 2I9X B 4 ? 87 ? Q8CML1 1 ? 84 ? 1 84 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I9X SER A 1 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' -2 1 1 2I9X ASN A 2 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' -1 2 1 2I9X ALA A 3 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' 0 3 1 2I9X MSE A 4 ? UNP Q8CML1 MET 1 'MODIFIED RESIDUE' 1 4 1 2I9X MSE A 20 ? UNP Q8CML1 MET 17 'MODIFIED RESIDUE' 17 5 1 2I9X MSE A 50 ? UNP Q8CML1 MET 47 'MODIFIED RESIDUE' 47 6 1 2I9X MSE A 71 ? UNP Q8CML1 MET 68 'MODIFIED RESIDUE' 68 7 1 2I9X MSE A 80 ? UNP Q8CML1 MET 77 'MODIFIED RESIDUE' 77 8 2 2I9X SER B 1 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' -2 9 2 2I9X ASN B 2 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' -1 10 2 2I9X ALA B 3 ? UNP Q8CML1 ? ? 'CLONING ARTIFACT' 0 11 2 2I9X MSE B 4 ? UNP Q8CML1 MET 1 'MODIFIED RESIDUE' 1 12 2 2I9X MSE B 20 ? UNP Q8CML1 MET 17 'MODIFIED RESIDUE' 17 13 2 2I9X MSE B 50 ? UNP Q8CML1 MET 47 'MODIFIED RESIDUE' 47 14 2 2I9X MSE B 71 ? UNP Q8CML1 MET 68 'MODIFIED RESIDUE' 68 15 2 2I9X MSE B 80 ? UNP Q8CML1 MET 77 'MODIFIED RESIDUE' 77 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2I9X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '5%(w/v) isopropanol, 0.1M HEPES pH 7.5, 10%(v/w) PEG4000, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2006-06-02 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 Crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 2I9X _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 26.51 _reflns.d_resolution_high 1.8 _reflns.number_obs 19791 _reflns.number_all 19791 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.62 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.459 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.73 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I9X _refine.ls_number_reflns_obs 18719 _refine.ls_number_reflns_all 18720 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.85 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.18981 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18806 _refine.ls_R_factor_R_free 0.2226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1010 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 25.952 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.120 _refine.pdbx_overall_ESU_R_Free 0.117 _refine.overall_SU_ML 0.072 _refine.overall_SU_B 2.229 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1354 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 1529 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 24.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1385 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.491 1.972 ? 1853 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.527 5.000 ? 169 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.612 24.030 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.525 15.000 ? 263 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.717 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 213 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1016 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.223 0.200 ? 594 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 946 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.121 0.200 ? 141 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.123 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.169 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.368 1.500 ? 884 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.160 2.000 ? 1384 'X-RAY DIFFRACTION' ? r_scbond_it 3.087 3.000 ? 553 'X-RAY DIFFRACTION' ? r_scangle_it 4.890 4.500 ? 469 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1346 _refine_ls_shell.R_factor_R_work 0.211 _refine_ls_shell.percent_reflns_obs 99.86 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I9X _struct.title 'Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus epidermidis ATCC 12228' _struct.pdbx_descriptor 'Putative septation protein spoVG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I9X _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;APC86317.1, SpoVG, Staphylococcus epidermidis ATCC 12228, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 68 ? THR A 86 ? ASN A 65 THR A 83 1 ? 19 HELX_P HELX_P2 2 ASN B 68 ? THR B 86 ? ASN B 65 THR B 83 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A LYS 5 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A ARG 19 C ? ? ? 1_555 A MSE 20 N ? ? A ARG 16 A MSE 17 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? A MSE 20 C ? ? ? 1_555 A LYS 21 N ? ? A MSE 17 A LYS 18 1_555 ? ? ? ? ? ? ? 1.318 ? covale5 covale ? ? A ALA 49 C ? ? ? 1_555 A MSE 50 N ? ? A ALA 46 A MSE 47 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 50 C ? ? ? 1_555 A PRO 51 N ? ? A MSE 47 A PRO 48 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? A ASP 70 C ? ? ? 1_555 A MSE 71 N ? ? A ASP 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.338 ? covale8 covale ? ? A MSE 71 C ? ? ? 1_555 A ARG 72 N ? ? A MSE 68 A ARG 69 1_555 ? ? ? ? ? ? ? 1.339 ? covale9 covale ? ? A VAL 79 C ? ? ? 1_555 A MSE 80 N ? ? A VAL 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.337 ? covale10 covale ? ? A MSE 80 C ? ? ? 1_555 A LYS 81 N ? ? A MSE 77 A LYS 78 1_555 ? ? ? ? ? ? ? 1.324 ? covale11 covale ? ? B ALA 3 C ? ? ? 1_555 B MSE 4 N ? ? B ALA 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? B MSE 4 C ? ? ? 1_555 B LYS 5 N ? ? B MSE 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? B ARG 19 C ? ? ? 1_555 B MSE 20 N ? ? B ARG 16 B MSE 17 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? B MSE 20 C ? ? ? 1_555 B LYS 21 N ? ? B MSE 17 B LYS 18 1_555 ? ? ? ? ? ? ? 1.335 ? covale15 covale ? ? B ALA 49 C ? ? ? 1_555 B MSE 50 N ? ? B ALA 46 B MSE 47 1_555 ? ? ? ? ? ? ? 1.316 ? covale16 covale ? ? B MSE 50 C ? ? ? 1_555 B PRO 51 N ? ? B MSE 47 B PRO 48 1_555 ? ? ? ? ? ? ? 1.341 ? covale17 covale ? ? B ASP 70 C ? ? ? 1_555 B MSE 71 N ? ? B ASP 67 B MSE 68 1_555 ? ? ? ? ? ? ? 1.337 ? covale18 covale ? ? B MSE 71 C ? ? ? 1_555 B ARG 72 N ? ? B MSE 68 B ARG 69 1_555 ? ? ? ? ? ? ? 1.328 ? covale19 covale ? ? B VAL 79 C ? ? ? 1_555 B MSE 80 N ? ? B VAL 76 B MSE 77 1_555 ? ? ? ? ? ? ? 1.332 ? covale20 covale ? ? B MSE 80 C ? ? ? 1_555 B LYS 81 N ? ? B MSE 77 B LYS 78 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 57 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 54 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 58 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 55 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -14.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? D ? 4 ? E ? 3 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? LYS A 13 ? VAL A 3 LYS A 10 A 2 MSE A 20 ? LEU A 28 ? MSE A 17 LEU A 25 A 3 PHE A 32 ? GLY A 42 ? PHE A 29 GLY A 39 A 4 GLY A 45 ? ALA A 49 ? GLY A 42 ALA A 46 B 1 VAL A 6 ? LYS A 13 ? VAL A 3 LYS A 10 B 2 MSE A 20 ? LEU A 28 ? MSE A 17 LEU A 25 B 3 PHE A 32 ? GLY A 42 ? PHE A 29 GLY A 39 B 4 ALA B 64 ? PRO B 66 ? ALA B 61 PRO B 63 C 1 SER A 52 ? ARG A 54 ? SER A 49 ARG A 51 C 2 PHE A 60 ? ASP A 62 ? PHE A 57 ASP A 59 D 1 ALA A 64 ? PRO A 66 ? ALA A 61 PRO A 63 D 2 PHE B 32 ? GLY B 42 ? PHE B 29 GLY B 39 D 3 MSE B 20 ? LEU B 28 ? MSE B 17 LEU B 25 D 4 VAL B 6 ? LYS B 13 ? VAL B 3 LYS B 10 E 1 ALA A 64 ? PRO A 66 ? ALA A 61 PRO A 63 E 2 PHE B 32 ? GLY B 42 ? PHE B 29 GLY B 39 E 3 GLY B 45 ? ALA B 49 ? GLY B 42 ALA B 46 F 1 SER B 52 ? ARG B 54 ? SER B 49 ARG B 51 F 2 PHE B 60 ? ASP B 62 ? PHE B 57 ASP B 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 10 ? N ARG A 7 O SER A 25 ? O SER A 22 A 2 3 N LEU A 28 ? N LEU A 25 O PHE A 32 ? O PHE A 29 A 3 4 N ARG A 38 ? N ARG A 35 O ALA A 49 ? O ALA A 46 B 1 2 N ARG A 10 ? N ARG A 7 O SER A 25 ? O SER A 22 B 2 3 N LEU A 28 ? N LEU A 25 O PHE A 32 ? O PHE A 29 B 3 4 N VAL A 33 ? N VAL A 30 O HIS B 65 ? O HIS B 62 C 1 2 N LYS A 53 ? N LYS A 50 O ARG A 61 ? O ARG A 58 D 1 2 N HIS A 65 ? N HIS A 62 O VAL B 33 ? O VAL B 30 D 2 3 O VAL B 39 ? O VAL B 36 N LYS B 21 ? N LYS B 18 D 3 4 O SER B 25 ? O SER B 22 N ARG B 10 ? N ARG B 7 E 1 2 N HIS A 65 ? N HIS A 62 O VAL B 33 ? O VAL B 30 E 2 3 N ILE B 40 ? N ILE B 37 O PHE B 47 ? O PHE B 44 F 1 2 N LYS B 53 ? N LYS B 50 O ARG B 61 ? O ARG B 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO B 102' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 103' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO B 104' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 8 ? ASP A 5 . ? 1_555 ? 2 AC1 5 ARG A 10 ? ARG A 7 . ? 1_555 ? 3 AC1 5 SER A 25 ? SER A 22 . ? 1_555 ? 4 AC1 5 ILE A 26 ? ILE A 23 . ? 1_555 ? 5 AC1 5 THR A 27 ? THR A 24 . ? 1_555 ? 6 AC2 4 GLY A 58 ? GLY A 55 . ? 4_464 ? 7 AC2 4 PRO B 66 ? PRO B 63 . ? 1_555 ? 8 AC2 4 SER B 69 ? SER B 66 . ? 1_555 ? 9 AC2 4 ARG B 72 ? ARG B 69 . ? 1_555 ? 10 AC3 7 VAL A 6 ? VAL A 3 . ? 1_555 ? 11 AC3 7 ASP A 8 ? ASP A 5 . ? 1_555 ? 12 AC3 7 VAL A 9 ? VAL A 6 . ? 1_555 ? 13 AC3 7 ARG A 54 ? ARG A 51 . ? 5_646 ? 14 AC3 7 HOH H . ? HOH A 124 . ? 1_555 ? 15 AC3 7 HOH H . ? HOH A 135 . ? 1_555 ? 16 AC3 7 HOH H . ? HOH A 174 . ? 1_555 ? 17 AC4 4 ASN A 2 ? ASN A -1 . ? 1_555 ? 18 AC4 4 ALA A 3 ? ALA A 0 . ? 1_555 ? 19 AC4 4 MSE A 4 ? MSE A 1 . ? 1_555 ? 20 AC4 4 ASP B 29 ? ASP B 26 . ? 1_555 ? 21 AC5 6 ARG B 12 ? ARG B 9 . ? 4_464 ? 22 AC5 6 GLY B 42 ? GLY B 39 . ? 1_555 ? 23 AC5 6 ASN B 43 ? ASN B 40 . ? 1_555 ? 24 AC5 6 SER B 44 ? SER B 41 . ? 1_555 ? 25 AC5 6 HOH I . ? HOH B 129 . ? 1_555 ? 26 AC5 6 HOH I . ? HOH B 140 . ? 1_555 ? # _database_PDB_matrix.entry_id 2I9X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2I9X _atom_sites.fract_transf_matrix[1][1] 0.015492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010234 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 VAL 6 3 3 VAL VAL A . n A 1 7 THR 7 4 4 THR THR A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 ARG 12 9 9 ARG ARG A . n A 1 13 LYS 13 10 10 LYS LYS A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 GLN 15 12 12 GLN GLN A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 MSE 20 17 17 MSE MSE A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 VAL 24 21 21 VAL VAL A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 ALA 31 28 28 ALA ALA A . n A 1 32 PHE 32 29 29 PHE PHE A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 HIS 35 32 32 HIS HIS A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 ARG 38 35 35 ARG ARG A . n A 1 39 VAL 39 36 36 VAL VAL A . n A 1 40 ILE 40 37 37 ILE ILE A . n A 1 41 GLU 41 38 38 GLU GLU A . n A 1 42 GLY 42 39 39 GLY GLY A . n A 1 43 ASN 43 40 40 ASN ASN A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 PHE 47 44 44 PHE PHE A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 MSE 50 47 47 MSE MSE A . n A 1 51 PRO 51 48 48 PRO PRO A . n A 1 52 SER 52 49 49 SER SER A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 THR 55 52 52 THR THR A . n A 1 56 PRO 56 53 53 PRO PRO A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 GLY 58 55 55 GLY GLY A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 PHE 60 57 57 PHE PHE A . n A 1 61 ARG 61 58 58 ARG ARG A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 ILE 63 60 60 ILE ILE A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 HIS 65 62 62 HIS HIS A . n A 1 66 PRO 66 63 63 PRO PRO A . n A 1 67 ILE 67 64 64 ILE ILE A . n A 1 68 ASN 68 65 65 ASN ASN A . n A 1 69 SER 69 66 66 SER SER A . n A 1 70 ASP 70 67 67 ASP ASP A . n A 1 71 MSE 71 68 68 MSE MSE A . n A 1 72 ARG 72 69 69 ARG ARG A . n A 1 73 GLN 73 70 70 GLN GLN A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 MSE 80 77 77 MSE MSE A . n A 1 81 LYS 81 78 78 LYS LYS A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 ASP 84 81 81 ASP ASP A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 ASP 87 84 84 ASP ASP A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 0 ALA ALA B . n B 1 4 MSE 4 1 1 MSE MSE B . n B 1 5 LYS 5 2 2 LYS LYS B . n B 1 6 VAL 6 3 3 VAL VAL B . n B 1 7 THR 7 4 4 THR THR B . n B 1 8 ASP 8 5 5 ASP ASP B . n B 1 9 VAL 9 6 6 VAL VAL B . n B 1 10 ARG 10 7 7 ARG ARG B . n B 1 11 LEU 11 8 8 LEU LEU B . n B 1 12 ARG 12 9 9 ARG ARG B . n B 1 13 LYS 13 10 10 LYS LYS B . n B 1 14 ILE 14 11 11 ILE ILE B . n B 1 15 GLN 15 12 12 GLN GLN B . n B 1 16 THR 16 13 13 THR THR B . n B 1 17 ASP 17 14 14 ASP ASP B . n B 1 18 GLY 18 15 15 GLY GLY B . n B 1 19 ARG 19 16 16 ARG ARG B . n B 1 20 MSE 20 17 17 MSE MSE B . n B 1 21 LYS 21 18 18 LYS LYS B . n B 1 22 ALA 22 19 19 ALA ALA B . n B 1 23 LEU 23 20 20 LEU LEU B . n B 1 24 VAL 24 21 21 VAL VAL B . n B 1 25 SER 25 22 22 SER SER B . n B 1 26 ILE 26 23 23 ILE ILE B . n B 1 27 THR 27 24 24 THR THR B . n B 1 28 LEU 28 25 25 LEU LEU B . n B 1 29 ASP 29 26 26 ASP ASP B . n B 1 30 GLU 30 27 27 GLU GLU B . n B 1 31 ALA 31 28 28 ALA ALA B . n B 1 32 PHE 32 29 29 PHE PHE B . n B 1 33 VAL 33 30 30 VAL VAL B . n B 1 34 ILE 34 31 31 ILE ILE B . n B 1 35 HIS 35 32 32 HIS HIS B . n B 1 36 ASP 36 33 33 ASP ASP B . n B 1 37 LEU 37 34 34 LEU LEU B . n B 1 38 ARG 38 35 35 ARG ARG B . n B 1 39 VAL 39 36 36 VAL VAL B . n B 1 40 ILE 40 37 37 ILE ILE B . n B 1 41 GLU 41 38 38 GLU GLU B . n B 1 42 GLY 42 39 39 GLY GLY B . n B 1 43 ASN 43 40 40 ASN ASN B . n B 1 44 SER 44 41 41 SER SER B . n B 1 45 GLY 45 42 42 GLY GLY B . n B 1 46 LEU 46 43 43 LEU LEU B . n B 1 47 PHE 47 44 44 PHE PHE B . n B 1 48 VAL 48 45 45 VAL VAL B . n B 1 49 ALA 49 46 46 ALA ALA B . n B 1 50 MSE 50 47 47 MSE MSE B . n B 1 51 PRO 51 48 48 PRO PRO B . n B 1 52 SER 52 49 49 SER SER B . n B 1 53 LYS 53 50 50 LYS LYS B . n B 1 54 ARG 54 51 51 ARG ARG B . n B 1 55 THR 55 52 52 THR THR B . n B 1 56 PRO 56 53 53 PRO PRO B . n B 1 57 ASP 57 54 54 ASP ASP B . n B 1 58 GLY 58 55 55 GLY GLY B . n B 1 59 GLU 59 56 56 GLU GLU B . n B 1 60 PHE 60 57 57 PHE PHE B . n B 1 61 ARG 61 58 58 ARG ARG B . n B 1 62 ASP 62 59 59 ASP ASP B . n B 1 63 ILE 63 60 60 ILE ILE B . n B 1 64 ALA 64 61 61 ALA ALA B . n B 1 65 HIS 65 62 62 HIS HIS B . n B 1 66 PRO 66 63 63 PRO PRO B . n B 1 67 ILE 67 64 64 ILE ILE B . n B 1 68 ASN 68 65 65 ASN ASN B . n B 1 69 SER 69 66 66 SER SER B . n B 1 70 ASP 70 67 67 ASP ASP B . n B 1 71 MSE 71 68 68 MSE MSE B . n B 1 72 ARG 72 69 69 ARG ARG B . n B 1 73 GLN 73 70 70 GLN GLN B . n B 1 74 GLU 74 71 71 GLU GLU B . n B 1 75 ILE 75 72 72 ILE ILE B . n B 1 76 GLN 76 73 73 GLN GLN B . n B 1 77 ASP 77 74 74 ASP ASP B . n B 1 78 ALA 78 75 75 ALA ALA B . n B 1 79 VAL 79 76 76 VAL VAL B . n B 1 80 MSE 80 77 77 MSE MSE B . n B 1 81 LYS 81 78 78 LYS LYS B . n B 1 82 VAL 82 79 79 VAL VAL B . n B 1 83 TYR 83 80 80 TYR TYR B . n B 1 84 ASP 84 81 81 ASP ASP B . n B 1 85 GLU 85 82 82 GLU GLU B . n B 1 86 THR 86 83 83 THR THR B . n B 1 87 ASP 87 84 84 ASP ASP B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 17 ? MET SELENOMETHIONINE 3 A MSE 50 A MSE 47 ? MET SELENOMETHIONINE 4 A MSE 71 A MSE 68 ? MET SELENOMETHIONINE 5 A MSE 80 A MSE 77 ? MET SELENOMETHIONINE 6 B MSE 4 B MSE 1 ? MET SELENOMETHIONINE 7 B MSE 20 B MSE 17 ? MET SELENOMETHIONINE 8 B MSE 50 B MSE 47 ? MET SELENOMETHIONINE 9 B MSE 71 B MSE 68 ? MET SELENOMETHIONINE 10 B MSE 80 B MSE 77 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2550 ? 1 MORE -6 ? 1 'SSA (A^2)' 10520 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXE 'model building' . ? 6 SOLVE phasing . ? 7 RESOLVE phasing . ? 8 ARP/wARP 'model building' . ? 9 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 28 ? ? -142.02 -24.87 2 1 PRO B 53 ? ? -39.97 -15.79 3 1 ASP B 54 ? ? -59.94 -135.68 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 B SER -2 ? B SER 1 3 1 Y 1 B ASN -1 ? B ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 101 1 EDO EDO A . D 2 EDO 1 103 3 EDO EDO A . E 2 EDO 1 102 2 EDO EDO B . F 2 EDO 1 104 4 EDO EDO B . G 2 EDO 1 105 5 EDO EDO B . H 3 HOH 1 104 3 HOH HOH A . H 3 HOH 2 105 7 HOH HOH A . H 3 HOH 3 106 8 HOH HOH A . H 3 HOH 4 107 9 HOH HOH A . H 3 HOH 5 108 11 HOH HOH A . H 3 HOH 6 109 13 HOH HOH A . H 3 HOH 7 110 14 HOH HOH A . H 3 HOH 8 111 15 HOH HOH A . H 3 HOH 9 112 16 HOH HOH A . H 3 HOH 10 113 18 HOH HOH A . H 3 HOH 11 114 19 HOH HOH A . H 3 HOH 12 115 21 HOH HOH A . H 3 HOH 13 116 22 HOH HOH A . H 3 HOH 14 117 24 HOH HOH A . H 3 HOH 15 118 26 HOH HOH A . H 3 HOH 16 119 27 HOH HOH A . H 3 HOH 17 120 28 HOH HOH A . H 3 HOH 18 121 29 HOH HOH A . H 3 HOH 19 122 30 HOH HOH A . H 3 HOH 20 123 32 HOH HOH A . H 3 HOH 21 124 34 HOH HOH A . H 3 HOH 22 125 35 HOH HOH A . H 3 HOH 23 126 37 HOH HOH A . H 3 HOH 24 127 40 HOH HOH A . H 3 HOH 25 128 45 HOH HOH A . H 3 HOH 26 129 47 HOH HOH A . H 3 HOH 27 130 51 HOH HOH A . H 3 HOH 28 131 52 HOH HOH A . H 3 HOH 29 132 55 HOH HOH A . H 3 HOH 30 133 60 HOH HOH A . H 3 HOH 31 134 61 HOH HOH A . H 3 HOH 32 135 65 HOH HOH A . H 3 HOH 33 136 66 HOH HOH A . H 3 HOH 34 137 68 HOH HOH A . H 3 HOH 35 138 69 HOH HOH A . H 3 HOH 36 139 71 HOH HOH A . H 3 HOH 37 140 72 HOH HOH A . H 3 HOH 38 141 74 HOH HOH A . H 3 HOH 39 142 75 HOH HOH A . H 3 HOH 40 143 77 HOH HOH A . H 3 HOH 41 144 79 HOH HOH A . H 3 HOH 42 145 80 HOH HOH A . H 3 HOH 43 146 81 HOH HOH A . H 3 HOH 44 147 82 HOH HOH A . H 3 HOH 45 148 85 HOH HOH A . H 3 HOH 46 149 86 HOH HOH A . H 3 HOH 47 150 87 HOH HOH A . H 3 HOH 48 151 88 HOH HOH A . H 3 HOH 49 152 89 HOH HOH A . H 3 HOH 50 153 98 HOH HOH A . H 3 HOH 51 154 99 HOH HOH A . H 3 HOH 52 155 105 HOH HOH A . H 3 HOH 53 156 108 HOH HOH A . H 3 HOH 54 157 111 HOH HOH A . H 3 HOH 55 158 112 HOH HOH A . H 3 HOH 56 159 115 HOH HOH A . H 3 HOH 57 160 116 HOH HOH A . H 3 HOH 58 161 117 HOH HOH A . H 3 HOH 59 162 118 HOH HOH A . H 3 HOH 60 163 119 HOH HOH A . H 3 HOH 61 164 120 HOH HOH A . H 3 HOH 62 165 121 HOH HOH A . H 3 HOH 63 166 122 HOH HOH A . H 3 HOH 64 167 123 HOH HOH A . H 3 HOH 65 168 124 HOH HOH A . H 3 HOH 66 169 125 HOH HOH A . H 3 HOH 67 170 126 HOH HOH A . H 3 HOH 68 171 128 HOH HOH A . H 3 HOH 69 172 132 HOH HOH A . H 3 HOH 70 173 133 HOH HOH A . H 3 HOH 71 174 134 HOH HOH A . H 3 HOH 72 175 139 HOH HOH A . H 3 HOH 73 176 140 HOH HOH A . H 3 HOH 74 177 141 HOH HOH A . H 3 HOH 75 178 144 HOH HOH A . H 3 HOH 76 179 147 HOH HOH A . H 3 HOH 77 180 148 HOH HOH A . H 3 HOH 78 181 149 HOH HOH A . H 3 HOH 79 182 150 HOH HOH A . H 3 HOH 80 183 152 HOH HOH A . H 3 HOH 81 184 153 HOH HOH A . H 3 HOH 82 185 154 HOH HOH A . H 3 HOH 83 186 155 HOH HOH A . I 3 HOH 1 106 1 HOH HOH B . I 3 HOH 2 107 2 HOH HOH B . I 3 HOH 3 108 4 HOH HOH B . I 3 HOH 4 109 5 HOH HOH B . I 3 HOH 5 110 6 HOH HOH B . I 3 HOH 6 111 10 HOH HOH B . I 3 HOH 7 112 12 HOH HOH B . I 3 HOH 8 113 17 HOH HOH B . I 3 HOH 9 114 20 HOH HOH B . I 3 HOH 10 115 23 HOH HOH B . I 3 HOH 11 116 25 HOH HOH B . I 3 HOH 12 117 31 HOH HOH B . I 3 HOH 13 118 33 HOH HOH B . I 3 HOH 14 119 36 HOH HOH B . I 3 HOH 15 120 38 HOH HOH B . I 3 HOH 16 121 39 HOH HOH B . I 3 HOH 17 122 41 HOH HOH B . I 3 HOH 18 123 42 HOH HOH B . I 3 HOH 19 124 43 HOH HOH B . I 3 HOH 20 125 44 HOH HOH B . I 3 HOH 21 126 46 HOH HOH B . I 3 HOH 22 127 48 HOH HOH B . I 3 HOH 23 128 49 HOH HOH B . I 3 HOH 24 129 50 HOH HOH B . I 3 HOH 25 130 53 HOH HOH B . I 3 HOH 26 131 54 HOH HOH B . I 3 HOH 27 132 56 HOH HOH B . I 3 HOH 28 133 57 HOH HOH B . I 3 HOH 29 134 58 HOH HOH B . I 3 HOH 30 135 59 HOH HOH B . I 3 HOH 31 136 62 HOH HOH B . I 3 HOH 32 137 63 HOH HOH B . I 3 HOH 33 138 64 HOH HOH B . I 3 HOH 34 139 67 HOH HOH B . I 3 HOH 35 140 70 HOH HOH B . I 3 HOH 36 141 73 HOH HOH B . I 3 HOH 37 142 76 HOH HOH B . I 3 HOH 38 143 78 HOH HOH B . I 3 HOH 39 144 83 HOH HOH B . I 3 HOH 40 145 84 HOH HOH B . I 3 HOH 41 146 90 HOH HOH B . I 3 HOH 42 147 91 HOH HOH B . I 3 HOH 43 148 92 HOH HOH B . I 3 HOH 44 149 93 HOH HOH B . I 3 HOH 45 150 94 HOH HOH B . I 3 HOH 46 151 95 HOH HOH B . I 3 HOH 47 152 96 HOH HOH B . I 3 HOH 48 153 97 HOH HOH B . I 3 HOH 49 154 100 HOH HOH B . I 3 HOH 50 155 101 HOH HOH B . I 3 HOH 51 156 102 HOH HOH B . I 3 HOH 52 157 103 HOH HOH B . I 3 HOH 53 158 104 HOH HOH B . I 3 HOH 54 159 106 HOH HOH B . I 3 HOH 55 160 107 HOH HOH B . I 3 HOH 56 161 109 HOH HOH B . I 3 HOH 57 162 110 HOH HOH B . I 3 HOH 58 163 113 HOH HOH B . I 3 HOH 59 164 114 HOH HOH B . I 3 HOH 60 165 127 HOH HOH B . I 3 HOH 61 166 129 HOH HOH B . I 3 HOH 62 167 130 HOH HOH B . I 3 HOH 63 168 131 HOH HOH B . I 3 HOH 64 169 135 HOH HOH B . I 3 HOH 65 170 136 HOH HOH B . I 3 HOH 66 171 137 HOH HOH B . I 3 HOH 67 172 138 HOH HOH B . I 3 HOH 68 173 142 HOH HOH B . I 3 HOH 69 174 143 HOH HOH B . I 3 HOH 70 175 145 HOH HOH B . I 3 HOH 71 176 146 HOH HOH B . I 3 HOH 72 177 151 HOH HOH B . #