HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-SEP-06 2IAZ TITLE CRYSTAL STRUCTURE OF A CONSERVED PROTEIN OF UNKNOWN FUNCTION SP1372 TITLE 2 FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SP1372; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP1372; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS STRUCTURAL GENOMICS, STREPTOCOCCUS PNEUMONIAE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2IAZ 1 VERSN REVDAT 2 24-FEB-09 2IAZ 1 VERSN REVDAT 1 10-OCT-06 2IAZ 0 JRNL AUTH R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN JRNL TITL 2 SP1372 FROM STREPTOCOCCUS PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1472 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : 2.83000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.433 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3489 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2389 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4683 ; 1.646 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5877 ; 1.027 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;39.622 ;26.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;19.616 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.326 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3888 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 937 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2284 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1714 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1791 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.363 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.303 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.065 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2712 ; 1.183 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 892 ; 0.188 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3474 ; 1.360 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1490 ; 2.200 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 3.212 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2014 27.3131 5.6519 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.0359 REMARK 3 T33: -0.0888 T12: -0.0819 REMARK 3 T13: 0.0263 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.6816 L22: 3.3638 REMARK 3 L33: 0.6522 L12: -0.1979 REMARK 3 L13: 0.1029 L23: -0.7458 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: -0.1411 S13: 0.0262 REMARK 3 S21: -0.1029 S22: 0.0412 S23: 0.2282 REMARK 3 S31: 0.1404 S32: -0.1654 S33: -0.1333 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 50 REMARK 3 RESIDUE RANGE : B 51 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3410 28.9273 39.3024 REMARK 3 T TENSOR REMARK 3 T11: -0.0396 T22: -0.0087 REMARK 3 T33: -0.0568 T12: 0.0020 REMARK 3 T13: -0.0446 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.0009 L22: 2.1884 REMARK 3 L33: 0.0340 L12: -0.7468 REMARK 3 L13: -0.1809 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0301 S13: 0.0205 REMARK 3 S21: -0.1053 S22: 0.0435 S23: 0.0070 REMARK 3 S31: 0.0080 S32: 0.0536 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 51 REMARK 3 RESIDUE RANGE : C 52 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5707 46.2894 19.4139 REMARK 3 T TENSOR REMARK 3 T11: -0.1341 T22: -0.0454 REMARK 3 T33: -0.0441 T12: 0.0518 REMARK 3 T13: 0.0160 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.7036 L22: 0.4094 REMARK 3 L33: 4.3995 L12: 0.1591 REMARK 3 L13: -0.8797 L23: -0.3318 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: -0.0172 S13: -0.0636 REMARK 3 S21: 0.0354 S22: -0.0240 S23: -0.2084 REMARK 3 S31: 0.1428 S32: 0.0773 S33: 0.2133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 50 REMARK 3 RESIDUE RANGE : D 51 D 112 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0952 10.5470 25.6588 REMARK 3 T TENSOR REMARK 3 T11: -0.1122 T22: 0.0159 REMARK 3 T33: -0.0697 T12: -0.1200 REMARK 3 T13: -0.0351 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.5845 L22: 0.9493 REMARK 3 L33: 3.2890 L12: -0.5816 REMARK 3 L13: 0.3911 L23: -0.1789 REMARK 3 S TENSOR REMARK 3 S11: -0.2590 S12: 0.0898 S13: 0.1844 REMARK 3 S21: -0.0808 S22: 0.0208 S23: 0.0047 REMARK 3 S31: -0.1151 S32: 0.5281 S33: 0.2382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 33.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.40400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.94050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.35750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.94050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.40400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.35750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IT SEEMS THIS PROTEIN EXISTS AS TETRAMER. THE DEPOSITED REMARK 300 COORDS. OF MOLECULES A,B,C,D REPRESENT THE TETRAMER IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 56 REMARK 465 THR A 57 REMARK 465 GLY A 58 REMARK 465 GLN A 59 REMARK 465 LYS A 112 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 GLU C 109 REMARK 465 LEU C 110 REMARK 465 LEU C 111 REMARK 465 LYS C 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 5 OD2 ASP D 98 2.12 REMARK 500 NE2 GLN B 48 O GLN C 59 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 16 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -22.67 -34.72 REMARK 500 LEU A 54 3.83 -64.40 REMARK 500 ALA B 55 45.81 -90.60 REMARK 500 THR B 57 67.61 -103.94 REMARK 500 PRO C 106 -7.40 -58.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 55 GLN B 56 124.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80495 RELATED DB: TARGETDB DBREF 2IAZ A 1 112 UNP Q97Q59 Y1372_STRPN 1 112 DBREF 2IAZ B 1 112 UNP Q97Q59 Y1372_STRPN 1 112 DBREF 2IAZ C 1 112 UNP Q97Q59 Y1372_STRPN 1 112 DBREF 2IAZ D 1 112 UNP Q97Q59 Y1372_STRPN 1 112 SEQADV 2IAZ GLY A 0 UNP Q97Q59 CLONING ARTIFACT SEQADV 2IAZ MSE A 1 UNP Q97Q59 MET 1 MODIFIED RESIDUE SEQADV 2IAZ MSE A 60 UNP Q97Q59 MET 60 MODIFIED RESIDUE SEQADV 2IAZ MSE A 69 UNP Q97Q59 MET 69 MODIFIED RESIDUE SEQADV 2IAZ GLY B 0 UNP Q97Q59 CLONING ARTIFACT SEQADV 2IAZ MSE B 1 UNP Q97Q59 MET 1 MODIFIED RESIDUE SEQADV 2IAZ MSE B 60 UNP Q97Q59 MET 60 MODIFIED RESIDUE SEQADV 2IAZ MSE B 69 UNP Q97Q59 MET 69 MODIFIED RESIDUE SEQADV 2IAZ GLY C 0 UNP Q97Q59 CLONING ARTIFACT SEQADV 2IAZ MSE C 1 UNP Q97Q59 MET 1 MODIFIED RESIDUE SEQADV 2IAZ MSE C 60 UNP Q97Q59 MET 60 MODIFIED RESIDUE SEQADV 2IAZ MSE C 69 UNP Q97Q59 MET 69 MODIFIED RESIDUE SEQADV 2IAZ GLY D 0 UNP Q97Q59 CLONING ARTIFACT SEQADV 2IAZ MSE D 1 UNP Q97Q59 MET 1 MODIFIED RESIDUE SEQADV 2IAZ MSE D 60 UNP Q97Q59 MET 60 MODIFIED RESIDUE SEQADV 2IAZ MSE D 69 UNP Q97Q59 MET 69 MODIFIED RESIDUE SEQRES 1 A 113 GLY MSE SER ASN ILE TYR ASP SER ALA ASN GLU LEU SER SEQRES 2 A 113 ARG GLY LEU ARG GLY LEU PRO GLU TYR LYS ALA VAL LYS SEQRES 3 A 113 ALA ALA LYS ASP ALA ILE ALA ALA ASP ALA GLU ALA SER SEQRES 4 A 113 LYS ILE PHE THR ASP TYR LEU ALA PHE GLN GLU GLU ILE SEQRES 5 A 113 GLN LYS LEU ALA GLN THR GLY GLN MSE PRO ASP ALA SER SEQRES 6 A 113 PHE GLN ALA LYS MSE GLU GLY PHE GLY LYS GLN ILE GLN SEQRES 7 A 113 GLY ASN SER LEU LEU SER GLU PHE PHE THR LYS GLN GLN SEQRES 8 A 113 GLN LEU ALA ILE TYR LEU SER ASP ILE GLU LYS ILE VAL SEQRES 9 A 113 PHE GLU PRO VAL SER GLU LEU LEU LYS SEQRES 1 B 113 GLY MSE SER ASN ILE TYR ASP SER ALA ASN GLU LEU SER SEQRES 2 B 113 ARG GLY LEU ARG GLY LEU PRO GLU TYR LYS ALA VAL LYS SEQRES 3 B 113 ALA ALA LYS ASP ALA ILE ALA ALA ASP ALA GLU ALA SER SEQRES 4 B 113 LYS ILE PHE THR ASP TYR LEU ALA PHE GLN GLU GLU ILE SEQRES 5 B 113 GLN LYS LEU ALA GLN THR GLY GLN MSE PRO ASP ALA SER SEQRES 6 B 113 PHE GLN ALA LYS MSE GLU GLY PHE GLY LYS GLN ILE GLN SEQRES 7 B 113 GLY ASN SER LEU LEU SER GLU PHE PHE THR LYS GLN GLN SEQRES 8 B 113 GLN LEU ALA ILE TYR LEU SER ASP ILE GLU LYS ILE VAL SEQRES 9 B 113 PHE GLU PRO VAL SER GLU LEU LEU LYS SEQRES 1 C 113 GLY MSE SER ASN ILE TYR ASP SER ALA ASN GLU LEU SER SEQRES 2 C 113 ARG GLY LEU ARG GLY LEU PRO GLU TYR LYS ALA VAL LYS SEQRES 3 C 113 ALA ALA LYS ASP ALA ILE ALA ALA ASP ALA GLU ALA SER SEQRES 4 C 113 LYS ILE PHE THR ASP TYR LEU ALA PHE GLN GLU GLU ILE SEQRES 5 C 113 GLN LYS LEU ALA GLN THR GLY GLN MSE PRO ASP ALA SER SEQRES 6 C 113 PHE GLN ALA LYS MSE GLU GLY PHE GLY LYS GLN ILE GLN SEQRES 7 C 113 GLY ASN SER LEU LEU SER GLU PHE PHE THR LYS GLN GLN SEQRES 8 C 113 GLN LEU ALA ILE TYR LEU SER ASP ILE GLU LYS ILE VAL SEQRES 9 C 113 PHE GLU PRO VAL SER GLU LEU LEU LYS SEQRES 1 D 113 GLY MSE SER ASN ILE TYR ASP SER ALA ASN GLU LEU SER SEQRES 2 D 113 ARG GLY LEU ARG GLY LEU PRO GLU TYR LYS ALA VAL LYS SEQRES 3 D 113 ALA ALA LYS ASP ALA ILE ALA ALA ASP ALA GLU ALA SER SEQRES 4 D 113 LYS ILE PHE THR ASP TYR LEU ALA PHE GLN GLU GLU ILE SEQRES 5 D 113 GLN LYS LEU ALA GLN THR GLY GLN MSE PRO ASP ALA SER SEQRES 6 D 113 PHE GLN ALA LYS MSE GLU GLY PHE GLY LYS GLN ILE GLN SEQRES 7 D 113 GLY ASN SER LEU LEU SER GLU PHE PHE THR LYS GLN GLN SEQRES 8 D 113 GLN LEU ALA ILE TYR LEU SER ASP ILE GLU LYS ILE VAL SEQRES 9 D 113 PHE GLU PRO VAL SER GLU LEU LEU LYS MODRES 2IAZ MSE A 1 MET SELENOMETHIONINE MODRES 2IAZ MSE A 60 MET SELENOMETHIONINE MODRES 2IAZ MSE A 69 MET SELENOMETHIONINE MODRES 2IAZ MSE B 1 MET SELENOMETHIONINE MODRES 2IAZ MSE B 60 MET SELENOMETHIONINE MODRES 2IAZ MSE B 69 MET SELENOMETHIONINE MODRES 2IAZ MSE C 60 MET SELENOMETHIONINE MODRES 2IAZ MSE C 69 MET SELENOMETHIONINE MODRES 2IAZ MSE D 1 MET SELENOMETHIONINE MODRES 2IAZ MSE D 60 MET SELENOMETHIONINE MODRES 2IAZ MSE D 69 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 60 8 HET MSE A 69 8 HET MSE B 1 8 HET MSE B 60 8 HET MSE B 69 8 HET MSE C 60 8 HET MSE C 69 8 HET MSE D 1 8 HET MSE D 60 8 HET MSE D 69 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 5 HOH *105(H2 O) HELIX 1 1 GLY A 0 GLY A 17 1 18 HELIX 2 2 LEU A 18 ASP A 34 1 17 HELIX 3 3 ASP A 34 GLN A 48 1 15 HELIX 4 4 GLU A 49 ILE A 51 5 3 HELIX 5 5 ASP A 62 GLY A 78 1 17 HELIX 6 6 ASN A 79 GLU A 109 1 31 HELIX 7 7 GLY B 0 GLY B 17 1 18 HELIX 8 8 LEU B 18 ALA B 33 1 16 HELIX 9 9 ASP B 34 ALA B 55 1 22 HELIX 10 10 ASP B 62 GLY B 78 1 17 HELIX 11 11 ASN B 79 PHE B 104 1 26 HELIX 12 12 PHE B 104 LYS B 112 1 9 HELIX 13 13 ASN C 3 LEU C 18 1 16 HELIX 14 14 LEU C 18 ALA C 33 1 16 HELIX 15 15 ASP C 34 GLN C 56 1 23 HELIX 16 16 ASP C 62 ASN C 79 1 18 HELIX 17 17 ASN C 79 PHE C 104 1 26 HELIX 18 18 GLU C 105 SER C 108 5 4 HELIX 19 19 GLY D 0 LEU D 18 1 19 HELIX 20 20 LEU D 18 ASP D 34 1 17 HELIX 21 21 ASP D 34 LEU D 54 1 21 HELIX 22 22 ALA D 55 THR D 57 5 3 HELIX 23 23 ASP D 62 GLY D 78 1 17 HELIX 24 24 ASN D 79 PHE D 104 1 26 HELIX 25 25 PHE D 104 LEU D 110 1 7 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C MSE A 60 N PRO A 61 1555 1555 1.34 LINK C LYS A 68 N MSE A 69 1555 1555 1.32 LINK C MSE A 69 N GLU A 70 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C GLN B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N PRO B 61 1555 1555 1.36 LINK C LYS B 68 N MSE B 69 1555 1555 1.32 LINK C MSE B 69 N GLU B 70 1555 1555 1.32 LINK C GLN C 59 N MSE C 60 1555 1555 1.32 LINK C MSE C 60 N PRO C 61 1555 1555 1.33 LINK C LYS C 68 N MSE C 69 1555 1555 1.33 LINK C MSE C 69 N GLU C 70 1555 1555 1.32 LINK C GLY D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N SER D 2 1555 1555 1.33 LINK C GLN D 59 N MSE D 60 1555 1555 1.33 LINK C MSE D 60 N PRO D 61 1555 1555 1.35 LINK C LYS D 68 N MSE D 69 1555 1555 1.34 LINK C MSE D 69 N GLU D 70 1555 1555 1.33 CRYST1 64.808 86.715 93.881 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010652 0.00000